Wall clock time and date at job start Wed Apr 1 2020 05:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47476 * 2 1 4 4 O 1.42905 * 109.47193 * 120.00719 * 2 1 3 5 5 C 1.35718 * 117.00169 * 155.59063 * 4 2 1 6 6 C 1.39233 * 120.38297 * 5.32082 * 5 4 2 7 7 C 1.38318 * 118.44417 * 179.75683 * 6 5 4 8 8 C 1.39478 * 119.13315 * 0.55553 * 7 6 5 9 9 C 1.47925 * 119.65728 * 179.71307 * 8 7 6 10 10 O 1.21543 * 120.00053 * 359.72403 * 9 8 7 11 11 N 1.34774 * 119.99557 * 179.72824 * 9 8 7 12 12 C 1.46505 * 119.99695 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.24838 * 324.65729 * 12 11 9 14 14 C 1.54840 * 109.36011 * 204.99579 * 12 11 9 15 15 C 1.50120 * 110.82176 * 200.92705 * 14 12 11 16 16 C 1.52524 * 105.41289 * 97.68258 * 15 14 12 17 17 C 1.46238 * 114.28087 * 270.59529 * 16 15 14 18 18 N 1.50169 * 107.53097 * 58.41039 * 17 16 15 19 19 C 1.36930 * 120.53721 * 109.56438 * 18 17 16 20 20 H 1.08006 * 119.99910 * 155.24999 * 19 18 17 21 21 C 1.38813 * 120.00322 * 335.25392 * 19 18 17 22 22 N 1.31615 * 119.99350 * 335.26876 * 21 19 18 23 23 Si 1.86803 * 120.00249 * 155.27047 * 21 19 18 24 24 H 1.48501 * 109.46959 * 265.01792 * 23 21 19 25 25 H 1.48499 * 109.46672 * 145.01826 * 23 21 19 26 26 H 1.48497 * 109.47215 * 25.01789 * 23 21 19 27 27 C 1.43441 * 118.92462 * 289.84097 * 18 17 16 28 28 N 1.32794 * 120.68053 * 359.43251 * 8 7 6 29 29 C 1.31382 * 121.69681 * 0.27346 * 28 8 7 30 30 H 1.08997 * 109.46699 * 299.99957 * 1 2 3 31 31 H 1.09001 * 109.46820 * 59.99833 * 1 2 3 32 32 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47121 * 239.99851 * 2 1 3 34 34 H 1.09001 * 109.47552 * 300.00625 * 3 2 1 35 35 H 1.09002 * 109.47068 * 59.99818 * 3 2 1 36 36 H 1.09001 * 109.47401 * 180.02562 * 3 2 1 37 37 H 1.07997 * 120.77272 * 0.04669 * 6 5 4 38 38 H 1.07996 * 120.43844 * 180.26148 * 7 6 5 39 39 H 0.97001 * 120.00548 * 359.97438 * 11 9 8 40 40 H 1.09007 * 109.20308 * 80.58015 * 14 12 11 41 41 H 1.08999 * 109.21222 * 321.27808 * 14 12 11 42 42 H 1.09001 * 110.24482 * 338.71376 * 15 14 12 43 43 H 1.08997 * 110.37565 * 216.72621 * 15 14 12 44 44 H 1.09009 * 108.51903 * 149.35504 * 16 15 14 45 45 H 1.09001 * 108.40400 * 31.75080 * 16 15 14 46 46 H 1.08999 * 109.84602 * 298.90790 * 17 16 15 47 47 H 1.08994 * 109.90226 * 177.94698 * 17 16 15 48 48 H 0.97000 * 119.99793 * 179.97438 * 22 21 19 49 49 H 1.09000 * 108.15885 * 213.02844 * 27 18 17 50 50 H 1.08998 * 108.15629 * 329.60006 * 27 18 17 51 51 H 1.08002 * 119.59426 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6738 1.1667 5 6 3.2499 -1.2135 1.1020 6 6 4.0496 -1.0075 -0.0190 7 6 5.3122 -1.5719 -0.0404 8 6 5.7343 -2.3330 1.0495 9 6 7.0799 -2.9473 1.0361 10 8 7.8094 -2.7917 0.0766 11 7 7.4968 -3.6795 2.0880 12 6 8.8293 -4.2883 2.0746 13 1 9.0706 -4.6023 1.0591 14 6 8.8391 -5.5226 3.0095 15 6 10.2402 -5.8664 3.4246 16 6 10.4221 -5.2339 4.8006 17 6 10.9251 -3.8611 4.7696 18 7 9.9539 -3.0415 3.9695 19 6 9.1577 -2.1115 4.5828 20 1 8.7729 -1.2742 4.0194 21 6 8.8450 -2.2448 5.9287 22 7 8.8711 -3.4322 6.4958 23 14 8.3872 -0.7389 6.9348 24 1 9.5936 -0.2227 7.6301 25 1 7.3575 -1.1089 7.9388 26 1 7.8467 0.3118 6.0354 27 6 9.8697 -3.2527 2.5533 28 7 4.9427 -2.5073 2.1014 29 6 3.7406 -1.9801 2.1557 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 3.6940 -0.4169 -0.8504 38 1 5.9609 -1.4292 -0.8919 39 1 6.9147 -3.8034 2.8540 40 1 8.4014 -6.3725 2.4858 41 1 8.2453 -5.3048 3.8972 42 1 10.9566 -5.4462 2.7186 43 1 10.3630 -6.9476 3.4871 44 1 11.1196 -5.8454 5.3732 45 1 9.4592 -5.2385 5.3114 46 1 11.9069 -3.8372 4.2968 47 1 10.9933 -3.4680 5.7839 48 1 8.6529 -3.5254 7.4363 49 1 9.6346 -2.2989 2.0809 50 1 10.8505 -3.5689 2.1981 51 1 3.1251 -2.1440 3.0279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034556264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:43 Heat of formation + Delta-G solvation = -30.973327 kcal Electronic energy + Delta-G solvation = -31521.750095 eV Core-core repulsion = 27421.560210 eV Total energy + Delta-G solvation = -4100.189884 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.99206 -40.81166 -39.64508 -38.87604 -35.85000 -34.78654 -34.33983 -33.40958 -32.87841 -32.01546 -30.84675 -28.22116 -27.94395 -26.25565 -25.35866 -24.86416 -24.35418 -22.65834 -21.80702 -21.10368 -20.71722 -19.53088 -18.79658 -18.52925 -18.02102 -16.95912 -16.75049 -16.65870 -16.43475 -16.18349 -15.76025 -15.65078 -15.56485 -15.20273 -15.06650 -14.88307 -14.33902 -14.15953 -14.01051 -13.77213 -13.49146 -13.40699 -13.39032 -13.28916 -13.17815 -13.13255 -12.84104 -12.66770 -12.36795 -12.31636 -12.00856 -11.91010 -11.80569 -11.76342 -11.31213 -11.22391 -11.07613 -10.95036 -10.90570 -10.61873 -10.45043 -9.98734 -9.50777 -8.58319 -7.81125 -5.17772 -0.35613 0.09844 1.43850 1.48245 1.54367 1.73364 1.95307 2.30608 2.55073 2.81081 3.20386 3.30248 3.48463 3.62430 3.68876 3.77534 3.90802 3.96718 4.00338 4.00875 4.12992 4.18916 4.45653 4.55510 4.58952 4.63274 4.67488 4.68602 4.74050 4.77777 4.85061 4.86029 4.87981 4.88800 4.93481 5.07797 5.21293 5.23304 5.25117 5.28427 5.31497 5.35201 5.47652 5.61874 5.71243 5.75108 5.78950 6.15024 6.24440 6.43965 6.54963 6.81798 7.21675 7.26540 7.93574 8.44786 9.21816 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.003076 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.379461 B = 9101.996158 C =10512.804378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.062 3.938 3 C -0.182 4.182 4 O -0.307 6.307 5 C 0.114 3.886 6 C -0.168 4.168 7 C -0.069 4.069 8 C 0.013 3.987 9 C 0.564 3.436 10 O -0.580 6.580 11 N -0.681 5.681 12 C 0.121 3.879 13 H 0.080 0.920 14 C -0.100 4.100 15 C -0.102 4.102 16 C -0.129 4.129 17 C 0.170 3.830 18 N -0.590 5.590 19 C -0.249 4.249 20 H 0.041 0.959 21 C -0.024 4.024 22 N -0.900 5.900 23 Si 0.939 3.061 24 H -0.290 1.290 25 H -0.293 1.293 26 H -0.286 1.286 27 C 0.154 3.846 28 N -0.436 5.436 29 C 0.062 3.938 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.180 0.820 38 H 0.156 0.844 39 H 0.407 0.593 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.048 0.952 48 H 0.248 0.752 49 H 0.010 0.990 50 H 0.052 0.948 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 2.530 -14.108 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.007 3.993 3 C -0.239 4.239 4 O -0.219 6.219 5 C 0.064 3.936 6 C -0.193 4.193 7 C -0.090 4.090 8 C -0.123 4.123 9 C 0.351 3.649 10 O -0.461 6.461 11 N -0.328 5.328 12 C 0.013 3.987 13 H 0.098 0.902 14 C -0.138 4.138 15 C -0.139 4.139 16 C -0.168 4.168 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.380 4.380 20 H 0.059 0.941 21 C -0.222 4.222 22 N -0.545 5.545 23 Si 0.770 3.230 24 H -0.217 1.217 25 H -0.220 1.220 26 H -0.212 1.212 27 C 0.024 3.976 28 N -0.147 5.147 29 C -0.100 4.100 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.197 0.803 38 H 0.174 0.826 39 H 0.243 0.757 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.028 0.972 50 H 0.070 0.930 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -13.777 2.100 -13.750 19.577 hybrid contribution -0.671 1.381 0.567 1.637 sum -14.448 3.481 -13.183 19.866 Atomic orbital electron populations 1.21891 0.90611 1.03557 1.04237 1.22924 0.96893 0.92968 0.86493 1.22426 1.01709 0.95430 1.04380 1.86141 1.27061 1.67640 1.41019 1.20378 0.85944 0.92339 0.94921 1.21972 0.93956 1.03708 0.99713 1.22042 0.96095 0.92792 0.98095 1.21005 0.95184 1.02835 0.93304 1.18061 0.85598 0.78612 0.82664 1.90684 1.56729 1.62860 1.35822 1.45912 1.17723 1.49892 1.19294 1.22646 0.82652 0.94366 0.98988 0.90215 1.21562 0.98560 0.95178 0.98548 1.20917 0.95817 1.00143 0.97056 1.20885 1.03068 0.96177 0.96630 1.20048 0.89078 0.91002 0.95150 1.44311 1.41359 1.42993 1.02497 1.18989 1.25419 1.00323 0.93251 0.94117 1.25253 1.00228 0.97537 0.99189 1.70115 1.52346 1.20680 1.11351 0.85694 0.77036 0.81362 0.78916 1.21728 1.22016 1.21163 1.20694 0.96131 0.95327 0.85410 1.67555 1.04166 1.18693 1.24322 1.22552 0.92047 0.96331 0.99104 0.91670 0.88000 0.91697 0.89303 0.88337 0.91823 0.92680 0.80321 0.82635 0.75701 0.91884 0.92932 0.91696 0.90349 0.94359 0.90683 0.95678 0.93326 0.94270 0.97200 0.92971 0.80082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.56 71.98 0.69 -0.56 16 2 C 0.06 0.76 2.85 30.59 0.09 0.84 16 3 C -0.18 -1.99 9.17 71.98 0.66 -1.33 16 4 O -0.31 -5.93 9.81 -90.40 -0.89 -6.81 16 5 C 0.11 2.60 6.63 22.75 0.15 2.76 16 6 C -0.17 -3.52 8.30 22.53 0.19 -3.33 16 7 C -0.07 -1.90 9.62 22.59 0.22 -1.68 16 8 C 0.01 0.46 6.75 41.87 0.28 0.75 16 9 C 0.56 22.63 7.62 86.81 0.66 23.29 16 10 O -0.58 -25.01 15.98 -3.85 -0.06 -25.07 16 11 N -0.68 -27.65 5.07 -440.09 -2.23 -29.88 16 12 C 0.12 4.75 2.91 46.10 0.13 4.88 16 13 H 0.08 3.03 7.57 -2.39 -0.02 3.01 16 14 C -0.10 -3.66 5.23 30.29 0.16 -3.51 16 15 C -0.10 -3.46 5.76 29.51 0.17 -3.29 16 16 C -0.13 -5.29 5.06 28.35 0.14 -5.15 16 17 C 0.17 7.80 5.25 83.58 0.44 8.24 16 18 N -0.59 -28.97 2.60 -708.84 -1.84 -30.82 16 19 C -0.25 -13.69 9.57 84.03 0.80 -12.89 16 20 H 0.04 2.39 7.93 -2.91 -0.02 2.36 16 21 C -0.02 -1.33 4.74 84.86 0.40 -0.93 16 22 N -0.90 -49.38 9.78 21.65 0.21 -49.17 16 23 Si 0.94 45.39 29.62 68.60 2.03 47.42 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 C 0.15 6.79 4.75 87.42 0.41 7.20 16 28 N -0.44 -14.84 9.52 -184.52 -1.76 -16.60 16 29 C 0.06 1.72 11.14 85.00 0.95 2.67 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.09 0.85 6.37 -2.39 -0.02 0.83 16 34 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.72 6.87 -2.39 -0.02 0.71 16 37 H 0.18 2.38 5.55 -2.91 -0.02 2.37 16 38 H 0.16 3.98 7.63 -2.91 -0.02 3.95 16 39 H 0.41 17.25 7.76 -92.71 -0.72 16.53 16 40 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.05 2.28 6.58 -2.39 -0.02 2.26 16 42 H 0.06 2.13 6.28 -2.39 -0.01 2.12 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.07 3.62 5.10 -2.39 -0.01 3.61 16 46 H 0.03 1.05 8.13 -2.39 -0.02 1.03 16 47 H 0.05 2.51 6.35 -2.39 -0.02 2.49 16 48 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 49 H 0.01 0.48 7.81 -2.39 -0.02 0.46 16 50 H 0.05 2.11 6.89 -2.39 -0.02 2.09 16 51 H 0.18 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -65.79 396.93 2.24 -63.56 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: 0.23 Total: 29.40 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.55 Total: 17.97 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.62 Total: -126.46 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.95 Total: -31.88 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -65.79 2.24 -63.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034556264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.582 kcal (2) G-P(sol) polarization free energy of solvation -65.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds