Wall clock time and date at job start Wed Apr 1 2020 05:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47399 * 2 1 4 4 O 1.42896 * 109.47252 * 180.02562 * 3 2 1 5 5 C 1.35650 * 116.99843 * 179.97438 * 4 3 2 6 6 C 1.39341 * 120.54431 * 0.02562 * 5 4 3 7 7 C 1.38297 * 118.44364 * 179.97438 * 6 5 4 8 8 C 1.38767 * 119.44218 * 359.97438 * 7 6 5 9 9 N 1.31372 * 121.06905 * 359.71743 * 8 7 6 10 10 C 1.32855 * 121.69409 * 0.57440 * 9 8 7 11 11 C 1.47830 * 119.78402 * 179.70762 * 10 9 8 12 12 O 1.21563 * 120.00206 * 179.72989 * 11 10 9 13 13 N 1.34778 * 120.00200 * 359.72535 * 11 10 9 14 14 C 1.46499 * 120.00326 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.24504 * 324.65895 * 14 13 11 16 16 C 1.54839 * 109.35822 * 205.00159 * 14 13 11 17 17 C 1.50134 * 110.81390 * 200.92577 * 16 14 13 18 18 C 1.52529 * 105.41354 * 97.68270 * 17 16 14 19 19 C 1.46243 * 114.27473 * 270.59047 * 18 17 16 20 20 N 1.50170 * 107.53210 * 58.41347 * 19 18 17 21 21 C 1.36933 * 120.53876 * 109.56279 * 20 19 18 22 22 H 1.08001 * 119.99952 * 156.67778 * 21 20 19 23 23 C 1.38807 * 120.00199 * 336.68084 * 21 20 19 24 24 N 1.31627 * 120.00085 * 340.30112 * 23 21 20 25 25 Si 1.86797 * 120.00165 * 160.30073 * 23 21 20 26 26 H 1.48498 * 109.47188 * 266.02049 * 25 23 21 27 27 H 1.48503 * 109.47057 * 146.01989 * 25 23 21 28 28 H 1.48494 * 109.47116 * 26.02357 * 25 23 21 29 29 C 1.43436 * 118.92429 * 289.83665 * 20 19 18 30 30 H 1.09000 * 109.47462 * 300.01077 * 1 2 3 31 31 H 1.09000 * 109.47193 * 60.00283 * 1 2 3 32 32 H 1.08993 * 109.47444 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47263 * 239.99316 * 2 1 3 34 34 H 1.09006 * 109.46762 * 119.98940 * 2 1 3 35 35 H 1.09000 * 109.47692 * 59.99064 * 3 2 1 36 36 H 1.09012 * 109.46528 * 299.99619 * 3 2 1 37 37 H 1.08006 * 120.77685 * 359.95247 * 6 5 4 38 38 H 1.08000 * 120.28324 * 180.02562 * 7 6 5 39 39 H 1.08003 * 119.46284 * 180.02562 * 8 7 6 40 40 H 0.96996 * 119.99753 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.21078 * 80.58180 * 16 14 13 42 42 H 1.08997 * 109.20792 * 321.26207 * 16 14 13 43 43 H 1.08998 * 110.25063 * 338.70831 * 17 16 14 44 44 H 1.09001 * 110.36989 * 216.71618 * 17 16 14 45 45 H 1.08995 * 108.52238 * 149.35470 * 18 17 16 46 46 H 1.08997 * 108.40305 * 31.74399 * 18 17 16 47 47 H 1.08990 * 109.84758 * 298.90085 * 19 18 17 48 48 H 1.08997 * 109.89745 * 177.94930 * 19 18 17 49 49 H 0.96996 * 120.00447 * 179.97438 * 24 23 21 50 50 H 1.08991 * 108.16323 * 213.03339 * 29 20 19 51 51 H 1.09001 * 108.15805 * 329.60206 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0848 2.6511 -0.0012 6 6 3.3371 3.8268 -0.0007 7 6 4.0097 5.0352 -0.0008 8 6 5.3973 5.0435 -0.0009 9 7 6.0820 3.9223 0.0047 10 6 5.4810 2.7375 -0.0007 11 6 6.2931 1.5022 -0.0006 12 8 5.7474 0.4160 -0.0006 13 7 7.6387 1.5803 -0.0006 14 6 8.4435 0.3562 -0.0011 15 1 7.9395 -0.4054 0.5939 16 6 9.8318 0.6544 0.6164 17 6 10.8374 -0.3759 0.1908 18 6 11.5890 0.2503 -0.9795 19 6 10.9885 -0.0090 -2.2875 20 7 9.5851 0.5242 -2.2547 21 6 9.2470 1.6381 -2.9758 22 1 8.2187 1.8054 -3.2607 23 6 10.2257 2.5523 -3.3405 24 7 11.3737 2.5793 -2.6971 25 14 9.9138 3.7443 -4.7445 26 1 10.4475 3.1728 -6.0069 27 1 10.5927 5.0339 -4.4590 28 1 8.4534 3.9740 -4.8836 29 6 8.6058 -0.1488 -1.4512 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 2.2575 3.7952 -0.0006 38 1 3.4596 5.9647 0.0000 39 1 5.9229 5.9870 -0.0006 40 1 8.0741 2.4470 -0.0011 41 1 9.7498 0.6480 1.7032 42 1 10.1661 1.6386 0.2884 43 1 10.3318 -1.2868 -0.1296 44 1 11.5255 -0.5945 1.0074 45 1 12.6079 -0.1366 -0.9835 46 1 11.6298 1.3285 -0.8248 47 1 10.9725 -1.0815 -2.4812 48 1 11.5592 0.4988 -3.0649 49 1 12.0578 3.2178 -2.9522 50 1 7.6395 -0.0589 -1.9472 51 1 8.8656 -1.2067 -1.4144 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034379933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:30 Heat of formation + Delta-G solvation = -31.247451 kcal Electronic energy + Delta-G solvation = -32008.699363 eV Core-core repulsion = 27908.497592 eV Total energy + Delta-G solvation = -4100.201771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.93955 -40.48538 -39.38711 -39.02713 -35.81125 -34.94314 -34.71319 -33.47214 -32.82484 -31.79585 -31.06626 -27.99210 -27.61923 -26.30369 -25.20921 -24.64816 -23.91921 -22.58975 -21.90120 -21.15254 -20.71159 -19.34461 -18.68792 -18.52091 -18.00222 -17.40706 -16.94786 -16.69022 -16.45451 -16.16627 -15.81405 -15.59645 -15.47370 -15.20881 -14.97518 -14.78074 -14.58415 -14.13339 -14.01299 -13.78642 -13.59751 -13.41106 -13.23616 -13.18373 -13.03212 -12.96500 -12.65954 -12.53247 -12.35722 -12.31197 -11.94509 -11.89960 -11.80187 -11.63658 -11.30154 -11.15857 -11.10592 -10.91759 -10.82941 -10.52622 -10.43423 -9.93792 -9.47001 -8.57448 -7.78849 -5.18327 -0.32450 0.23597 1.44643 1.47740 1.54826 1.84931 2.05119 2.32361 2.55157 2.87602 3.29167 3.33751 3.59530 3.62596 3.71040 3.90406 3.94373 3.96375 4.04232 4.16362 4.18459 4.24549 4.43266 4.48975 4.50524 4.52404 4.54015 4.63502 4.69906 4.76034 4.84887 4.89503 4.94147 4.98530 5.07075 5.12146 5.15582 5.21547 5.30729 5.32812 5.36290 5.46225 5.47475 5.61515 5.70250 5.78095 5.81796 6.24916 6.25609 6.44665 6.61905 6.90200 7.22535 7.35671 7.93658 8.43636 9.24606 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.003526 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.846960 B = 7939.871340 C = 9030.476135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.042 3.958 4 O -0.304 6.304 5 C 0.125 3.875 6 C -0.172 4.172 7 C -0.087 4.087 8 C 0.047 3.953 9 N -0.445 5.445 10 C 0.005 3.995 11 C 0.559 3.441 12 O -0.565 6.565 13 N -0.685 5.685 14 C 0.123 3.877 15 H 0.075 0.925 16 C -0.099 4.099 17 C -0.103 4.103 18 C -0.122 4.122 19 C 0.167 3.833 20 N -0.592 5.592 21 C -0.244 4.244 22 H 0.040 0.960 23 C -0.031 4.031 24 N -0.908 5.908 25 Si 0.948 3.052 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.286 1.286 29 C 0.157 3.843 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.181 0.819 38 H 0.192 0.808 39 H 0.190 0.810 40 H 0.406 0.594 41 H 0.062 0.938 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.038 0.962 46 H 0.070 0.930 47 H 0.020 0.980 48 H 0.059 0.941 49 H 0.248 0.752 50 H 0.005 0.995 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.882 2.969 9.328 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C -0.032 4.032 4 O -0.215 6.215 5 C 0.073 3.927 6 C -0.198 4.198 7 C -0.107 4.107 8 C -0.115 4.115 9 N -0.157 5.157 10 C -0.132 4.132 11 C 0.345 3.655 12 O -0.445 6.445 13 N -0.333 5.333 14 C 0.016 3.984 15 H 0.093 0.907 16 C -0.137 4.137 17 C -0.141 4.141 18 C -0.161 4.161 19 C 0.044 3.956 20 N -0.313 5.313 21 C -0.375 4.375 22 H 0.058 0.942 23 C -0.228 4.228 24 N -0.554 5.554 25 Si 0.779 3.221 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.212 1.212 29 C 0.027 3.973 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.198 0.802 38 H 0.209 0.791 39 H 0.207 0.793 40 H 0.241 0.759 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.038 0.962 48 H 0.077 0.923 49 H 0.057 0.943 50 H 0.024 0.976 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.119 2.023 9.280 19.577 hybrid contribution -0.574 1.175 -1.005 1.649 sum -17.693 3.198 8.275 19.792 Atomic orbital electron populations 1.21654 0.91806 1.03246 1.03062 1.21482 0.97675 0.94193 1.02780 1.23328 0.76799 1.00155 1.02930 1.86388 1.23057 1.25573 1.86455 1.20201 0.91851 0.86909 0.93691 1.22153 1.02474 0.90645 1.04507 1.22705 0.94878 0.99807 0.93278 1.23379 0.92969 0.96245 0.98920 1.67582 1.41295 0.98045 1.08775 1.20579 0.89578 0.92655 1.10339 1.18071 0.82693 0.87899 0.76847 1.90724 1.72390 1.28906 1.52433 1.45854 1.05122 1.10666 1.71691 1.22581 0.91011 0.86130 0.98724 0.90729 1.21551 0.93283 1.00031 0.98805 1.20945 0.97428 0.97546 0.98169 1.20824 0.97255 1.02443 0.95557 1.20128 0.84506 0.93349 0.97568 1.44314 1.07251 1.29944 1.49825 1.19041 0.93168 0.99079 1.26188 0.94199 1.25317 0.97567 0.98549 1.01369 1.70101 1.07190 1.38071 1.39994 0.85552 0.76883 0.78898 0.80790 1.21810 1.21704 1.21167 1.20644 0.91620 0.94922 0.90077 0.91145 0.91513 0.91254 0.92438 0.91889 0.89718 0.90372 0.80184 0.79125 0.79287 0.75889 0.91909 0.92955 0.91879 0.90264 0.94297 0.91118 0.96181 0.92258 0.94269 0.97641 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.91 71.98 0.71 -0.93 16 2 C -0.12 -2.35 6.30 30.59 0.19 -2.16 16 3 C 0.04 0.83 4.76 71.98 0.34 1.17 16 4 O -0.30 -9.66 8.20 -68.66 -0.56 -10.22 16 5 C 0.12 3.82 6.71 22.94 0.15 3.98 16 6 C -0.17 -3.38 9.13 22.55 0.21 -3.18 16 7 C -0.09 -1.45 10.10 22.41 0.23 -1.22 16 8 C 0.05 1.10 11.17 84.89 0.95 2.05 16 9 N -0.45 -15.10 9.54 -184.63 -1.76 -16.86 16 10 C 0.01 0.19 6.76 41.93 0.28 0.48 16 11 C 0.56 24.32 7.61 86.78 0.66 24.98 16 12 O -0.56 -26.90 14.80 17.07 0.25 -26.64 16 13 N -0.69 -29.35 5.07 -440.17 -2.23 -31.58 16 14 C 0.12 5.10 2.91 46.10 0.13 5.24 16 15 H 0.07 3.05 7.57 -2.39 -0.02 3.03 16 16 C -0.10 -3.74 5.23 30.30 0.16 -3.58 16 17 C -0.10 -3.65 5.76 29.51 0.17 -3.48 16 18 C -0.12 -5.15 5.02 28.36 0.14 -5.01 16 19 C 0.17 7.91 5.25 83.58 0.44 8.35 16 20 N -0.59 -29.99 2.61 -708.86 -1.85 -31.84 16 21 C -0.24 -13.69 9.62 84.03 0.81 -12.88 16 22 H 0.04 2.39 7.89 -2.91 -0.02 2.37 16 23 C -0.03 -1.73 4.91 84.86 0.42 -1.31 16 24 N -0.91 -50.29 9.43 21.65 0.20 -50.08 16 25 Si 0.95 45.73 29.60 68.60 2.03 47.76 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 C 0.16 7.26 4.75 87.42 0.41 7.68 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.22 7.70 -2.39 -0.02 1.20 16 36 H 0.08 1.23 7.70 -2.38 -0.02 1.22 16 37 H 0.18 2.06 6.46 -2.91 -0.02 2.04 16 38 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.41 17.81 7.77 -92.71 -0.72 17.09 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.05 2.32 6.58 -2.39 -0.02 2.30 16 43 H 0.06 2.18 6.28 -2.39 -0.02 2.16 16 44 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 3.48 5.28 -2.39 -0.01 3.46 16 47 H 0.02 0.88 8.13 -2.39 -0.02 0.86 16 48 H 0.06 3.15 6.06 -2.39 -0.01 3.13 16 49 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 50 H 0.01 0.27 7.80 -2.39 -0.02 0.26 16 51 H 0.05 2.10 6.89 -2.39 -0.02 2.08 16 Total: -1.00 -72.77 398.15 2.71 -70.06 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.22 Total: 29.24 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 6.41 Total: 20.18 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -5.64 Total: -130.37 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.31 Total: -36.87 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.77 2.71 -70.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034379933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -72.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds