Wall clock time and date at job start Wed Apr 1 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 O 1.42901 * 109.47483 * 120.00060 * 2 1 3 5 5 C 1.35430 * 117.00082 * 149.99520 * 4 2 1 6 6 N 1.32238 * 119.80258 * 0.31721 * 5 4 2 7 7 C 1.31873 * 121.79949 * 180.30898 * 6 5 4 8 8 C 1.38358 * 121.18892 * 359.66298 * 7 6 5 9 9 C 1.38340 * 119.45475 * 0.02562 * 8 7 6 10 10 C 1.39989 * 118.34982 * 0.02562 * 9 8 7 11 11 C 1.47524 * 120.59533 * 180.02562 * 10 9 8 12 12 O 1.21584 * 119.99827 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99807 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99533 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.24980 * 324.66454 * 14 13 11 16 16 C 1.54835 * 109.35807 * 205.00102 * 14 13 11 17 17 C 1.50128 * 110.81811 * 200.93353 * 16 14 13 18 18 C 1.52527 * 105.41730 * 97.68195 * 17 16 14 19 19 C 1.46233 * 114.27683 * 270.59489 * 18 17 16 20 20 N 1.50169 * 107.53454 * 58.41004 * 19 18 17 21 21 C 1.36935 * 120.53539 * 109.56326 * 20 19 18 22 22 H 1.08002 * 119.99553 * 172.85164 * 21 20 19 23 23 C 1.38807 * 120.00159 * 352.84540 * 21 20 19 24 24 N 1.31610 * 120.00327 * 319.29761 * 23 21 20 25 25 Si 1.86800 * 119.99582 * 139.29640 * 23 21 20 26 26 H 1.48502 * 109.46986 * 269.99971 * 25 23 21 27 27 H 1.48503 * 109.47198 * 150.00496 * 25 23 21 28 28 H 1.48497 * 109.47483 * 30.00436 * 25 23 21 29 29 C 1.43437 * 118.92249 * 289.84046 * 20 19 18 30 30 H 1.09001 * 109.46968 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.47433 * 59.99821 * 1 2 3 32 32 H 1.09002 * 109.47531 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47121 * 239.99691 * 2 1 3 34 34 H 1.09011 * 109.47317 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47041 * 299.99936 * 3 2 1 36 36 H 1.08993 * 109.47206 * 60.00240 * 3 2 1 37 37 H 1.08001 * 119.40896 * 179.67491 * 7 6 5 38 38 H 1.08000 * 120.27277 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.82028 * 180.02562 * 9 8 7 40 40 H 0.97001 * 120.00245 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.21128 * 80.58938 * 16 14 13 42 42 H 1.09001 * 109.21368 * 321.27658 * 16 14 13 43 43 H 1.09011 * 110.24702 * 338.70901 * 17 16 14 44 44 H 1.08997 * 110.37073 * 216.72389 * 17 16 14 45 45 H 1.09000 * 108.52001 * 149.35402 * 18 17 16 46 46 H 1.08999 * 108.39746 * 31.75132 * 18 17 16 47 47 H 1.08997 * 109.85047 * 298.89701 * 19 18 17 48 48 H 1.08998 * 109.89795 * 177.94741 * 19 18 17 49 49 H 0.97004 * 120.00139 * 353.65886 * 24 23 21 50 50 H 1.08998 * 108.15268 * 213.02776 * 29 20 19 51 51 H 1.08993 * 108.15747 * 329.59428 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1965 -1.3119 1.0653 6 7 3.8616 -1.2848 -0.0773 7 6 5.0204 -1.8974 -0.2216 8 6 5.5979 -2.5939 0.8252 9 6 4.9484 -2.6498 2.0454 10 6 3.7190 -1.9929 2.1748 11 6 2.9843 -2.0199 3.4538 12 8 1.9171 -1.4460 3.5540 13 7 3.4955 -2.6816 4.5108 14 6 2.7661 -2.7079 5.7810 15 1 2.2610 -1.7529 5.9252 16 6 3.7643 -2.9411 6.9414 17 6 3.0575 -3.4724 8.1547 18 6 3.2611 -4.9834 8.1133 19 6 2.2284 -5.7093 7.3751 20 7 2.2113 -5.1708 5.9734 21 6 2.6633 -5.9333 4.9296 22 1 2.5414 -5.5855 3.9144 23 6 3.2782 -7.1530 5.1763 24 7 4.1213 -7.2739 6.1797 25 14 2.9091 -8.6228 4.0841 26 1 1.7546 -9.3742 4.6390 27 1 4.0981 -9.5109 4.0308 28 1 2.5812 -8.1519 2.7145 29 6 1.7195 -3.8426 5.7464 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 5.5280 -1.8545 -1.1739 38 1 6.5477 -3.0899 0.6908 39 1 5.3793 -3.1869 2.8774 40 1 4.3468 -3.1398 4.4307 41 1 4.2486 -1.9975 7.1930 42 1 4.5214 -3.6585 6.6246 43 1 1.9950 -3.2334 8.1071 44 1 3.4966 -3.0572 9.0618 45 1 3.2832 -5.3579 9.1367 46 1 4.2264 -5.1879 7.6501 47 1 1.2575 -5.5507 7.8443 48 1 2.4623 -6.7738 7.3597 49 1 4.3837 -6.4916 6.6897 50 1 1.2354 -3.8220 4.7700 51 1 0.9618 -3.6277 6.4998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034567156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:04 Heat of formation + Delta-G solvation = -5.610126 kcal Electronic energy + Delta-G solvation = -32308.231616 eV Core-core repulsion = 28209.141563 eV Total energy + Delta-G solvation = -4099.090053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.88104 -39.22870 -38.22730 -37.72544 -34.43857 -33.39984 -33.24089 -32.66811 -31.09224 -30.44104 -29.63433 -27.34151 -26.12408 -24.81554 -24.15079 -23.53107 -22.64543 -21.30680 -20.64625 -19.96336 -19.30833 -18.50557 -17.29624 -17.10893 -16.82809 -15.78643 -15.52677 -15.14932 -15.10286 -14.63868 -14.51908 -14.31446 -14.16375 -13.75331 -13.63977 -13.42204 -13.15449 -13.03483 -12.67220 -12.47003 -12.37938 -12.34620 -12.34023 -12.11013 -12.00188 -11.80968 -11.05216 -10.99554 -10.83895 -10.82067 -10.56287 -10.38850 -10.16254 -10.06108 -9.94224 -9.92534 -9.81198 -9.73018 -9.46253 -9.26489 -8.69026 -8.47042 -8.12407 -6.94994 -6.16996 -3.01726 0.73010 1.22916 2.99707 3.18002 3.52754 3.56905 3.58598 3.71982 3.96183 4.19767 4.60943 4.71058 4.81930 4.84452 4.91372 4.97059 5.11557 5.15178 5.16037 5.21624 5.31783 5.41768 5.45160 5.46301 5.65752 5.68771 5.71097 5.73031 5.82483 5.96049 5.99824 6.01541 6.05043 6.06882 6.10546 6.26057 6.32833 6.36663 6.40191 6.60417 6.69827 6.70520 6.87233 6.93490 7.13321 7.23891 7.25568 7.30930 7.71255 7.98885 8.06566 8.53349 8.72385 9.08345 9.86062 10.30948 11.13372 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.003586 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.732744 B = 7806.414698 C = 8727.450215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.075 3.925 3 C -0.166 4.166 4 O -0.262 6.262 5 C 0.372 3.628 6 N -0.549 5.549 7 C 0.159 3.841 8 C -0.221 4.221 9 C -0.005 4.005 10 C -0.202 4.202 11 C 0.560 3.440 12 O -0.529 6.529 13 N -0.701 5.701 14 C 0.117 3.883 15 H 0.075 0.925 16 C -0.111 4.111 17 C -0.110 4.110 18 C -0.135 4.135 19 C 0.129 3.871 20 N -0.587 5.587 21 C -0.349 4.349 22 H 0.063 0.937 23 C -0.016 4.016 24 N -0.903 5.903 25 Si 1.036 2.964 26 H -0.295 1.295 27 H -0.294 1.294 28 H -0.294 1.294 29 C 0.153 3.847 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.161 0.839 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.396 0.604 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.023 0.977 48 H 0.095 0.905 49 H 0.273 0.727 50 H 0.042 0.958 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.130 13.328 -8.214 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 C -0.224 4.224 4 O -0.167 6.167 5 C 0.192 3.808 6 N -0.273 5.273 7 C 0.002 3.998 8 C -0.242 4.242 9 C -0.031 4.031 10 C -0.208 4.208 11 C 0.346 3.654 12 O -0.406 6.406 13 N -0.351 5.351 14 C 0.010 3.990 15 H 0.094 0.906 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.174 4.174 19 C 0.005 3.995 20 N -0.308 5.308 21 C -0.477 4.477 22 H 0.081 0.919 23 C -0.218 4.218 24 N -0.545 5.545 25 Si 0.867 3.133 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.221 1.221 29 C 0.023 3.977 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.179 0.821 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.230 0.770 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.042 0.958 48 H 0.113 0.887 49 H 0.086 0.914 50 H 0.060 0.940 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.036 12.585 -8.825 15.406 hybrid contribution 0.790 0.937 0.495 1.322 sum 1.826 13.522 -8.330 15.987 Atomic orbital electron populations 1.21870 0.92802 1.03201 1.02743 1.22399 0.94823 0.92727 0.88169 1.22202 1.01836 0.95821 1.02499 1.86614 1.30215 1.62680 1.37148 1.19807 0.85590 0.87260 0.88169 1.67378 1.10924 1.25003 1.24036 1.22580 0.89147 0.89410 0.98651 1.21911 1.03229 1.04966 0.94057 1.21733 0.91351 0.91938 0.98098 1.20179 0.98425 1.06899 0.95342 1.17664 0.85286 0.79474 0.82997 1.90782 1.21283 1.45238 1.83339 1.45868 1.24770 1.52928 1.11563 1.22753 0.94342 1.00601 0.81347 0.90649 1.21665 0.98385 1.00091 0.94818 1.20941 1.00615 0.96891 0.96360 1.21091 1.02633 0.94336 0.99338 1.20595 0.94875 1.00251 0.83791 1.44378 1.73477 1.09547 1.03419 1.19926 1.38307 1.02285 0.87148 0.91885 1.25346 0.95387 0.99837 1.01209 1.70837 1.25264 1.34884 1.23556 0.83947 0.76369 0.77432 0.75570 1.22238 1.22067 1.22087 1.20621 0.93214 0.84588 0.99311 0.91403 0.90793 0.91733 0.89530 0.92226 0.91279 0.91876 0.82142 0.84001 0.83692 0.76968 0.93667 0.91069 0.91729 0.92651 0.94225 0.91063 0.95832 0.88746 0.91384 0.93997 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.56 37.15 0.36 -1.30 16 2 C 0.08 0.96 3.11 -26.74 -0.08 0.88 16 3 C -0.17 -1.81 9.53 37.15 0.35 -1.45 16 4 O -0.26 -4.42 7.86 -39.75 -0.31 -4.73 16 5 C 0.37 6.05 7.47 -16.61 -0.12 5.93 16 6 N -0.55 -7.59 8.64 -12.98 -0.11 -7.71 16 7 C 0.16 1.74 11.17 -17.49 -0.20 1.55 16 8 C -0.22 -2.41 10.09 -39.50 -0.40 -2.81 16 9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 10 C -0.20 -3.34 5.90 -104.69 -0.62 -3.96 16 11 C 0.56 10.63 7.58 -12.48 -0.09 10.54 16 12 O -0.53 -11.55 14.85 -16.48 -0.24 -11.79 16 13 N -0.70 -12.55 5.04 -53.20 -0.27 -12.82 16 14 C 0.12 2.16 2.91 -66.22 -0.19 1.97 16 15 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16 16 C -0.11 -1.87 5.23 -27.19 -0.14 -2.01 16 17 C -0.11 -1.81 5.76 -28.40 -0.16 -1.97 16 18 C -0.13 -2.58 4.96 -30.19 -0.15 -2.73 16 19 C 0.13 2.85 5.22 -5.21 -0.03 2.82 16 20 N -0.59 -13.77 2.62 -175.41 -0.46 -14.23 16 21 C -0.35 -9.14 9.46 -15.06 -0.14 -9.28 16 22 H 0.06 1.75 8.05 -52.49 -0.42 1.32 16 23 C -0.02 -0.42 4.53 -17.44 -0.08 -0.50 16 24 N -0.90 -24.84 11.99 55.49 0.67 -24.18 16 25 Si 1.04 24.60 30.05 -169.99 -5.11 19.49 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 C 0.15 3.25 4.75 -4.92 -0.02 3.23 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.09 6.99 -51.93 -0.36 0.73 16 34 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.15 1.75 6.52 -52.49 -0.34 1.41 16 40 H 0.40 6.63 6.54 -40.82 -0.27 6.36 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.32 6.58 -51.93 -0.34 0.98 16 43 H 0.06 1.07 6.28 -51.92 -0.33 0.74 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.52 4.65 -51.93 -0.24 1.28 16 47 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 48 H 0.09 2.38 5.61 -51.93 -0.29 2.08 16 49 H 0.27 7.27 4.95 -40.82 -0.20 7.07 16 50 H 0.04 1.00 7.81 -51.93 -0.41 0.59 16 51 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -31.45 395.20 -9.81 -41.25 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.82 Total: 8.30 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.10 Total: 0.46 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.17 Total: -58.93 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.56 Total: -16.52 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.11 Total: 19.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.45 -9.81 -41.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034567156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.642 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds