Wall clock time and date at job start Wed Apr 1 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47399 * 2 1 4 4 O 1.42896 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.35650 * 116.99843 * 179.97438 * 4 3 2 6 6 C 1.39341 * 120.54431 * 0.02562 * 5 4 3 7 7 C 1.38297 * 118.44364 * 179.97438 * 6 5 4 8 8 C 1.38767 * 119.44218 * 359.97438 * 7 6 5 9 9 N 1.31372 * 121.06905 * 359.71743 * 8 7 6 10 10 C 1.32855 * 121.69409 * 0.57440 * 9 8 7 11 11 C 1.47830 * 119.78402 * 179.70762 * 10 9 8 12 12 O 1.21563 * 120.00206 * 179.72989 * 11 10 9 13 13 N 1.34778 * 120.00200 * 359.72535 * 11 10 9 14 14 C 1.46499 * 120.00326 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.24504 * 324.65895 * 14 13 11 16 16 C 1.54839 * 109.35822 * 205.00159 * 14 13 11 17 17 C 1.50134 * 110.81390 * 200.92577 * 16 14 13 18 18 C 1.52529 * 105.41354 * 97.68270 * 17 16 14 19 19 C 1.46243 * 114.27473 * 270.59047 * 18 17 16 20 20 N 1.50170 * 107.53210 * 58.41347 * 19 18 17 21 21 C 1.36933 * 120.53876 * 109.56279 * 20 19 18 22 22 H 1.08001 * 119.99952 * 156.67778 * 21 20 19 23 23 C 1.38807 * 120.00199 * 336.68084 * 21 20 19 24 24 N 1.31627 * 120.00085 * 340.30112 * 23 21 20 25 25 Si 1.86797 * 120.00165 * 160.30073 * 23 21 20 26 26 H 1.48498 * 109.47188 * 266.02049 * 25 23 21 27 27 H 1.48503 * 109.47057 * 146.01989 * 25 23 21 28 28 H 1.48494 * 109.47116 * 26.02357 * 25 23 21 29 29 C 1.43436 * 118.92429 * 289.83665 * 20 19 18 30 30 H 1.09000 * 109.47462 * 300.01077 * 1 2 3 31 31 H 1.09000 * 109.47193 * 60.00283 * 1 2 3 32 32 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47263 * 239.99316 * 2 1 3 34 34 H 1.09006 * 109.46762 * 119.98940 * 2 1 3 35 35 H 1.09000 * 109.47692 * 59.99064 * 3 2 1 36 36 H 1.09012 * 109.46528 * 299.99619 * 3 2 1 37 37 H 1.08006 * 120.77685 * 359.95247 * 6 5 4 38 38 H 1.08000 * 120.28324 * 180.02562 * 7 6 5 39 39 H 1.08003 * 119.46284 * 180.02562 * 8 7 6 40 40 H 0.96996 * 119.99753 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.21078 * 80.58180 * 16 14 13 42 42 H 1.08997 * 109.20792 * 321.26207 * 16 14 13 43 43 H 1.08998 * 110.25063 * 338.70831 * 17 16 14 44 44 H 1.09001 * 110.36989 * 216.71618 * 17 16 14 45 45 H 1.08995 * 108.52238 * 149.35470 * 18 17 16 46 46 H 1.08997 * 108.40305 * 31.74399 * 18 17 16 47 47 H 1.08990 * 109.84758 * 298.90085 * 19 18 17 48 48 H 1.08997 * 109.89745 * 177.94930 * 19 18 17 49 49 H 0.96996 * 120.00447 * 179.97438 * 24 23 21 50 50 H 1.08991 * 108.16323 * 213.03339 * 29 20 19 51 51 H 1.09001 * 108.15805 * 329.60206 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0848 2.6511 -0.0012 6 6 3.3371 3.8268 -0.0007 7 6 4.0097 5.0352 -0.0008 8 6 5.3973 5.0435 -0.0009 9 7 6.0820 3.9223 0.0047 10 6 5.4810 2.7375 -0.0007 11 6 6.2931 1.5022 -0.0006 12 8 5.7474 0.4160 -0.0006 13 7 7.6387 1.5803 -0.0006 14 6 8.4435 0.3562 -0.0011 15 1 7.9395 -0.4054 0.5939 16 6 9.8318 0.6544 0.6164 17 6 10.8374 -0.3759 0.1908 18 6 11.5890 0.2503 -0.9795 19 6 10.9885 -0.0090 -2.2875 20 7 9.5851 0.5242 -2.2547 21 6 9.2470 1.6381 -2.9758 22 1 8.2187 1.8054 -3.2607 23 6 10.2257 2.5523 -3.3405 24 7 11.3737 2.5793 -2.6971 25 14 9.9138 3.7443 -4.7445 26 1 10.4475 3.1728 -6.0069 27 1 10.5927 5.0339 -4.4590 28 1 8.4534 3.9740 -4.8836 29 6 8.6058 -0.1488 -1.4512 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 2.2575 3.7952 -0.0006 38 1 3.4596 5.9647 0.0000 39 1 5.9229 5.9870 -0.0006 40 1 8.0741 2.4470 -0.0011 41 1 9.7498 0.6480 1.7032 42 1 10.1661 1.6386 0.2884 43 1 10.3318 -1.2868 -0.1296 44 1 11.5255 -0.5945 1.0074 45 1 12.6079 -0.1366 -0.9835 46 1 11.6298 1.3285 -0.8248 47 1 10.9725 -1.0815 -2.4812 48 1 11.5592 0.4988 -3.0649 49 1 12.0578 3.2178 -2.9522 50 1 7.6395 -0.0589 -1.9472 51 1 8.8656 -1.2067 -1.4144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034379933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:31 Heat of formation + Delta-G solvation = -13.147190 kcal Electronic energy + Delta-G solvation = -32007.914477 eV Core-core repulsion = 27908.497592 eV Total energy + Delta-G solvation = -4099.416885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.82996 -38.96089 -38.30913 -37.37889 -34.26483 -33.94848 -33.01984 -32.37572 -30.90456 -30.55958 -29.55424 -26.88429 -26.09188 -24.88312 -23.74537 -23.08838 -22.69231 -21.68481 -20.43012 -19.59905 -18.97709 -18.27071 -17.40262 -16.90269 -16.53854 -16.49332 -15.26959 -15.19516 -15.03924 -14.70424 -14.56310 -14.40679 -14.01953 -13.88028 -13.67118 -13.36286 -13.22354 -12.85205 -12.78826 -12.34948 -12.26293 -12.17532 -12.03053 -11.77428 -11.66727 -11.44492 -11.20330 -11.19220 -10.87199 -10.72103 -10.66609 -10.38761 -10.00779 -9.90123 -9.88642 -9.82843 -9.60964 -9.36150 -9.17690 -9.15923 -8.52970 -8.41440 -8.12441 -6.59760 -5.71707 -3.09217 0.74974 1.21391 2.97876 3.16012 3.42448 3.49838 3.51907 3.70375 4.10106 4.40656 4.49452 4.57660 4.63878 4.66329 4.71970 4.92544 4.99943 5.05239 5.12773 5.24302 5.37962 5.41153 5.48843 5.55054 5.59682 5.70841 5.75563 5.84127 5.86600 5.87766 5.98770 6.07356 6.23452 6.31378 6.35626 6.37576 6.54660 6.63765 6.71818 6.97644 7.02459 7.06735 7.14181 7.20232 7.35221 7.38613 7.68999 7.81786 7.84335 8.07442 8.33471 8.51244 8.91223 9.27868 9.94962 10.48047 11.35178 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.003526 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.846960 B = 7939.871340 C = 9030.476135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.051 3.949 4 O -0.269 6.269 5 C 0.134 3.866 6 C -0.180 4.180 7 C -0.115 4.115 8 C 0.057 3.943 9 N -0.412 5.412 10 C 0.056 3.944 11 C 0.565 3.435 12 O -0.533 6.533 13 N -0.681 5.681 14 C 0.117 3.883 15 H 0.071 0.929 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.130 4.130 19 C 0.165 3.835 20 N -0.582 5.582 21 C -0.235 4.235 22 H 0.063 0.937 23 C 0.003 3.997 24 N -0.900 5.900 25 Si 0.896 3.104 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.282 1.282 29 C 0.151 3.849 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.163 0.837 40 H 0.410 0.590 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.024 0.976 46 H 0.101 0.899 47 H 0.004 0.996 48 H 0.089 0.911 49 H 0.251 0.749 50 H 0.037 0.963 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 1.371 8.389 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.025 4.025 4 O -0.179 6.179 5 C 0.083 3.917 6 C -0.207 4.207 7 C -0.135 4.135 8 C -0.103 4.103 9 N -0.124 5.124 10 C -0.084 4.084 11 C 0.349 3.651 12 O -0.410 6.410 13 N -0.331 5.331 14 C 0.010 3.990 15 H 0.089 0.911 16 C -0.148 4.148 17 C -0.150 4.150 18 C -0.169 4.169 19 C 0.041 3.959 20 N -0.303 5.303 21 C -0.365 4.365 22 H 0.081 0.919 23 C -0.195 4.195 24 N -0.546 5.546 25 Si 0.727 3.273 26 H -0.218 1.218 27 H -0.220 1.220 28 H -0.208 1.208 29 C 0.021 3.979 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.180 0.820 40 H 0.246 0.754 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.119 0.881 47 H 0.023 0.977 48 H 0.107 0.893 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.192 0.452 8.330 17.332 hybrid contribution -1.061 1.609 -0.699 2.050 sum -16.253 2.061 7.632 18.074 Atomic orbital electron populations 1.21691 0.94436 1.02507 1.01918 1.21447 0.95528 0.94632 1.04407 1.22994 0.79108 0.99391 1.01013 1.86427 1.20357 1.24664 1.86408 1.20024 0.92364 0.85535 0.93736 1.21687 1.00762 0.91960 1.06252 1.22152 0.95815 0.98218 0.97294 1.22717 0.91251 0.96569 0.99780 1.67705 1.39746 0.97375 1.07551 1.20960 0.88540 0.93275 1.05603 1.17515 0.82678 0.86880 0.78049 1.90777 1.71912 1.27404 1.50953 1.45844 1.04817 1.11045 1.71353 1.22734 0.90040 0.85813 1.00435 0.91052 1.21667 0.94204 1.01377 0.97559 1.20974 0.97479 0.98022 0.98502 1.21011 0.96168 1.04077 0.95627 1.20167 0.85473 0.93086 0.97123 1.44266 1.06417 1.30383 1.49237 1.19158 0.94054 0.98003 1.25285 0.91888 1.24828 0.97505 0.97299 0.99860 1.69971 1.07045 1.37864 1.39675 0.86365 0.77470 0.80434 0.83076 1.21822 1.21994 1.20772 1.20701 0.93669 0.94323 0.89215 0.92562 0.92485 0.91699 0.90413 0.90543 0.92185 0.92110 0.84055 0.84266 0.81952 0.75434 0.94313 0.90090 0.92467 0.93310 0.95756 0.88095 0.97743 0.89337 0.93924 0.94485 0.94579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -1.18 6.30 -26.73 -0.17 -1.34 16 3 C 0.05 0.53 4.76 37.16 0.18 0.71 16 4 O -0.27 -4.20 8.20 -40.60 -0.33 -4.53 16 5 C 0.13 2.08 6.71 -38.55 -0.26 1.82 16 6 C -0.18 -2.06 9.13 -39.15 -0.36 -2.42 16 7 C -0.11 -1.19 10.10 -39.36 -0.40 -1.59 16 8 C 0.06 0.73 11.17 -17.55 -0.20 0.53 16 9 N -0.41 -6.90 9.54 -9.71 -0.09 -6.99 16 10 C 0.06 1.01 6.76 -82.88 -0.56 0.44 16 11 C 0.56 11.57 7.61 -12.34 -0.09 11.48 16 12 O -0.53 -11.92 14.80 -16.64 -0.25 -12.17 16 13 N -0.68 -13.82 5.07 -53.10 -0.27 -14.09 16 14 C 0.12 2.36 2.91 -66.22 -0.19 2.17 16 15 H 0.07 1.42 7.57 -51.93 -0.39 1.03 16 16 C -0.11 -2.09 5.23 -27.19 -0.14 -2.23 16 17 C -0.11 -2.06 5.76 -28.40 -0.16 -2.22 16 18 C -0.13 -2.76 5.02 -30.18 -0.15 -2.92 16 19 C 0.16 3.85 5.25 -5.20 -0.03 3.82 16 20 N -0.58 -14.28 2.61 -175.41 -0.46 -14.74 16 21 C -0.24 -6.34 9.62 -15.06 -0.14 -6.48 16 22 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 23 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 24 N -0.90 -24.39 9.43 55.49 0.52 -23.87 16 25 Si 0.90 21.80 29.60 -169.99 -5.03 16.77 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.15 3.37 4.75 -4.92 -0.02 3.35 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.51 7.70 -51.93 -0.40 0.11 16 36 H 0.06 0.55 7.70 -51.92 -0.40 0.15 16 37 H 0.14 1.16 6.46 -52.48 -0.34 0.82 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.41 8.46 7.77 -40.82 -0.32 8.14 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.76 6.58 -51.93 -0.34 1.41 16 43 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 2.45 5.28 -51.93 -0.27 2.17 16 47 H 0.00 0.10 8.13 -51.93 -0.42 -0.32 16 48 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 49 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 50 H 0.04 0.90 7.80 -51.93 -0.41 0.50 16 51 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 398.15 15.07 6.00 6.00 Total: -1.00 -31.02 398.15 -10.39 -41.42 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.07 Total: 7.74 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.42 Total: 4.47 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.30 Total: -59.69 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.58 Total: -16.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.02 -10.39 -41.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034379933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.268 kcal (2) G-P(sol) polarization free energy of solvation -31.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds