Wall clock time and date at job start Wed Apr 1 2020 05:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47476 * 2 1 4 4 O 1.42905 * 109.47193 * 120.00719 * 2 1 3 5 5 C 1.35718 * 117.00169 * 155.59063 * 4 2 1 6 6 C 1.39233 * 120.38297 * 5.32082 * 5 4 2 7 7 C 1.38318 * 118.44417 * 179.75683 * 6 5 4 8 8 C 1.39478 * 119.13315 * 0.55553 * 7 6 5 9 9 C 1.47925 * 119.65728 * 179.71307 * 8 7 6 10 10 O 1.21543 * 120.00053 * 359.72403 * 9 8 7 11 11 N 1.34774 * 119.99557 * 179.72824 * 9 8 7 12 12 C 1.46505 * 119.99695 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.24838 * 324.65729 * 12 11 9 14 14 C 1.54840 * 109.36011 * 204.99579 * 12 11 9 15 15 C 1.50120 * 110.82176 * 200.92705 * 14 12 11 16 16 C 1.52524 * 105.41289 * 97.68258 * 15 14 12 17 17 C 1.46238 * 114.28087 * 270.59529 * 16 15 14 18 18 N 1.50169 * 107.53097 * 58.41039 * 17 16 15 19 19 C 1.36930 * 120.53721 * 109.56438 * 18 17 16 20 20 H 1.08006 * 119.99910 * 155.24999 * 19 18 17 21 21 C 1.38813 * 120.00322 * 335.25392 * 19 18 17 22 22 N 1.31615 * 119.99350 * 335.26876 * 21 19 18 23 23 Si 1.86803 * 120.00249 * 155.27047 * 21 19 18 24 24 H 1.48501 * 109.46959 * 265.01792 * 23 21 19 25 25 H 1.48499 * 109.46672 * 145.01826 * 23 21 19 26 26 H 1.48497 * 109.47215 * 25.01789 * 23 21 19 27 27 C 1.43441 * 118.92462 * 289.84097 * 18 17 16 28 28 N 1.32794 * 120.68053 * 359.43251 * 8 7 6 29 29 C 1.31382 * 121.69681 * 0.27346 * 28 8 7 30 30 H 1.08997 * 109.46699 * 299.99957 * 1 2 3 31 31 H 1.09001 * 109.46820 * 59.99833 * 1 2 3 32 32 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47121 * 239.99851 * 2 1 3 34 34 H 1.09001 * 109.47552 * 300.00625 * 3 2 1 35 35 H 1.09002 * 109.47068 * 59.99818 * 3 2 1 36 36 H 1.09001 * 109.47401 * 180.02562 * 3 2 1 37 37 H 1.07997 * 120.77272 * 0.04669 * 6 5 4 38 38 H 1.07996 * 120.43844 * 180.26148 * 7 6 5 39 39 H 0.97001 * 120.00548 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.20308 * 80.58015 * 14 12 11 41 41 H 1.08999 * 109.21222 * 321.27808 * 14 12 11 42 42 H 1.09001 * 110.24482 * 338.71376 * 15 14 12 43 43 H 1.08997 * 110.37565 * 216.72621 * 15 14 12 44 44 H 1.09009 * 108.51903 * 149.35504 * 16 15 14 45 45 H 1.09001 * 108.40400 * 31.75080 * 16 15 14 46 46 H 1.08999 * 109.84602 * 298.90790 * 17 16 15 47 47 H 1.08994 * 109.90226 * 177.94698 * 17 16 15 48 48 H 0.97000 * 119.99793 * 179.97438 * 22 21 19 49 49 H 1.09000 * 108.15885 * 213.02844 * 27 18 17 50 50 H 1.08998 * 108.15629 * 329.60006 * 27 18 17 51 51 H 1.08002 * 119.59426 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2499 -1.2135 1.1020 6 6 4.0496 -1.0075 -0.0190 7 6 5.3122 -1.5719 -0.0404 8 6 5.7343 -2.3330 1.0495 9 6 7.0799 -2.9473 1.0361 10 8 7.8094 -2.7917 0.0766 11 7 7.4968 -3.6795 2.0880 12 6 8.8293 -4.2883 2.0746 13 1 9.0706 -4.6023 1.0591 14 6 8.8391 -5.5226 3.0095 15 6 10.2402 -5.8664 3.4246 16 6 10.4221 -5.2339 4.8006 17 6 10.9251 -3.8611 4.7696 18 7 9.9539 -3.0415 3.9695 19 6 9.1577 -2.1115 4.5828 20 1 8.7729 -1.2742 4.0194 21 6 8.8450 -2.2448 5.9287 22 7 8.8711 -3.4322 6.4958 23 14 8.3872 -0.7389 6.9348 24 1 9.5936 -0.2227 7.6301 25 1 7.3575 -1.1089 7.9388 26 1 7.8467 0.3118 6.0354 27 6 9.8697 -3.2527 2.5533 28 7 4.9427 -2.5073 2.1014 29 6 3.7406 -1.9801 2.1557 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 3.6940 -0.4169 -0.8504 38 1 5.9609 -1.4292 -0.8919 39 1 6.9147 -3.8034 2.8540 40 1 8.4014 -6.3725 2.4858 41 1 8.2453 -5.3048 3.8972 42 1 10.9566 -5.4462 2.7186 43 1 10.3630 -6.9476 3.4871 44 1 11.1196 -5.8454 5.3732 45 1 9.4592 -5.2385 5.3114 46 1 11.9069 -3.8372 4.2968 47 1 10.9933 -3.4680 5.7839 48 1 8.6529 -3.5254 7.4363 49 1 9.6346 -2.2989 2.0809 50 1 10.8505 -3.5689 2.1981 51 1 3.1251 -2.1440 3.0279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034556264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:44 Heat of formation + Delta-G solvation = -13.576309 kcal Electronic energy + Delta-G solvation = -31520.995703 eV Core-core repulsion = 27421.560210 eV Total energy + Delta-G solvation = -4099.435493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.94049 -39.48598 -38.37794 -37.37211 -34.15948 -33.68813 -33.06723 -32.30447 -31.02815 -30.60848 -29.44668 -27.72439 -26.10129 -24.89787 -24.09924 -23.42316 -22.78853 -21.72165 -20.41180 -19.62495 -19.03539 -18.62136 -17.54207 -16.89144 -16.55645 -15.87956 -15.43247 -15.16677 -15.04420 -14.67168 -14.65882 -14.27582 -14.24809 -13.82209 -13.63177 -13.43940 -13.26988 -13.09160 -12.76559 -12.67708 -12.45843 -12.29232 -12.21131 -12.10819 -11.70677 -11.50485 -11.36101 -11.28001 -11.15484 -10.74560 -10.71197 -10.41030 -10.04737 -9.92639 -9.90539 -9.90033 -9.65691 -9.41182 -9.29288 -9.17620 -8.61146 -8.45796 -8.19335 -6.64365 -5.76868 -3.11856 0.78588 1.13159 2.76145 3.06526 3.41501 3.49674 3.51801 3.69143 4.05842 4.29257 4.35800 4.44993 4.49336 4.56043 4.62768 4.74342 5.03095 5.08135 5.11490 5.29571 5.31697 5.34907 5.37060 5.43176 5.55768 5.65163 5.70576 5.71800 5.74563 5.87295 5.92025 6.04213 6.19033 6.21989 6.30084 6.32583 6.50623 6.59099 6.66753 6.93290 6.97361 7.01258 7.01916 7.10367 7.29121 7.30950 7.57404 7.77757 7.81696 8.04576 8.24911 8.47463 8.78891 9.23361 9.91317 10.45732 11.29786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.003076 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.379461 B = 9101.996158 C =10512.804378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.183 4.183 4 O -0.301 6.301 5 C 0.097 3.903 6 C -0.180 4.180 7 C -0.073 4.073 8 C 0.048 3.952 9 C 0.568 3.432 10 O -0.556 6.556 11 N -0.676 5.676 12 C 0.115 3.885 13 H 0.072 0.928 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.136 4.136 17 C 0.168 3.832 18 N -0.581 5.581 19 C -0.244 4.244 20 H 0.063 0.937 21 C 0.009 3.991 22 N -0.892 5.892 23 Si 0.890 3.110 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.281 1.281 27 C 0.151 3.849 28 N -0.410 5.410 29 C 0.077 3.923 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.412 0.588 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.024 0.976 45 H 0.106 0.894 46 H 0.007 0.993 47 H 0.079 0.921 48 H 0.251 0.749 49 H 0.037 0.963 50 H 0.037 0.963 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.160 2.368 -12.518 18.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.240 4.240 4 O -0.213 6.213 5 C 0.049 3.951 6 C -0.206 4.206 7 C -0.094 4.094 8 C -0.090 4.090 9 C 0.352 3.648 10 O -0.435 6.435 11 N -0.324 5.324 12 C 0.008 3.992 13 H 0.090 0.910 14 C -0.149 4.149 15 C -0.148 4.148 16 C -0.175 4.175 17 C 0.044 3.956 18 N -0.301 5.301 19 C -0.373 4.373 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.536 5.536 23 Si 0.721 3.279 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.207 1.207 27 C 0.021 3.979 28 N -0.121 5.121 29 C -0.085 4.085 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.248 0.752 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.124 0.876 46 H 0.026 0.974 47 H 0.097 0.903 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.055 0.945 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.455 1.939 -12.144 17.503 hybrid contribution -0.950 1.327 0.122 1.637 sum -13.405 3.267 -12.022 18.300 Atomic orbital electron populations 1.21853 0.92113 1.03338 1.03232 1.22527 0.95700 0.92774 0.87231 1.22412 1.02402 0.95788 1.03433 1.86115 1.28170 1.67937 1.39077 1.20417 0.85384 0.93776 0.95569 1.21683 0.95343 1.04507 0.99054 1.21931 0.95029 0.93483 0.98920 1.21255 0.95807 1.00378 0.91556 1.17630 0.84629 0.79253 0.83296 1.90725 1.55659 1.61993 1.35165 1.45883 1.17823 1.49482 1.19235 1.22780 0.83176 0.94728 0.98546 0.91005 1.21676 0.98263 0.94972 0.99980 1.20946 0.96335 0.98562 0.98986 1.21061 1.04640 0.96957 0.94801 1.20074 0.88480 0.90217 0.96807 1.44264 1.41342 1.42822 1.01696 1.19098 1.25030 1.00227 0.92957 0.91935 1.24809 0.99663 0.95853 0.98655 1.69997 1.51919 1.20041 1.11672 0.86449 0.77535 0.83647 0.80270 1.21746 1.22003 1.20686 1.20713 0.94620 0.95850 0.86765 1.67679 1.03031 1.17532 1.23901 1.22278 0.92571 0.95881 0.97818 0.91255 0.90403 0.91503 0.90756 0.90806 0.91135 0.91661 0.83861 0.83304 0.75160 0.94294 0.89855 0.92479 0.93249 0.95749 0.87604 0.97441 0.90304 0.93860 0.94461 0.94505 0.81441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.56 37.16 0.36 -0.49 16 2 C 0.07 0.56 2.85 -26.73 -0.08 0.48 16 3 C -0.18 -1.26 9.17 37.15 0.34 -0.92 16 4 O -0.30 -3.22 9.81 -18.86 -0.18 -3.41 16 5 C 0.10 1.19 6.63 -38.84 -0.26 0.93 16 6 C -0.18 -2.06 8.30 -39.18 -0.33 -2.39 16 7 C -0.07 -1.02 9.62 -39.09 -0.38 -1.40 16 8 C 0.05 0.82 6.75 -83.02 -0.56 0.26 16 9 C 0.57 11.04 7.62 -12.29 -0.09 10.95 16 10 O -0.56 -11.74 15.98 5.33 0.09 -11.66 16 11 N -0.68 -13.31 5.07 -53.07 -0.27 -13.58 16 12 C 0.12 2.26 2.91 -66.22 -0.19 2.07 16 13 H 0.07 1.39 7.57 -51.93 -0.39 0.99 16 14 C -0.11 -2.07 5.23 -27.19 -0.14 -2.21 16 15 C -0.11 -1.99 5.76 -28.41 -0.16 -2.15 16 16 C -0.14 -2.84 5.06 -30.19 -0.15 -2.99 16 17 C 0.17 3.83 5.25 -5.20 -0.03 3.81 16 18 N -0.58 -13.99 2.60 -175.40 -0.46 -14.45 16 19 C -0.24 -6.48 9.57 -15.06 -0.14 -6.63 16 20 H 0.06 1.75 7.93 -52.48 -0.42 1.33 16 21 C 0.01 0.24 4.74 -17.43 -0.08 0.16 16 22 N -0.89 -23.95 9.78 55.49 0.54 -23.41 16 23 Si 0.89 21.63 29.62 -169.99 -5.04 16.59 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.15 3.29 4.75 -4.92 -0.02 3.26 16 28 N -0.41 -6.82 9.52 -9.67 -0.09 -6.91 16 29 C 0.08 1.07 11.14 -17.38 -0.19 0.87 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.50 6.37 -51.93 -0.33 0.17 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.51 6.87 -51.93 -0.36 0.16 16 37 H 0.14 1.21 5.55 -52.49 -0.29 0.92 16 38 H 0.15 1.95 7.63 -52.49 -0.40 1.55 16 39 H 0.41 8.34 7.76 -40.82 -0.32 8.02 16 40 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.08 1.79 6.58 -51.93 -0.34 1.45 16 42 H 0.06 1.01 6.28 -51.93 -0.33 0.69 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 45 H 0.11 2.53 5.10 -51.93 -0.26 2.27 16 46 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 47 H 0.08 2.00 6.35 -51.93 -0.33 1.67 16 48 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 49 H 0.04 0.88 7.81 -51.93 -0.41 0.48 16 50 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 51 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -29.57 396.93 -9.44 -39.01 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.89 Total: 8.23 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -2.11 Total: 3.60 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: -0.27 Total: -58.35 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.10 Total: -15.06 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.04 Total: 16.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.57 -9.44 -39.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034556264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.429 kcal (2) G-P(sol) polarization free energy of solvation -29.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds