Wall clock time and date at job start Wed Apr 1 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.46828 * 2 1 4 4 O 1.42893 * 109.47200 * 120.00261 * 2 1 3 5 5 C 1.35501 * 117.00634 * 90.00155 * 4 2 1 6 6 C 1.39159 * 119.52988 * 180.02562 * 5 4 2 7 7 C 1.37961 * 119.26593 * 179.97438 * 6 5 4 8 8 C 1.40287 * 118.35285 * 359.97438 * 7 6 5 9 9 C 1.47613 * 120.49465 * 180.02562 * 8 7 6 10 10 O 1.21579 * 120.00123 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99901 * 179.97438 * 9 8 7 12 12 C 1.46504 * 119.99983 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.24357 * 324.65723 * 12 11 9 14 14 C 1.54842 * 109.35713 * 205.00095 * 12 11 9 15 15 C 1.50120 * 110.81478 * 200.92560 * 14 12 11 16 16 C 1.52533 * 105.41491 * 97.68551 * 15 14 12 17 17 C 1.46237 * 114.27420 * 270.59638 * 16 15 14 18 18 N 1.50172 * 107.53509 * 58.40495 * 17 16 15 19 19 C 1.36931 * 120.53516 * 109.56592 * 18 17 16 20 20 H 1.08004 * 119.99977 * 172.84823 * 19 18 17 21 21 C 1.38819 * 120.00300 * 352.84705 * 19 18 17 22 22 N 1.31616 * 119.99532 * 319.30052 * 21 19 18 23 23 Si 1.86802 * 120.00013 * 139.29464 * 21 19 18 24 24 H 1.48494 * 109.46784 * 180.02562 * 23 21 19 25 25 H 1.48497 * 109.47014 * 60.00199 * 23 21 19 26 26 H 1.48496 * 109.47313 * 300.00228 * 23 21 19 27 27 C 1.43434 * 118.92416 * 289.84036 * 18 17 16 28 28 C 1.39522 * 119.00287 * 0.27036 * 8 7 6 29 29 N 1.31662 * 120.62953 * 359.43154 * 28 8 7 30 30 H 1.08996 * 109.46669 * 299.99786 * 1 2 3 31 31 H 1.08994 * 109.47324 * 60.00524 * 1 2 3 32 32 H 1.09003 * 109.46856 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46867 * 240.00043 * 2 1 3 34 34 H 1.09006 * 109.47009 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47019 * 299.99662 * 3 2 1 36 36 H 1.08996 * 109.47321 * 60.00613 * 3 2 1 37 37 H 1.08006 * 120.36836 * 359.97438 * 6 5 4 38 38 H 1.07997 * 120.82062 * 180.02562 * 7 6 5 39 39 H 0.97001 * 120.00018 * 359.97438 * 11 9 8 40 40 H 1.09009 * 109.20945 * 80.58420 * 14 12 11 41 41 H 1.08999 * 109.20807 * 321.27404 * 14 12 11 42 42 H 1.09001 * 110.24946 * 338.71590 * 15 14 12 43 43 H 1.08997 * 110.25477 * 216.65594 * 15 14 12 44 44 H 1.08992 * 108.52468 * 149.35447 * 16 15 14 45 45 H 1.08992 * 108.39616 * 31.74264 * 16 15 14 46 46 H 1.09003 * 109.84600 * 298.89501 * 17 16 15 47 47 H 1.09005 * 109.89964 * 177.94494 * 17 16 15 48 48 H 0.97000 * 120.00306 * 353.65432 * 22 21 19 49 49 H 1.09007 * 108.15424 * 213.03102 * 27 18 17 50 50 H 1.08997 * 108.16212 * 329.59765 * 27 18 17 51 51 H 1.08000 * 119.68347 * 179.72449 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2115 -2.0092 1.0654 6 6 2.6745 -2.7178 2.1700 7 6 2.8809 -4.0775 2.0609 8 6 2.6129 -4.6955 0.8304 9 6 2.8167 -6.1476 0.6613 10 8 3.2201 -6.8174 1.5923 11 7 2.5555 -6.7311 -0.5252 12 6 2.7582 -8.1723 -0.6932 13 1 3.6241 -8.4838 -0.1089 14 6 3.0092 -8.4844 -2.1890 15 6 2.7208 -9.9268 -2.4887 16 6 1.3071 -9.9472 -3.0610 17 6 0.2543 -10.0976 -2.0574 18 7 0.3838 -8.9554 -1.0911 19 6 -0.5508 -7.9549 -1.0674 20 1 -0.5146 -7.2003 -0.2955 21 6 -1.5448 -7.9104 -2.0354 22 7 -1.2544 -8.1833 -3.2898 23 14 -3.2945 -7.4634 -1.5577 24 1 -4.1586 -7.4872 -2.7650 25 1 -3.3128 -6.1033 -0.9619 26 1 -3.8030 -8.4449 -0.5661 27 6 1.5054 -8.9263 -0.1976 28 6 2.1557 -3.9160 -0.2327 29 7 1.9670 -2.6216 -0.0829 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 2.8700 -2.2089 3.1024 38 1 3.2392 -4.6520 2.9023 39 1 2.2332 -6.1969 -1.2680 40 1 4.0502 -8.2691 -2.4305 41 1 2.3625 -7.8548 -2.8001 42 1 2.7662 -10.5185 -1.5743 43 1 3.4304 -10.3089 -3.2225 44 1 1.2318 -10.7730 -3.7683 45 1 1.1408 -9.0147 -3.6002 46 1 0.3777 -11.0439 -1.5305 47 1 -0.7236 -10.0668 -2.5380 48 1 -0.3320 -8.3250 -3.5543 49 1 1.1840 -8.4644 0.7360 50 1 1.7932 -9.9549 0.0200 51 1 1.9502 -4.3796 -1.1862 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034232913.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:44 Heat of formation + Delta-G solvation = -9.419660 kcal Electronic energy + Delta-G solvation = -31631.642633 eV Core-core repulsion = 27532.387386 eV Total energy + Delta-G solvation = -4099.255247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.92352 -39.58615 -38.38840 -37.60455 -34.54467 -33.55771 -33.30467 -32.56607 -31.42306 -30.68865 -29.47894 -27.49419 -26.12875 -24.71138 -24.09818 -23.82246 -22.74574 -21.33613 -20.73264 -20.03958 -19.35328 -18.68640 -17.50789 -17.17680 -16.91155 -15.90184 -15.56239 -15.20687 -15.01337 -14.73036 -14.62103 -14.43734 -14.23456 -13.79028 -13.63975 -13.59435 -13.25711 -13.08693 -12.74758 -12.71136 -12.56497 -12.53451 -12.36241 -12.16359 -12.10595 -11.84425 -11.15463 -11.08125 -10.95786 -10.88505 -10.59891 -10.42430 -10.19708 -10.04811 -10.03727 -9.96378 -9.82448 -9.75133 -9.49432 -9.39727 -8.81218 -8.56245 -8.15733 -6.97710 -6.18800 -3.03589 0.73526 1.12001 2.80374 3.06143 3.49983 3.53349 3.57860 3.73231 3.89690 4.07906 4.59723 4.62671 4.73960 4.76133 4.83563 4.92769 5.00794 5.10849 5.13050 5.18338 5.29597 5.31576 5.39076 5.45708 5.50033 5.55601 5.59798 5.67286 5.74822 5.87444 5.92044 5.96597 5.98354 6.01419 6.08678 6.23223 6.26395 6.33000 6.36365 6.57559 6.66591 6.66882 6.84389 6.89150 7.04143 7.08006 7.21936 7.23738 7.65812 7.89813 8.00475 8.51509 8.56821 9.06146 9.84007 10.28794 11.11573 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.003344 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.784914 B = 8371.359752 C = 9972.452496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.300 6.300 5 C 0.340 3.660 6 C -0.201 4.201 7 C 0.015 3.985 8 C -0.218 4.218 9 C 0.564 3.436 10 O -0.552 6.552 11 N -0.697 5.697 12 C 0.115 3.885 13 H 0.077 0.923 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.135 4.135 17 C 0.129 3.871 18 N -0.586 5.586 19 C -0.353 4.353 20 H 0.063 0.937 21 C -0.013 4.013 22 N -0.901 5.901 23 Si 1.033 2.967 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.296 1.296 27 C 0.153 3.847 28 C 0.183 3.817 29 N -0.542 5.542 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.398 0.602 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.071 0.929 46 H 0.024 0.976 47 H 0.094 0.906 48 H 0.273 0.727 49 H 0.042 0.958 50 H 0.038 0.962 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.317 11.552 3.950 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.023 3.977 3 C -0.207 4.207 4 O -0.207 6.207 5 C 0.161 3.839 6 C -0.222 4.222 7 C -0.011 4.011 8 C -0.224 4.224 9 C 0.351 3.649 10 O -0.431 6.431 11 N -0.346 5.346 12 C 0.007 3.993 13 H 0.095 0.905 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.174 4.174 17 C 0.005 3.995 18 N -0.308 5.308 19 C -0.481 4.481 20 H 0.081 0.919 21 C -0.216 4.216 22 N -0.543 5.543 23 Si 0.863 3.137 24 H -0.213 1.213 25 H -0.223 1.223 26 H -0.223 1.223 27 C 0.022 3.978 28 C 0.025 3.975 29 N -0.265 5.265 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.233 0.767 40 H 0.064 0.936 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.042 0.958 47 H 0.112 0.888 48 H 0.086 0.914 49 H 0.060 0.940 50 H 0.056 0.944 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.722 11.918 3.544 14.637 hybrid contribution 1.541 -0.179 0.665 1.688 sum 9.263 11.739 4.209 15.535 Atomic orbital electron populations 1.22226 0.94618 1.03316 1.02575 1.22402 0.94637 0.92702 0.87940 1.21907 1.01886 0.93899 1.03007 1.86252 1.79570 1.15953 1.38946 1.20031 0.89476 0.84633 0.89747 1.21005 1.07989 0.94051 0.99159 1.21503 0.90135 0.92798 0.96661 1.20912 1.09557 0.95510 0.96436 1.17777 0.77848 0.86161 0.83144 1.90732 1.47627 1.64792 1.39987 1.45916 1.65776 1.10096 1.12828 1.22818 1.00613 0.79563 0.96272 0.90544 1.21676 0.99922 0.97762 0.95664 1.20944 0.97363 0.95964 1.00547 1.21093 0.94853 1.01896 0.99592 1.20596 0.99586 0.88674 0.90624 1.44362 1.22512 1.22682 1.41206 1.19879 1.07258 1.08808 1.12108 0.91894 1.25351 1.03354 1.00576 0.92312 1.70875 1.22780 1.45434 1.15190 0.83993 0.78277 0.75855 0.75571 1.21347 1.22282 1.22321 1.20621 0.86907 0.96663 0.93563 1.22684 0.89214 0.87428 0.98148 1.67264 1.22253 1.12481 1.24496 0.92047 0.90956 0.91658 0.89016 0.91883 0.90416 0.91666 0.83659 0.82965 0.76727 0.93592 0.90992 0.91700 0.92608 0.94191 0.91043 0.95820 0.88756 0.91382 0.94010 0.94370 0.81902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.53 37.16 0.35 -1.36 16 2 C 0.08 0.82 3.10 -26.73 -0.08 0.74 16 3 C -0.15 -1.15 9.56 37.15 0.36 -0.79 16 4 O -0.30 -3.69 9.75 -18.20 -0.18 -3.87 16 5 C 0.34 4.55 7.46 -16.96 -0.13 4.42 16 6 C -0.20 -2.45 10.02 -39.34 -0.39 -2.84 16 7 C 0.01 0.20 9.70 -38.91 -0.38 -0.18 16 8 C -0.22 -3.29 5.89 -104.82 -0.62 -3.91 16 9 C 0.56 9.85 7.59 -12.43 -0.09 9.75 16 10 O -0.55 -11.04 16.08 5.30 0.09 -10.96 16 11 N -0.70 -11.85 5.04 -53.17 -0.27 -12.12 16 12 C 0.12 2.03 2.91 -66.23 -0.19 1.84 16 13 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 14 C -0.11 -1.82 5.23 -27.19 -0.14 -1.96 16 15 C -0.11 -1.76 5.76 -28.40 -0.16 -1.93 16 16 C -0.14 -2.54 4.96 -30.18 -0.15 -2.69 16 17 C 0.13 2.81 5.22 -5.20 -0.03 2.78 16 18 N -0.59 -13.52 2.62 -175.40 -0.46 -13.98 16 19 C -0.35 -9.15 9.46 -15.06 -0.14 -9.29 16 20 H 0.06 1.71 8.05 -52.48 -0.42 1.29 16 21 C -0.01 -0.36 4.53 -17.43 -0.08 -0.44 16 22 N -0.90 -24.68 11.99 55.49 0.67 -24.02 16 23 Si 1.03 24.49 30.06 -169.99 -5.11 19.39 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.30 -6.98 7.11 56.52 0.40 -6.57 16 27 C 0.15 3.15 4.75 -4.93 -0.02 3.13 16 28 C 0.18 2.61 10.71 -17.15 -0.18 2.43 16 29 N -0.54 -7.70 8.61 -12.97 -0.11 -7.81 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 1.03 6.97 -51.93 -0.36 0.67 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 38 H 0.15 1.87 7.73 -52.49 -0.41 1.47 16 39 H 0.40 6.40 6.49 -40.82 -0.27 6.14 16 40 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.07 1.31 6.58 -51.93 -0.34 0.97 16 42 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.51 4.65 -51.93 -0.24 1.27 16 46 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 47 H 0.09 2.35 5.61 -51.93 -0.29 2.06 16 48 H 0.27 7.23 4.95 -40.82 -0.20 7.03 16 49 H 0.04 0.96 7.81 -51.93 -0.41 0.55 16 50 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 51 H 0.16 2.14 6.41 -52.49 -0.34 1.80 16 LS Contribution 397.29 15.07 5.99 5.99 Total: -1.00 -29.94 397.29 -9.27 -39.21 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.80 Total: 8.47 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -2.09 Total: -0.30 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.17 Total: -57.92 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.09 Total: -14.83 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.11 Total: 19.39 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.94 -9.27 -39.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034232913.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.788 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds