Wall clock time and date at job start Wed Apr 1 2020 05:03:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52997 * 109.47399 * 2 1
4 4 O 1.42896 * 109.47252 * 180.02562 * 3 2 1
5 5 C 1.35650 * 116.99843 * 179.97438 * 4 3 2
6 6 C 1.39341 * 120.54431 * 0.02562 * 5 4 3
7 7 C 1.38297 * 118.44364 * 179.97438 * 6 5 4
8 8 C 1.38767 * 119.44218 * 359.97438 * 7 6 5
9 9 N 1.31372 * 121.06905 * 359.71743 * 8 7 6
10 10 C 1.32855 * 121.69409 * 0.57440 * 9 8 7
11 11 C 1.47830 * 119.78402 * 179.70762 * 10 9 8
12 12 O 1.21563 * 120.00206 * 179.72989 * 11 10 9
13 13 N 1.34778 * 120.00200 * 359.72535 * 11 10 9
14 14 C 1.46499 * 120.00326 * 180.02562 * 13 11 10
15 15 H 1.09001 * 109.24504 * 324.65895 * 14 13 11
16 16 C 1.54839 * 109.35822 * 205.00159 * 14 13 11
17 17 C 1.50134 * 110.81390 * 200.92577 * 16 14 13
18 18 C 1.52529 * 105.41354 * 97.68270 * 17 16 14
19 19 C 1.46243 * 114.27473 * 270.59047 * 18 17 16
20 20 N 1.50170 * 107.53210 * 58.41347 * 19 18 17
21 21 C 1.36933 * 120.53876 * 109.56279 * 20 19 18
22 22 H 1.08001 * 119.99952 * 156.67778 * 21 20 19
23 23 C 1.38807 * 120.00199 * 336.68084 * 21 20 19
24 24 N 1.31627 * 120.00085 * 340.30112 * 23 21 20
25 25 Si 1.86797 * 120.00165 * 160.30073 * 23 21 20
26 26 H 1.48498 * 109.47188 * 266.02049 * 25 23 21
27 27 H 1.48503 * 109.47057 * 146.01989 * 25 23 21
28 28 H 1.48494 * 109.47116 * 26.02357 * 25 23 21
29 29 C 1.43436 * 118.92429 * 289.83665 * 20 19 18
30 30 H 1.09000 * 109.47462 * 300.01077 * 1 2 3
31 31 H 1.09000 * 109.47193 * 60.00283 * 1 2 3
32 32 H 1.08993 * 109.47444 * 180.02562 * 1 2 3
33 33 H 1.08994 * 109.47263 * 239.99316 * 2 1 3
34 34 H 1.09006 * 109.46762 * 119.98940 * 2 1 3
35 35 H 1.09000 * 109.47692 * 59.99064 * 3 2 1
36 36 H 1.09012 * 109.46528 * 299.99619 * 3 2 1
37 37 H 1.08006 * 120.77685 * 359.95247 * 6 5 4
38 38 H 1.08000 * 120.28324 * 180.02562 * 7 6 5
39 39 H 1.08003 * 119.46284 * 180.02562 * 8 7 6
40 40 H 0.96996 * 119.99753 * 359.97438 * 13 11 10
41 41 H 1.09000 * 109.21078 * 80.58180 * 16 14 13
42 42 H 1.08997 * 109.20792 * 321.26207 * 16 14 13
43 43 H 1.08998 * 110.25063 * 338.70831 * 17 16 14
44 44 H 1.09001 * 110.36989 * 216.71618 * 17 16 14
45 45 H 1.08995 * 108.52238 * 149.35470 * 18 17 16
46 46 H 1.08997 * 108.40305 * 31.74399 * 18 17 16
47 47 H 1.08990 * 109.84758 * 298.90085 * 19 18 17
48 48 H 1.08997 * 109.89745 * 177.94930 * 19 18 17
49 49 H 0.96996 * 120.00447 * 179.97438 * 24 23 21
50 50 H 1.08991 * 108.16323 * 213.03339 * 29 20 19
51 51 H 1.09001 * 108.15805 * 329.60206 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 3.4690 1.4424 -0.0006
5 6 4.0848 2.6511 -0.0012
6 6 3.3371 3.8268 -0.0007
7 6 4.0097 5.0352 -0.0008
8 6 5.3973 5.0435 -0.0009
9 7 6.0820 3.9223 0.0047
10 6 5.4810 2.7375 -0.0007
11 6 6.2931 1.5022 -0.0006
12 8 5.7474 0.4160 -0.0006
13 7 7.6387 1.5803 -0.0006
14 6 8.4435 0.3562 -0.0011
15 1 7.9395 -0.4054 0.5939
16 6 9.8318 0.6544 0.6164
17 6 10.8374 -0.3759 0.1908
18 6 11.5890 0.2503 -0.9795
19 6 10.9885 -0.0090 -2.2875
20 7 9.5851 0.5242 -2.2547
21 6 9.2470 1.6381 -2.9758
22 1 8.2187 1.8054 -3.2607
23 6 10.2257 2.5523 -3.3405
24 7 11.3737 2.5793 -2.6971
25 14 9.9138 3.7443 -4.7445
26 1 10.4475 3.1728 -6.0069
27 1 10.5927 5.0339 -4.4590
28 1 8.4534 3.9740 -4.8836
29 6 8.6058 -0.1488 -1.4512
30 1 -0.3634 0.5140 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3634 -1.0276 0.0005
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5137 0.8901
35 1 1.6766 1.9564 0.8899
36 1 1.6767 1.9562 -0.8901
37 1 2.2575 3.7952 -0.0006
38 1 3.4596 5.9647 0.0000
39 1 5.9229 5.9870 -0.0006
40 1 8.0741 2.4470 -0.0011
41 1 9.7498 0.6480 1.7032
42 1 10.1661 1.6386 0.2884
43 1 10.3318 -1.2868 -0.1296
44 1 11.5255 -0.5945 1.0074
45 1 12.6079 -0.1366 -0.9835
46 1 11.6298 1.3285 -0.8248
47 1 10.9725 -1.0815 -2.4812
48 1 11.5592 0.4988 -3.0649
49 1 12.0578 3.2178 -2.9522
50 1 7.6395 -0.0589 -1.9472
51 1 8.8656 -1.2067 -1.4144
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034379933.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:03:31
Heat of formation + Delta-G solvation = -13.147190 kcal
Electronic energy + Delta-G solvation = -32007.914477 eV
Core-core repulsion = 27908.497592 eV
Total energy + Delta-G solvation = -4099.416885 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-40.82996 -38.96089 -38.30913 -37.37889 -34.26483 -33.94848 -33.01984 -32.37572
-30.90456 -30.55958 -29.55424 -26.88429 -26.09188 -24.88312 -23.74537 -23.08838
-22.69231 -21.68481 -20.43012 -19.59905 -18.97709 -18.27071 -17.40262 -16.90269
-16.53854 -16.49332 -15.26959 -15.19516 -15.03924 -14.70424 -14.56310 -14.40679
-14.01953 -13.88028 -13.67118 -13.36286 -13.22354 -12.85205 -12.78826 -12.34948
-12.26293 -12.17532 -12.03053 -11.77428 -11.66727 -11.44492 -11.20330 -11.19220
-10.87199 -10.72103 -10.66609 -10.38761 -10.00779 -9.90123 -9.88642 -9.82843
-9.60964 -9.36150 -9.17690 -9.15923 -8.52970 -8.41440 -8.12441 -6.59760
-5.71707 -3.09217 0.74974 1.21391 2.97876 3.16012 3.42448 3.49838
3.51907 3.70375 4.10106 4.40656 4.49452 4.57660 4.63878 4.66329
4.71970 4.92544 4.99943 5.05239 5.12773 5.24302 5.37962 5.41153
5.48843 5.55054 5.59682 5.70841 5.75563 5.84127 5.86600 5.87766
5.98770 6.07356 6.23452 6.31378 6.35626 6.37576 6.54660 6.63765
6.71818 6.97644 7.02459 7.06735 7.14181 7.20232 7.35221 7.38613
7.68999 7.81786 7.84335 8.07442 8.33471 8.51244 8.91223 9.27868
9.94962 10.48047 11.35178
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010851 B = 0.003526 C = 0.003100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2579.846960 B = 7939.871340 C = 9030.476135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.123 4.123
3 C 0.051 3.949
4 O -0.269 6.269
5 C 0.134 3.866
6 C -0.180 4.180
7 C -0.115 4.115
8 C 0.057 3.943
9 N -0.412 5.412
10 C 0.056 3.944
11 C 0.565 3.435
12 O -0.533 6.533
13 N -0.681 5.681
14 C 0.117 3.883
15 H 0.071 0.929
16 C -0.110 4.110
17 C -0.112 4.112
18 C -0.130 4.130
19 C 0.165 3.835
20 N -0.582 5.582
21 C -0.235 4.235
22 H 0.063 0.937
23 C 0.003 3.997
24 N -0.900 5.900
25 Si 0.896 3.104
26 H -0.291 1.291
27 H -0.293 1.293
28 H -0.282 1.282
29 C 0.151 3.849
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.064 0.936
33 H 0.077 0.923
34 H 0.076 0.924
35 H 0.060 0.940
36 H 0.061 0.939
37 H 0.142 0.858
38 H 0.140 0.860
39 H 0.163 0.837
40 H 0.410 0.590
41 H 0.038 0.962
42 H 0.081 0.919
43 H 0.057 0.943
44 H 0.048 0.952
45 H 0.024 0.976
46 H 0.101 0.899
47 H 0.004 0.996
48 H 0.089 0.911
49 H 0.251 0.749
50 H 0.037 0.963
51 H 0.036 0.964
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.957 1.371 8.389 18.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.160 4.160
3 C -0.025 4.025
4 O -0.179 6.179
5 C 0.083 3.917
6 C -0.207 4.207
7 C -0.135 4.135
8 C -0.103 4.103
9 N -0.124 5.124
10 C -0.084 4.084
11 C 0.349 3.651
12 O -0.410 6.410
13 N -0.331 5.331
14 C 0.010 3.990
15 H 0.089 0.911
16 C -0.148 4.148
17 C -0.150 4.150
18 C -0.169 4.169
19 C 0.041 3.959
20 N -0.303 5.303
21 C -0.365 4.365
22 H 0.081 0.919
23 C -0.195 4.195
24 N -0.546 5.546
25 Si 0.727 3.273
26 H -0.218 1.218
27 H -0.220 1.220
28 H -0.208 1.208
29 C 0.021 3.979
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.083 0.917
33 H 0.096 0.904
34 H 0.095 0.905
35 H 0.078 0.922
36 H 0.079 0.921
37 H 0.159 0.841
38 H 0.157 0.843
39 H 0.180 0.820
40 H 0.246 0.754
41 H 0.057 0.943
42 H 0.099 0.901
43 H 0.075 0.925
44 H 0.067 0.933
45 H 0.042 0.958
46 H 0.119 0.881
47 H 0.023 0.977
48 H 0.107 0.893
49 H 0.061 0.939
50 H 0.055 0.945
51 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -15.192 0.452 8.330 17.332
hybrid contribution -1.061 1.609 -0.699 2.050
sum -16.253 2.061 7.632 18.074
Atomic orbital electron populations
1.21691 0.94436 1.02507 1.01918 1.21447 0.95528 0.94632 1.04407
1.22994 0.79108 0.99391 1.01013 1.86427 1.20357 1.24664 1.86408
1.20024 0.92364 0.85535 0.93736 1.21687 1.00762 0.91960 1.06252
1.22152 0.95815 0.98218 0.97294 1.22717 0.91251 0.96569 0.99780
1.67705 1.39746 0.97375 1.07551 1.20960 0.88540 0.93275 1.05603
1.17515 0.82678 0.86880 0.78049 1.90777 1.71912 1.27404 1.50953
1.45844 1.04817 1.11045 1.71353 1.22734 0.90040 0.85813 1.00435
0.91052 1.21667 0.94204 1.01377 0.97559 1.20974 0.97479 0.98022
0.98502 1.21011 0.96168 1.04077 0.95627 1.20167 0.85473 0.93086
0.97123 1.44266 1.06417 1.30383 1.49237 1.19158 0.94054 0.98003
1.25285 0.91888 1.24828 0.97505 0.97299 0.99860 1.69971 1.07045
1.37864 1.39675 0.86365 0.77470 0.80434 0.83076 1.21822 1.21994
1.20772 1.20701 0.93669 0.94323 0.89215 0.92562 0.92485 0.91699
0.90413 0.90543 0.92185 0.92110 0.84055 0.84266 0.81952 0.75434
0.94313 0.90090 0.92467 0.93310 0.95756 0.88095 0.97743 0.89337
0.93924 0.94485 0.94579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16
2 C -0.12 -1.18 6.30 -26.73 -0.17 -1.34 16
3 C 0.05 0.53 4.76 37.16 0.18 0.71 16
4 O -0.27 -4.20 8.20 -40.60 -0.33 -4.53 16
5 C 0.13 2.08 6.71 -38.55 -0.26 1.82 16
6 C -0.18 -2.06 9.13 -39.15 -0.36 -2.42 16
7 C -0.11 -1.19 10.10 -39.36 -0.40 -1.59 16
8 C 0.06 0.73 11.17 -17.55 -0.20 0.53 16
9 N -0.41 -6.90 9.54 -9.71 -0.09 -6.99 16
10 C 0.06 1.01 6.76 -82.88 -0.56 0.44 16
11 C 0.56 11.57 7.61 -12.34 -0.09 11.48 16
12 O -0.53 -11.92 14.80 -16.64 -0.25 -12.17 16
13 N -0.68 -13.82 5.07 -53.10 -0.27 -14.09 16
14 C 0.12 2.36 2.91 -66.22 -0.19 2.17 16
15 H 0.07 1.42 7.57 -51.93 -0.39 1.03 16
16 C -0.11 -2.09 5.23 -27.19 -0.14 -2.23 16
17 C -0.11 -2.06 5.76 -28.40 -0.16 -2.22 16
18 C -0.13 -2.76 5.02 -30.18 -0.15 -2.92 16
19 C 0.16 3.85 5.25 -5.20 -0.03 3.82 16
20 N -0.58 -14.28 2.61 -175.41 -0.46 -14.74 16
21 C -0.24 -6.34 9.62 -15.06 -0.14 -6.48 16
22 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16
23 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16
24 N -0.90 -24.39 9.43 55.49 0.52 -23.87 16
25 Si 0.90 21.80 29.60 -169.99 -5.03 16.77 16
26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16
28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16
29 C 0.15 3.37 4.75 -4.92 -0.02 3.35 16
30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16
31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16
34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16
35 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16
36 H 0.06 0.55 7.70 -51.92 -0.40 0.15 16
37 H 0.14 1.16 6.46 -52.48 -0.34 0.82 16
38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16
39 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16
40 H 0.41 8.46 7.77 -40.82 -0.32 8.14 16
41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.08 1.76 6.58 -51.93 -0.34 1.41 16
43 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16
44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16
46 H 0.10 2.45 5.28 -51.93 -0.27 2.17 16
47 H 0.00 0.10 8.13 -51.93 -0.42 -0.32 16
48 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16
49 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16
50 H 0.04 0.90 7.80 -51.93 -0.41 0.50 16
51 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16
LS Contribution 398.15 15.07 6.00 6.00
Total: -1.00 -31.02 398.15 -10.39 -41.42
By element:
Atomic # 1 Polarization: 15.81 SS G_CDS: -8.07 Total: 7.74 kcal
Atomic # 6 Polarization: 6.89 SS G_CDS: -2.42 Total: 4.47 kcal
Atomic # 7 Polarization: -59.40 SS G_CDS: -0.30 Total: -59.69 kcal
Atomic # 8 Polarization: -16.12 SS G_CDS: -0.58 Total: -16.70 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal
Total LS contribution 6.00 Total: 6.00 kcal
Total: -31.02 -10.39 -41.42 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034379933.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.268 kcal
(2) G-P(sol) polarization free energy of solvation -31.022 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.754 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.147 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.16 seconds