Wall clock time and date at job start Wed Apr 1 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46876 * 2 1 4 4 O 1.42891 * 109.47234 * 120.00682 * 2 1 3 5 5 C 1.35920 * 117.00333 * 82.57149 * 4 2 1 6 6 C 1.38856 * 120.40686 * 176.11556 * 5 4 2 7 7 N 1.31880 * 120.99901 * 180.02562 * 6 5 4 8 8 C 1.31679 * 121.94270 * 359.65737 * 7 6 5 9 9 C 1.39525 * 120.69151 * 0.63064 * 8 7 6 10 10 C 1.47850 * 120.53453 * 179.67849 * 9 8 7 11 11 O 1.21546 * 120.00026 * 179.73090 * 10 9 8 12 12 N 1.34776 * 119.99937 * 359.44832 * 10 9 8 13 13 C 1.46502 * 120.00010 * 180.27390 * 12 10 9 14 14 H 1.08997 * 108.46088 * 325.00585 * 13 12 10 15 15 C 1.52531 * 108.52189 * 207.29214 * 13 12 10 16 16 C 1.50306 * 105.33004 * 149.24379 * 15 13 12 17 17 C 1.54841 * 110.68879 * 97.83821 * 16 15 13 18 18 C 1.54897 * 110.14271 * 321.12975 * 17 16 15 19 19 N 1.43429 * 116.08375 * 318.64155 * 18 17 16 20 20 C 1.36938 * 120.53875 * 271.59169 * 19 18 17 21 21 H 1.08004 * 120.00304 * 335.10963 * 20 19 18 22 22 C 1.38817 * 120.00004 * 155.10155 * 20 19 18 23 23 N 1.31614 * 119.99789 * 341.86099 * 22 20 19 24 24 Si 1.86797 * 119.99909 * 161.85506 * 22 20 19 25 25 H 1.48510 * 109.47168 * 60.00413 * 24 22 20 26 26 H 1.48501 * 109.47208 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47319 * 300.00504 * 24 22 20 28 28 C 1.46232 * 108.52229 * 82.71818 * 13 12 10 29 29 C 1.38836 * 120.40512 * 356.14417 * 5 4 2 30 30 H 1.09001 * 109.47782 * 59.99153 * 1 2 3 31 31 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46834 * 299.99390 * 1 2 3 33 33 H 1.09003 * 109.46337 * 240.00595 * 2 1 3 34 34 H 1.09000 * 109.46809 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47441 * 300.00190 * 3 2 1 36 36 H 1.09003 * 109.47152 * 60.01094 * 3 2 1 37 37 H 1.08004 * 119.49931 * 0.02668 * 6 5 4 38 38 H 1.07999 * 119.65619 * 180.34282 * 8 7 6 39 39 H 0.96997 * 119.99537 * 0.28570 * 12 10 9 40 40 H 1.08997 * 110.24661 * 268.33073 * 15 13 12 41 41 H 1.09005 * 110.25092 * 30.38211 * 15 13 12 42 42 H 1.09000 * 109.27107 * 337.53020 * 16 15 13 43 43 H 1.08998 * 109.23125 * 218.12190 * 16 15 13 44 44 H 1.09009 * 109.35513 * 200.92532 * 17 16 15 45 45 H 1.08998 * 109.25047 * 81.27286 * 17 16 15 46 46 H 1.09004 * 108.15748 * 196.92104 * 18 17 16 47 47 H 1.08997 * 108.15973 * 80.36164 * 18 17 16 48 48 H 0.97007 * 119.99491 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.84397 * 299.15699 * 28 13 12 50 50 H 1.09007 * 109.84584 * 60.13915 * 28 13 12 51 51 H 1.08006 * 120.88182 * 359.95305 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 2.0644 -2.0307 1.1151 6 6 2.5913 -2.7524 2.1779 7 7 2.6538 -4.0692 2.1402 8 6 2.2179 -4.7580 1.1060 9 6 1.6796 -4.1093 -0.0059 10 6 1.1977 -4.8858 -1.1681 11 8 0.7259 -4.3110 -2.1296 12 7 1.2867 -6.2306 -1.1639 13 6 0.8148 -6.9996 -2.3181 14 1 -0.0579 -6.4966 -2.7345 15 6 0.3926 -8.3844 -1.8378 16 6 -0.7135 -8.8061 -2.7640 17 6 -0.1691 -9.7290 -3.8818 18 6 1.2202 -9.2325 -4.3538 19 7 1.3673 -7.8130 -4.4974 20 6 1.0537 -7.1971 -5.6796 21 1 1.0844 -7.7548 -6.6040 22 6 0.6963 -5.8557 -5.6899 23 7 0.3118 -5.2686 -4.5765 24 14 0.7613 -4.8841 -7.2840 25 1 -0.1485 -5.5054 -8.2799 26 1 0.3348 -3.4848 -7.0286 27 1 2.1496 -4.8896 -7.8109 28 6 1.8701 -7.0132 -3.3302 29 6 1.5982 -2.7121 -0.0011 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 2.9555 -2.2275 3.0487 38 1 2.2821 -5.8360 1.1165 39 1 1.6632 -6.6892 -0.3966 40 1 1.2301 -9.0787 -1.9056 41 1 0.0258 -8.3326 -0.8126 42 1 -1.1613 -7.9211 -3.2159 43 1 -1.4735 -9.3418 -2.1951 44 1 -0.8606 -9.7225 -4.7244 45 1 -0.0782 -10.7446 -3.4968 46 1 1.4374 -9.6957 -5.3164 47 1 1.9661 -9.5808 -3.6395 48 1 0.0624 -4.3312 -4.5837 49 1 2.0914 -5.9942 -3.6477 50 1 2.7679 -7.4779 -2.9226 51 1 1.1828 -2.1782 -0.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034344540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:25 Heat of formation + Delta-G solvation = -2.726595 kcal Electronic energy + Delta-G solvation = -31946.107002 eV Core-core repulsion = 27847.141988 eV Total energy + Delta-G solvation = -4098.965014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.91895 -39.40218 -38.45369 -37.29511 -34.11686 -33.54092 -33.13938 -32.29090 -30.85277 -30.50282 -29.26970 -27.55388 -26.12552 -24.72787 -24.14238 -23.90091 -22.65976 -21.27725 -20.50631 -19.85405 -18.91761 -18.37841 -16.96607 -16.86597 -16.65254 -16.30436 -15.69862 -15.28109 -14.88684 -14.57492 -14.42750 -14.21015 -14.00062 -13.73035 -13.54002 -13.43670 -13.09682 -12.94532 -12.73631 -12.53011 -12.43944 -12.41788 -12.20302 -12.00567 -11.84696 -11.31003 -11.24857 -11.20874 -10.99740 -10.70734 -10.66475 -10.25167 -10.15467 -9.97893 -9.83204 -9.76674 -9.65979 -9.51733 -9.39091 -9.00324 -8.55099 -8.47055 -8.15423 -6.60165 -5.59870 -3.06664 0.72216 1.15843 2.88068 3.28133 3.45459 3.52379 3.52829 3.67228 4.05271 4.33790 4.49678 4.59500 4.61785 4.64505 4.79836 4.91836 4.97546 5.04053 5.29800 5.36176 5.45802 5.46723 5.51868 5.52911 5.57098 5.61053 5.66230 5.78102 5.84912 5.91925 5.95310 6.04061 6.12577 6.21647 6.25721 6.32701 6.41777 6.54708 6.62012 6.87229 6.95768 7.00773 7.07990 7.09332 7.19773 7.25004 7.59245 7.67552 7.79198 7.92913 8.25274 8.55407 8.92856 9.31959 9.96290 10.49123 11.44565 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003465 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.047067 B = 8078.302539 C = 9978.659101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.073 3.927 3 C -0.146 4.146 4 O -0.305 6.305 5 C 0.076 3.924 6 C 0.082 3.918 7 N -0.451 5.451 8 C 0.084 3.916 9 C -0.128 4.128 10 C 0.536 3.464 11 O -0.474 6.474 12 N -0.725 5.725 13 C 0.131 3.869 14 H 0.131 0.869 15 C -0.124 4.124 16 C -0.105 4.105 17 C -0.144 4.144 18 C 0.157 3.843 19 N -0.580 5.580 20 C -0.276 4.276 21 H 0.065 0.935 22 C 0.011 3.989 23 N -0.863 5.863 24 Si 0.891 3.109 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.287 1.287 28 C 0.158 3.842 29 C -0.116 4.116 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.382 0.618 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.042 0.958 46 H 0.031 0.969 47 H 0.026 0.974 48 H 0.262 0.738 49 H 0.096 0.904 50 H 0.004 0.996 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 5.692 13.596 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.017 3.983 3 C -0.203 4.203 4 O -0.218 6.218 5 C 0.028 3.972 6 C -0.077 4.077 7 N -0.159 5.159 8 C -0.074 4.074 9 C -0.133 4.133 10 C 0.318 3.682 11 O -0.346 6.346 12 N -0.377 5.377 13 C 0.028 3.972 14 H 0.148 0.852 15 C -0.162 4.162 16 C -0.143 4.143 17 C -0.186 4.186 18 C 0.028 3.972 19 N -0.301 5.301 20 C -0.405 4.405 21 H 0.082 0.918 22 C -0.190 4.190 23 N -0.504 5.504 24 Si 0.721 3.279 25 H -0.212 1.212 26 H -0.219 1.219 27 H -0.214 1.214 28 C 0.033 3.967 29 C -0.143 4.143 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.181 0.819 38 H 0.177 0.823 39 H 0.215 0.785 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.050 0.950 47 H 0.044 0.956 48 H 0.073 0.927 49 H 0.114 0.886 50 H 0.022 0.978 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.227 6.023 13.707 15.137 hybrid contribution -0.391 0.664 -1.319 1.527 sum 1.836 6.687 12.388 14.197 Atomic orbital electron populations 1.22405 0.94709 1.03555 1.03276 1.22537 0.94693 0.93831 0.87270 1.21831 1.02120 0.93183 1.03158 1.86117 1.80897 1.14948 1.39791 1.20053 0.97647 0.83951 0.95529 1.22284 0.98848 0.89230 0.97336 1.67678 1.14901 1.07010 1.26331 1.22851 0.95651 1.00309 0.88608 1.21321 1.00792 0.94282 0.96950 1.17989 0.80895 0.83037 0.86256 1.90995 1.41635 1.69093 1.32881 1.46403 1.64274 1.05935 1.21112 1.21262 1.02720 0.89356 0.83905 0.85185 1.21404 0.99311 0.97483 0.97970 1.21313 0.96517 1.00425 0.96016 1.22907 1.01183 0.96704 0.97760 1.20419 0.92813 0.86456 0.97508 1.43985 1.74086 1.01250 1.10803 1.18986 1.42656 0.93870 0.84989 0.91773 1.25025 0.99133 0.98524 0.96356 1.69803 1.43979 1.12201 1.24458 0.86577 0.77678 0.79478 0.84140 1.21245 1.21889 1.21399 1.20421 0.91335 0.98489 0.86463 1.21931 0.99804 0.94194 0.98391 0.90600 0.91585 0.91442 0.90478 0.91585 0.90282 0.91444 0.81931 0.82300 0.78546 0.91920 0.92792 0.90687 0.94441 0.93024 0.93944 0.95032 0.95613 0.92700 0.88613 0.97839 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 9.14 37.16 0.34 -1.44 16 2 C 0.07 0.74 2.86 -26.73 -0.08 0.67 16 3 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 4 O -0.30 -3.58 9.82 -19.49 -0.19 -3.77 16 5 C 0.08 0.97 6.59 -39.13 -0.26 0.72 16 6 C 0.08 0.99 11.13 -17.30 -0.19 0.80 16 7 N -0.45 -5.95 10.34 -12.79 -0.13 -6.08 16 8 C 0.08 1.11 10.71 -17.14 -0.18 0.92 16 9 C -0.13 -1.95 5.89 -104.84 -0.62 -2.57 16 10 C 0.54 9.93 7.62 -12.33 -0.09 9.84 16 11 O -0.47 -10.86 13.60 5.32 0.07 -10.79 16 12 N -0.72 -12.31 4.86 -58.16 -0.28 -12.59 16 13 C 0.13 2.63 1.81 -71.39 -0.13 2.50 16 14 H 0.13 3.22 4.59 -51.93 -0.24 2.98 16 15 C -0.12 -2.11 5.24 -28.31 -0.15 -2.26 16 16 C -0.10 -1.93 5.66 -27.10 -0.15 -2.08 16 17 C -0.14 -2.66 6.41 -24.76 -0.16 -2.82 16 18 C 0.16 3.23 5.17 -4.67 -0.02 3.21 16 19 N -0.58 -14.01 2.60 -175.09 -0.45 -14.47 16 20 C -0.28 -7.43 9.62 -15.06 -0.14 -7.58 16 21 H 0.06 1.74 7.88 -52.48 -0.41 1.33 16 22 C 0.01 0.30 4.93 -17.43 -0.09 0.22 16 23 N -0.86 -23.91 7.56 55.49 0.42 -23.49 16 24 Si 0.89 21.89 29.59 -169.99 -5.03 16.86 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.16 3.61 4.63 -5.21 -0.02 3.59 16 29 C -0.12 -1.69 7.79 -38.72 -0.30 -1.99 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.75 6.77 -51.93 -0.35 0.40 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.85 6.42 -51.93 -0.33 0.52 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 38 H 0.16 1.69 6.42 -52.49 -0.34 1.36 16 39 H 0.38 5.08 6.64 -40.82 -0.27 4.81 16 40 H 0.06 1.03 6.27 -51.93 -0.33 0.71 16 41 H 0.05 0.80 8.03 -51.93 -0.42 0.39 16 42 H 0.07 1.66 6.82 -51.93 -0.35 1.31 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 45 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.03 0.65 7.99 -51.93 -0.42 0.24 16 47 H 0.03 0.49 6.88 -51.93 -0.36 0.13 16 48 H 0.26 7.46 8.02 -40.82 -0.33 7.13 16 49 H 0.10 2.56 5.77 -51.93 -0.30 2.26 16 50 H 0.00 0.08 8.12 -51.93 -0.42 -0.35 16 51 H 0.15 2.29 5.22 -52.48 -0.27 2.02 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -30.36 389.48 -9.36 -39.72 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.74 Total: 7.81 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.90 Total: 0.93 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.45 Total: -56.64 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.12 Total: -14.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.36 -9.36 -39.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034344540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.996 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds