Wall clock time and date at job start Wed Apr 1 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.46876 * 2 1 4 4 O 1.42891 * 109.47234 * 120.00682 * 2 1 3 5 5 C 1.35920 * 117.00333 * 82.57149 * 4 2 1 6 6 C 1.38856 * 120.40686 * 176.11556 * 5 4 2 7 7 N 1.31880 * 120.99901 * 180.02562 * 6 5 4 8 8 C 1.31679 * 121.94270 * 359.65737 * 7 6 5 9 9 C 1.39525 * 120.69151 * 0.63064 * 8 7 6 10 10 C 1.47850 * 120.53453 * 179.67849 * 9 8 7 11 11 O 1.21546 * 120.00026 * 179.73090 * 10 9 8 12 12 N 1.34776 * 119.99937 * 359.44832 * 10 9 8 13 13 C 1.46502 * 120.00010 * 180.27390 * 12 10 9 14 14 H 1.08997 * 108.46088 * 325.00585 * 13 12 10 15 15 C 1.52531 * 108.52189 * 207.29214 * 13 12 10 16 16 C 1.50306 * 105.33004 * 149.24379 * 15 13 12 17 17 C 1.54841 * 110.68879 * 97.83821 * 16 15 13 18 18 C 1.54897 * 110.14271 * 321.12975 * 17 16 15 19 19 N 1.43429 * 116.08375 * 318.64155 * 18 17 16 20 20 C 1.36938 * 120.53875 * 271.59169 * 19 18 17 21 21 H 1.08004 * 120.00304 * 335.10963 * 20 19 18 22 22 C 1.38817 * 120.00004 * 155.10155 * 20 19 18 23 23 N 1.31614 * 119.99789 * 341.86099 * 22 20 19 24 24 Si 1.86797 * 119.99909 * 161.85506 * 22 20 19 25 25 H 1.48510 * 109.47168 * 60.00413 * 24 22 20 26 26 H 1.48501 * 109.47208 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47319 * 300.00504 * 24 22 20 28 28 C 1.46232 * 108.52229 * 82.71818 * 13 12 10 29 29 C 1.38836 * 120.40512 * 356.14417 * 5 4 2 30 30 H 1.09001 * 109.47782 * 59.99153 * 1 2 3 31 31 H 1.09004 * 109.47103 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46834 * 299.99390 * 1 2 3 33 33 H 1.09003 * 109.46337 * 240.00595 * 2 1 3 34 34 H 1.09000 * 109.46809 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47441 * 300.00190 * 3 2 1 36 36 H 1.09003 * 109.47152 * 60.01094 * 3 2 1 37 37 H 1.08004 * 119.49931 * 0.02668 * 6 5 4 38 38 H 1.07999 * 119.65619 * 180.34282 * 8 7 6 39 39 H 0.96997 * 119.99537 * 0.28570 * 12 10 9 40 40 H 1.08997 * 110.24661 * 268.33073 * 15 13 12 41 41 H 1.09005 * 110.25092 * 30.38211 * 15 13 12 42 42 H 1.09000 * 109.27107 * 337.53020 * 16 15 13 43 43 H 1.08998 * 109.23125 * 218.12190 * 16 15 13 44 44 H 1.09009 * 109.35513 * 200.92532 * 17 16 15 45 45 H 1.08998 * 109.25047 * 81.27286 * 17 16 15 46 46 H 1.09004 * 108.15748 * 196.92104 * 18 17 16 47 47 H 1.08997 * 108.15973 * 80.36164 * 18 17 16 48 48 H 0.97007 * 119.99491 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.84397 * 299.15699 * 28 13 12 50 50 H 1.09007 * 109.84584 * 60.13915 * 28 13 12 51 51 H 1.08006 * 120.88182 * 359.95305 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 2.0644 -2.0307 1.1151 6 6 2.5913 -2.7524 2.1779 7 7 2.6538 -4.0692 2.1402 8 6 2.2179 -4.7580 1.1060 9 6 1.6796 -4.1093 -0.0059 10 6 1.1977 -4.8858 -1.1681 11 8 0.7259 -4.3110 -2.1296 12 7 1.2867 -6.2306 -1.1639 13 6 0.8148 -6.9996 -2.3181 14 1 -0.0579 -6.4966 -2.7345 15 6 0.3926 -8.3844 -1.8378 16 6 -0.7135 -8.8061 -2.7640 17 6 -0.1691 -9.7290 -3.8818 18 6 1.2202 -9.2325 -4.3538 19 7 1.3673 -7.8130 -4.4974 20 6 1.0537 -7.1971 -5.6796 21 1 1.0844 -7.7548 -6.6040 22 6 0.6963 -5.8557 -5.6899 23 7 0.3118 -5.2686 -4.5765 24 14 0.7613 -4.8841 -7.2840 25 1 -0.1485 -5.5054 -8.2799 26 1 0.3348 -3.4848 -7.0286 27 1 2.1496 -4.8896 -7.8109 28 6 1.8701 -7.0132 -3.3302 29 6 1.5982 -2.7121 -0.0011 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 2.9555 -2.2275 3.0487 38 1 2.2821 -5.8360 1.1165 39 1 1.6632 -6.6892 -0.3966 40 1 1.2301 -9.0787 -1.9056 41 1 0.0258 -8.3326 -0.8126 42 1 -1.1613 -7.9211 -3.2159 43 1 -1.4735 -9.3418 -2.1951 44 1 -0.8606 -9.7225 -4.7244 45 1 -0.0782 -10.7446 -3.4968 46 1 1.4374 -9.6957 -5.3164 47 1 1.9661 -9.5808 -3.6395 48 1 0.0624 -4.3312 -4.5837 49 1 2.0914 -5.9942 -3.6477 50 1 2.7679 -7.4779 -2.9226 51 1 1.1828 -2.1782 -0.8430 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034344540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:23 Heat of formation + Delta-G solvation = -21.394390 kcal Electronic energy + Delta-G solvation = -31946.916499 eV Core-core repulsion = 27847.141988 eV Total energy + Delta-G solvation = -4099.774510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99313 -40.78506 -39.57970 -38.80808 -35.78423 -34.85601 -34.36792 -33.46599 -32.61181 -31.86430 -30.60080 -28.28079 -27.93893 -26.04959 -25.73178 -24.92270 -24.30422 -22.18800 -21.96981 -21.37872 -20.45535 -19.57330 -18.54158 -18.03164 -17.87496 -17.56752 -16.84705 -16.70097 -16.58461 -16.05156 -15.71174 -15.44278 -15.38241 -15.13438 -15.00373 -14.83562 -14.40806 -14.01041 -13.95926 -13.89793 -13.53555 -13.44301 -13.34662 -13.16876 -13.15976 -13.02646 -12.89506 -12.62542 -12.43088 -12.07539 -12.06392 -11.89153 -11.81993 -11.61654 -11.30755 -11.20204 -11.17315 -11.07059 -10.82489 -10.46359 -10.34389 -9.81939 -9.52859 -8.52216 -7.66150 -5.13874 -0.39680 0.10279 1.44318 1.47017 1.52275 1.97253 2.02958 2.30040 2.58261 2.83562 3.32914 3.41699 3.51758 3.70138 3.72967 3.79180 3.85421 3.94346 3.99659 4.04687 4.07048 4.24905 4.31893 4.41538 4.61124 4.63502 4.68676 4.69803 4.74836 4.76027 4.82019 4.86968 4.88087 4.93370 4.96118 5.08178 5.12901 5.20980 5.27009 5.31525 5.39068 5.46339 5.47190 5.66363 5.67036 5.78397 5.91622 6.00712 6.11533 6.50605 6.74799 6.83463 7.25439 7.58793 7.99327 8.49214 9.31311 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011242 B = 0.003465 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.047067 B = 8078.302539 C = 9978.659101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.067 3.933 3 C -0.141 4.141 4 O -0.303 6.303 5 C 0.076 3.924 6 C 0.093 3.907 7 N -0.456 5.456 8 C 0.095 3.905 9 C -0.146 4.146 10 C 0.534 3.466 11 O -0.528 6.528 12 N -0.711 5.711 13 C 0.142 3.858 14 H 0.084 0.916 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.137 4.137 18 C 0.150 3.850 19 N -0.596 5.596 20 C -0.285 4.285 21 H 0.057 0.943 22 C -0.033 4.033 23 N -0.867 5.867 24 Si 0.940 3.060 25 H -0.281 1.281 26 H -0.302 1.302 27 H -0.286 1.286 28 C 0.166 3.834 29 C -0.125 4.125 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.195 0.805 38 H 0.186 0.814 39 H 0.403 0.597 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.066 0.934 44 H 0.033 0.967 45 H 0.081 0.919 46 H 0.025 0.975 47 H 0.049 0.951 48 H 0.246 0.754 49 H 0.050 0.950 50 H 0.020 0.980 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 4.656 16.187 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.011 3.989 3 C -0.198 4.198 4 O -0.216 6.216 5 C 0.028 3.972 6 C -0.065 4.065 7 N -0.164 5.164 8 C -0.063 4.063 9 C -0.151 4.151 10 C 0.318 3.682 11 O -0.404 6.404 12 N -0.365 5.365 13 C 0.037 3.963 14 H 0.101 0.899 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.177 4.177 18 C 0.022 3.978 19 N -0.318 5.318 20 C -0.415 4.415 21 H 0.075 0.925 22 C -0.233 4.233 23 N -0.508 5.508 24 Si 0.770 3.230 25 H -0.207 1.207 26 H -0.229 1.229 27 H -0.213 1.213 28 C 0.041 3.959 29 C -0.153 4.153 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.212 0.788 38 H 0.203 0.797 39 H 0.240 0.760 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.046 0.954 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.099 0.901 46 H 0.043 0.957 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.038 0.962 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.113 4.938 16.330 17.342 hybrid contribution -0.625 1.009 -2.101 2.413 sum 2.488 5.948 14.229 15.622 Atomic orbital electron populations 1.22381 0.94513 1.02393 1.04337 1.22714 0.94952 0.94965 0.86255 1.21843 1.02218 0.91377 1.04340 1.86119 1.80834 1.14273 1.40393 1.20105 0.97495 0.84502 0.95084 1.22823 0.97010 0.89077 0.97628 1.67806 1.15155 1.07448 1.25998 1.23153 0.94151 1.01462 0.87485 1.21046 1.03082 0.94262 0.96745 1.18479 0.79813 0.83423 0.86470 1.90974 1.44096 1.70120 1.35201 1.46150 1.63799 1.05548 1.21006 1.20766 0.99940 0.91140 0.84418 0.89853 1.21344 0.99331 0.95185 0.99064 1.21246 0.97575 0.98759 0.96354 1.22816 0.99019 0.98609 0.97297 1.20579 0.94816 0.84319 0.98098 1.44103 1.74513 1.02739 1.10471 1.19123 1.42107 0.94180 0.86092 0.92510 1.25591 0.99818 0.99443 0.98464 1.70034 1.44542 1.10931 1.25325 0.85788 0.77476 0.77863 0.81834 1.20667 1.22915 1.21316 1.20256 0.92772 0.96030 0.86845 1.21919 1.00244 0.94271 0.98817 0.89662 0.93819 0.90232 0.92017 0.91416 0.88931 0.90418 0.78842 0.79709 0.76002 0.90171 0.89786 0.95448 0.91583 0.94833 0.90054 0.95665 0.93239 0.94397 0.93155 0.96157 0.84432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 9.14 71.98 0.66 -2.88 16 2 C 0.07 1.36 2.86 30.59 0.09 1.45 16 3 C -0.14 -2.03 9.56 71.98 0.69 -1.34 16 4 O -0.30 -6.85 9.82 -92.65 -0.91 -7.76 16 5 C 0.08 1.90 6.59 22.56 0.15 2.05 16 6 C 0.09 2.05 11.13 84.83 0.94 3.00 16 7 N -0.46 -10.87 10.34 -194.39 -2.01 -12.88 16 8 C 0.10 2.33 10.71 85.03 0.91 3.24 16 9 C -0.15 -4.48 5.89 -20.01 -0.12 -4.60 16 10 C 0.53 20.46 7.62 86.79 0.66 21.12 16 11 O -0.53 -25.92 13.60 -3.86 -0.05 -25.98 16 12 N -0.71 -23.89 4.86 -456.21 -2.22 -26.11 16 13 C 0.14 5.73 1.81 42.75 0.08 5.81 16 14 H 0.08 4.31 4.59 -2.39 -0.01 4.30 16 15 C -0.11 -3.52 5.24 29.57 0.15 -3.36 16 16 C -0.10 -3.57 5.66 30.35 0.17 -3.40 16 17 C -0.14 -4.76 6.41 31.87 0.20 -4.55 16 18 C 0.15 5.96 5.17 87.60 0.45 6.41 16 19 N -0.60 -29.14 2.60 -707.86 -1.84 -30.98 16 20 C -0.28 -15.82 9.62 84.03 0.81 -15.01 16 21 H 0.06 3.17 7.88 -2.91 -0.02 3.14 16 22 C -0.03 -1.88 4.93 84.86 0.42 -1.46 16 23 N -0.87 -50.84 7.56 21.65 0.16 -50.68 16 24 Si 0.94 46.81 29.59 68.60 2.03 48.84 16 25 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 26 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 C 0.17 7.69 4.63 83.58 0.39 8.08 16 29 C -0.13 -3.75 7.79 22.83 0.18 -3.58 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.05 6.77 -2.39 -0.02 1.04 16 32 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.06 1.45 6.42 -2.39 -0.02 1.43 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 38 H 0.19 3.36 6.42 -2.91 -0.02 3.34 16 39 H 0.40 9.81 6.64 -92.71 -0.62 9.20 16 40 H 0.08 2.30 6.27 -2.39 -0.01 2.28 16 41 H 0.08 2.17 8.03 -2.38 -0.02 2.15 16 42 H 0.03 1.23 6.82 -2.39 -0.02 1.21 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.02 1.02 7.99 -2.38 -0.02 1.00 16 47 H 0.05 1.73 6.88 -2.39 -0.02 1.71 16 48 H 0.25 14.98 8.02 -92.70 -0.74 14.24 16 49 H 0.05 2.81 5.77 -2.39 -0.01 2.80 16 50 H 0.02 0.86 8.12 -2.38 -0.02 0.84 16 51 H 0.14 4.50 5.22 -2.91 -0.02 4.48 16 Total: -1.00 -70.62 389.48 2.36 -68.26 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.36 Total: 26.34 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 6.83 Total: 10.96 kcal Atomic # 7 Polarization: -114.75 SS G_CDS: -5.90 Total: -120.65 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.96 Total: -33.74 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -70.62 2.36 -68.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034344540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.861 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds