Wall clock time and date at job start Wed Apr 1 2020 04:52:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52995 * 109.47323 * 2 1
4 4 O 1.42901 * 109.47483 * 120.00060 * 2 1 3
5 5 C 1.35430 * 117.00082 * 149.99520 * 4 2 1
6 6 N 1.32238 * 119.80258 * 0.31721 * 5 4 2
7 7 C 1.31873 * 121.79949 * 180.30898 * 6 5 4
8 8 C 1.38358 * 121.18892 * 359.66298 * 7 6 5
9 9 C 1.38340 * 119.45475 * 0.02562 * 8 7 6
10 10 C 1.39989 * 118.34982 * 0.02562 * 9 8 7
11 11 C 1.47524 * 120.59533 * 180.02562 * 10 9 8
12 12 O 1.21584 * 119.99827 * 180.02562 * 11 10 9
13 13 N 1.34775 * 119.99807 * 359.97438 * 11 10 9
14 14 C 1.46503 * 119.99533 * 179.97438 * 13 11 10
15 15 H 1.08993 * 109.24980 * 324.66454 * 14 13 11
16 16 C 1.54835 * 109.35807 * 205.00102 * 14 13 11
17 17 C 1.50128 * 110.81811 * 200.93353 * 16 14 13
18 18 C 1.52527 * 105.41730 * 97.68195 * 17 16 14
19 19 C 1.46233 * 114.27683 * 270.59489 * 18 17 16
20 20 N 1.50169 * 107.53454 * 58.41004 * 19 18 17
21 21 C 1.36935 * 120.53539 * 109.56326 * 20 19 18
22 22 H 1.08002 * 119.99553 * 172.85164 * 21 20 19
23 23 C 1.38807 * 120.00159 * 352.84540 * 21 20 19
24 24 N 1.31610 * 120.00327 * 319.29761 * 23 21 20
25 25 Si 1.86800 * 119.99582 * 139.29640 * 23 21 20
26 26 H 1.48502 * 109.46986 * 269.99971 * 25 23 21
27 27 H 1.48503 * 109.47198 * 150.00496 * 25 23 21
28 28 H 1.48497 * 109.47483 * 30.00436 * 25 23 21
29 29 C 1.43437 * 118.92249 * 289.84046 * 20 19 18
30 30 H 1.09001 * 109.46968 * 299.99802 * 1 2 3
31 31 H 1.08998 * 109.47433 * 59.99821 * 1 2 3
32 32 H 1.09002 * 109.47531 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.47121 * 239.99691 * 2 1 3
34 34 H 1.09011 * 109.47317 * 180.02562 * 3 2 1
35 35 H 1.09003 * 109.47041 * 299.99936 * 3 2 1
36 36 H 1.08993 * 109.47206 * 60.00240 * 3 2 1
37 37 H 1.08001 * 119.40896 * 179.67491 * 7 6 5
38 38 H 1.08000 * 120.27277 * 180.02562 * 8 7 6
39 39 H 1.08001 * 120.82028 * 180.02562 * 9 8 7
40 40 H 0.97001 * 120.00245 * 0.02562 * 13 11 10
41 41 H 1.08998 * 109.21128 * 80.58938 * 16 14 13
42 42 H 1.09001 * 109.21368 * 321.27658 * 16 14 13
43 43 H 1.09011 * 110.24702 * 338.70901 * 17 16 14
44 44 H 1.08997 * 110.37073 * 216.72389 * 17 16 14
45 45 H 1.09000 * 108.52001 * 149.35402 * 18 17 16
46 46 H 1.08999 * 108.39746 * 31.75132 * 18 17 16
47 47 H 1.08997 * 109.85047 * 298.89701 * 19 18 17
48 48 H 1.08998 * 109.89795 * 177.94741 * 19 18 17
49 49 H 0.97004 * 120.00139 * 353.65886 * 24 23 21
50 50 H 1.08998 * 108.15268 * 213.02776 * 29 20 19
51 51 H 1.08993 * 108.15747 * 329.59428 * 29 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0063 -0.6736 1.1667
5 6 3.1965 -1.3119 1.0653
6 7 3.8616 -1.2848 -0.0773
7 6 5.0204 -1.8974 -0.2216
8 6 5.5979 -2.5939 0.8252
9 6 4.9484 -2.6498 2.0454
10 6 3.7190 -1.9929 2.1748
11 6 2.9843 -2.0199 3.4538
12 8 1.9171 -1.4460 3.5540
13 7 3.4955 -2.6816 4.5108
14 6 2.7661 -2.7079 5.7810
15 1 2.2610 -1.7529 5.9252
16 6 3.7643 -2.9411 6.9414
17 6 3.0575 -3.4724 8.1547
18 6 3.2611 -4.9834 8.1133
19 6 2.2284 -5.7093 7.3751
20 7 2.2113 -5.1708 5.9734
21 6 2.6633 -5.9333 4.9296
22 1 2.5414 -5.5855 3.9144
23 6 3.2782 -7.1530 5.1763
24 7 4.1213 -7.2739 6.1797
25 14 2.9091 -8.6228 4.0841
26 1 1.7546 -9.3742 4.6390
27 1 4.0981 -9.5109 4.0308
28 1 2.5812 -8.1519 2.7145
29 6 1.7195 -3.8426 5.7464
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3634 -1.0277 -0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 3.1301 1.4424 -0.0005
35 1 1.6766 1.9563 -0.8900
36 1 1.6767 1.9562 0.8899
37 1 5.5280 -1.8545 -1.1739
38 1 6.5477 -3.0899 0.6908
39 1 5.3793 -3.1869 2.8774
40 1 4.3468 -3.1398 4.4307
41 1 4.2486 -1.9975 7.1930
42 1 4.5214 -3.6585 6.6246
43 1 1.9950 -3.2334 8.1071
44 1 3.4966 -3.0572 9.0618
45 1 3.2832 -5.3579 9.1367
46 1 4.2264 -5.1879 7.6501
47 1 1.2575 -5.5507 7.8443
48 1 2.4623 -6.7738 7.3597
49 1 4.3837 -6.4916 6.6897
50 1 1.2354 -3.8220 4.7700
51 1 0.9618 -3.6277 6.4998
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001034567156.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:52:04
Heat of formation + Delta-G solvation = -5.610126 kcal
Electronic energy + Delta-G solvation = -32308.231616 eV
Core-core repulsion = 28209.141563 eV
Total energy + Delta-G solvation = -4099.090053 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.28 seconds
Orbital eigenvalues (eV)
-40.88104 -39.22870 -38.22730 -37.72544 -34.43857 -33.39984 -33.24089 -32.66811
-31.09224 -30.44104 -29.63433 -27.34151 -26.12408 -24.81554 -24.15079 -23.53107
-22.64543 -21.30680 -20.64625 -19.96336 -19.30833 -18.50557 -17.29624 -17.10893
-16.82809 -15.78643 -15.52677 -15.14932 -15.10286 -14.63868 -14.51908 -14.31446
-14.16375 -13.75331 -13.63977 -13.42204 -13.15449 -13.03483 -12.67220 -12.47003
-12.37938 -12.34620 -12.34023 -12.11013 -12.00188 -11.80968 -11.05216 -10.99554
-10.83895 -10.82067 -10.56287 -10.38850 -10.16254 -10.06108 -9.94224 -9.92534
-9.81198 -9.73018 -9.46253 -9.26489 -8.69026 -8.47042 -8.12407 -6.94994
-6.16996 -3.01726 0.73010 1.22916 2.99707 3.18002 3.52754 3.56905
3.58598 3.71982 3.96183 4.19767 4.60943 4.71058 4.81930 4.84452
4.91372 4.97059 5.11557 5.15178 5.16037 5.21624 5.31783 5.41768
5.45160 5.46301 5.65752 5.68771 5.71097 5.73031 5.82483 5.96049
5.99824 6.01541 6.05043 6.06882 6.10546 6.26057 6.32833 6.36663
6.40191 6.60417 6.69827 6.70520 6.87233 6.93490 7.13321 7.23891
7.25568 7.30930 7.71255 7.98885 8.06566 8.53349 8.72385 9.08345
9.86062 10.30948 11.13372
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011253 B = 0.003586 C = 0.003207
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2487.732744 B = 7806.414698 C = 8727.450215
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.075 3.925
3 C -0.166 4.166
4 O -0.262 6.262
5 C 0.372 3.628
6 N -0.549 5.549
7 C 0.159 3.841
8 C -0.221 4.221
9 C -0.005 4.005
10 C -0.202 4.202
11 C 0.560 3.440
12 O -0.529 6.529
13 N -0.701 5.701
14 C 0.117 3.883
15 H 0.075 0.925
16 C -0.111 4.111
17 C -0.110 4.110
18 C -0.135 4.135
19 C 0.129 3.871
20 N -0.587 5.587
21 C -0.349 4.349
22 H 0.063 0.937
23 C -0.016 4.016
24 N -0.903 5.903
25 Si 1.036 2.964
26 H -0.295 1.295
27 H -0.294 1.294
28 H -0.294 1.294
29 C 0.153 3.847
30 H 0.067 0.933
31 H 0.073 0.927
32 H 0.064 0.936
33 H 0.087 0.913
34 H 0.059 0.941
35 H 0.068 0.932
36 H 0.062 0.938
37 H 0.161 0.839
38 H 0.142 0.858
39 H 0.145 0.855
40 H 0.396 0.604
41 H 0.045 0.955
42 H 0.071 0.929
43 H 0.064 0.936
44 H 0.055 0.945
45 H 0.039 0.961
46 H 0.071 0.929
47 H 0.023 0.977
48 H 0.095 0.905
49 H 0.273 0.727
50 H 0.042 0.958
51 H 0.037 0.963
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.130 13.328 -8.214 15.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.019 3.981
3 C -0.224 4.224
4 O -0.167 6.167
5 C 0.192 3.808
6 N -0.273 5.273
7 C 0.002 3.998
8 C -0.242 4.242
9 C -0.031 4.031
10 C -0.208 4.208
11 C 0.346 3.654
12 O -0.406 6.406
13 N -0.351 5.351
14 C 0.010 3.990
15 H 0.094 0.906
16 C -0.150 4.150
17 C -0.148 4.148
18 C -0.174 4.174
19 C 0.005 3.995
20 N -0.308 5.308
21 C -0.477 4.477
22 H 0.081 0.919
23 C -0.218 4.218
24 N -0.545 5.545
25 Si 0.867 3.133
26 H -0.222 1.222
27 H -0.221 1.221
28 H -0.221 1.221
29 C 0.023 3.977
30 H 0.086 0.914
31 H 0.092 0.908
32 H 0.083 0.917
33 H 0.105 0.895
34 H 0.078 0.922
35 H 0.087 0.913
36 H 0.081 0.919
37 H 0.179 0.821
38 H 0.160 0.840
39 H 0.163 0.837
40 H 0.230 0.770
41 H 0.063 0.937
42 H 0.089 0.911
43 H 0.083 0.917
44 H 0.073 0.927
45 H 0.058 0.942
46 H 0.089 0.911
47 H 0.042 0.958
48 H 0.113 0.887
49 H 0.086 0.914
50 H 0.060 0.940
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 1.036 12.585 -8.825 15.406
hybrid contribution 0.790 0.937 0.495 1.322
sum 1.826 13.522 -8.330 15.987
Atomic orbital electron populations
1.21870 0.92802 1.03201 1.02743 1.22399 0.94823 0.92727 0.88169
1.22202 1.01836 0.95821 1.02499 1.86614 1.30215 1.62680 1.37148
1.19807 0.85590 0.87260 0.88169 1.67378 1.10924 1.25003 1.24036
1.22580 0.89147 0.89410 0.98651 1.21911 1.03229 1.04966 0.94057
1.21733 0.91351 0.91938 0.98098 1.20179 0.98425 1.06899 0.95342
1.17664 0.85286 0.79474 0.82997 1.90782 1.21283 1.45238 1.83339
1.45868 1.24770 1.52928 1.11563 1.22753 0.94342 1.00601 0.81347
0.90649 1.21665 0.98385 1.00091 0.94818 1.20941 1.00615 0.96891
0.96360 1.21091 1.02633 0.94336 0.99338 1.20595 0.94875 1.00251
0.83791 1.44378 1.73477 1.09547 1.03419 1.19926 1.38307 1.02285
0.87148 0.91885 1.25346 0.95387 0.99837 1.01209 1.70837 1.25264
1.34884 1.23556 0.83947 0.76369 0.77432 0.75570 1.22238 1.22067
1.22087 1.20621 0.93214 0.84588 0.99311 0.91403 0.90793 0.91733
0.89530 0.92226 0.91279 0.91876 0.82142 0.84001 0.83692 0.76968
0.93667 0.91069 0.91729 0.92651 0.94225 0.91063 0.95832 0.88746
0.91384 0.93997 0.94461
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 20.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.65 9.56 37.15 0.36 -1.30 16
2 C 0.08 0.96 3.11 -26.74 -0.08 0.88 16
3 C -0.17 -1.81 9.53 37.15 0.35 -1.45 16
4 O -0.26 -4.42 7.86 -39.75 -0.31 -4.73 16
5 C 0.37 6.05 7.47 -16.61 -0.12 5.93 16
6 N -0.55 -7.59 8.64 -12.98 -0.11 -7.71 16
7 C 0.16 1.74 11.17 -17.49 -0.20 1.55 16
8 C -0.22 -2.41 10.09 -39.50 -0.40 -2.81 16
9 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16
10 C -0.20 -3.34 5.90 -104.69 -0.62 -3.96 16
11 C 0.56 10.63 7.58 -12.48 -0.09 10.54 16
12 O -0.53 -11.55 14.85 -16.48 -0.24 -11.79 16
13 N -0.70 -12.55 5.04 -53.20 -0.27 -12.82 16
14 C 0.12 2.16 2.91 -66.22 -0.19 1.97 16
15 H 0.08 1.40 7.57 -51.93 -0.39 1.01 16
16 C -0.11 -1.87 5.23 -27.19 -0.14 -2.01 16
17 C -0.11 -1.81 5.76 -28.40 -0.16 -1.97 16
18 C -0.13 -2.58 4.96 -30.19 -0.15 -2.73 16
19 C 0.13 2.85 5.22 -5.21 -0.03 2.82 16
20 N -0.59 -13.77 2.62 -175.41 -0.46 -14.23 16
21 C -0.35 -9.14 9.46 -15.06 -0.14 -9.28 16
22 H 0.06 1.75 8.05 -52.49 -0.42 1.32 16
23 C -0.02 -0.42 4.53 -17.44 -0.08 -0.50 16
24 N -0.90 -24.84 11.99 55.49 0.67 -24.18 16
25 Si 1.04 24.60 30.05 -169.99 -5.11 19.49 16
26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
29 C 0.15 3.25 4.75 -4.92 -0.02 3.23 16
30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16
31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
33 H 0.09 1.09 6.99 -51.93 -0.36 0.73 16
34 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16
35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16
38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16
39 H 0.15 1.75 6.52 -52.49 -0.34 1.41 16
40 H 0.40 6.63 6.54 -40.82 -0.27 6.36 16
41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.07 1.32 6.58 -51.93 -0.34 0.98 16
43 H 0.06 1.07 6.28 -51.92 -0.33 0.74 16
44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
46 H 0.07 1.52 4.65 -51.93 -0.24 1.28 16
47 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16
48 H 0.09 2.38 5.61 -51.93 -0.29 2.08 16
49 H 0.27 7.27 4.95 -40.82 -0.20 7.07 16
50 H 0.04 1.00 7.81 -51.93 -0.41 0.59 16
51 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16
LS Contribution 395.20 15.07 5.96 5.96
Total: -1.00 -31.45 395.20 -9.81 -41.25
By element:
Atomic # 1 Polarization: 16.12 SS G_CDS: -7.82 Total: 8.30 kcal
Atomic # 6 Polarization: 2.56 SS G_CDS: -2.10 Total: 0.46 kcal
Atomic # 7 Polarization: -58.76 SS G_CDS: -0.17 Total: -58.93 kcal
Atomic # 8 Polarization: -15.96 SS G_CDS: -0.56 Total: -16.52 kcal
Atomic # 14 Polarization: 24.60 SS G_CDS: -5.11 Total: 19.49 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -31.45 -9.81 -41.25 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001034567156.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.642 kcal
(2) G-P(sol) polarization free energy of solvation -31.446 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.196 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.610 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.28 seconds