Wall clock time and date at job start Wed Apr 1 2020 04:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47323 * 2 1 4 4 O 1.42901 * 109.47483 * 120.00060 * 2 1 3 5 5 C 1.35430 * 117.00082 * 149.99520 * 4 2 1 6 6 N 1.32238 * 119.80258 * 0.31721 * 5 4 2 7 7 C 1.31873 * 121.79949 * 180.30898 * 6 5 4 8 8 C 1.38358 * 121.18892 * 359.66298 * 7 6 5 9 9 C 1.38340 * 119.45475 * 0.02562 * 8 7 6 10 10 C 1.39989 * 118.34982 * 0.02562 * 9 8 7 11 11 C 1.47524 * 120.59533 * 180.02562 * 10 9 8 12 12 O 1.21584 * 119.99827 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99807 * 359.97438 * 11 10 9 14 14 C 1.46503 * 119.99533 * 179.97438 * 13 11 10 15 15 H 1.08993 * 109.24980 * 324.66454 * 14 13 11 16 16 C 1.54835 * 109.35807 * 205.00102 * 14 13 11 17 17 C 1.50128 * 110.81811 * 200.93353 * 16 14 13 18 18 C 1.52527 * 105.41730 * 97.68195 * 17 16 14 19 19 C 1.46233 * 114.27683 * 270.59489 * 18 17 16 20 20 N 1.50169 * 107.53454 * 58.41004 * 19 18 17 21 21 C 1.36935 * 120.53539 * 109.56326 * 20 19 18 22 22 H 1.08002 * 119.99553 * 172.85164 * 21 20 19 23 23 C 1.38807 * 120.00159 * 352.84540 * 21 20 19 24 24 N 1.31610 * 120.00327 * 319.29761 * 23 21 20 25 25 Si 1.86800 * 119.99582 * 139.29640 * 23 21 20 26 26 H 1.48502 * 109.46986 * 269.99971 * 25 23 21 27 27 H 1.48503 * 109.47198 * 150.00496 * 25 23 21 28 28 H 1.48497 * 109.47483 * 30.00436 * 25 23 21 29 29 C 1.43437 * 118.92249 * 289.84046 * 20 19 18 30 30 H 1.09001 * 109.46968 * 299.99802 * 1 2 3 31 31 H 1.08998 * 109.47433 * 59.99821 * 1 2 3 32 32 H 1.09002 * 109.47531 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47121 * 239.99691 * 2 1 3 34 34 H 1.09011 * 109.47317 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47041 * 299.99936 * 3 2 1 36 36 H 1.08993 * 109.47206 * 60.00240 * 3 2 1 37 37 H 1.08001 * 119.40896 * 179.67491 * 7 6 5 38 38 H 1.08000 * 120.27277 * 180.02562 * 8 7 6 39 39 H 1.08001 * 120.82028 * 180.02562 * 9 8 7 40 40 H 0.97001 * 120.00245 * 0.02562 * 13 11 10 41 41 H 1.08998 * 109.21128 * 80.58938 * 16 14 13 42 42 H 1.09001 * 109.21368 * 321.27658 * 16 14 13 43 43 H 1.09011 * 110.24702 * 338.70901 * 17 16 14 44 44 H 1.08997 * 110.37073 * 216.72389 * 17 16 14 45 45 H 1.09000 * 108.52001 * 149.35402 * 18 17 16 46 46 H 1.08999 * 108.39746 * 31.75132 * 18 17 16 47 47 H 1.08997 * 109.85047 * 298.89701 * 19 18 17 48 48 H 1.08998 * 109.89795 * 177.94741 * 19 18 17 49 49 H 0.97004 * 120.00139 * 353.65886 * 24 23 21 50 50 H 1.08998 * 108.15268 * 213.02776 * 29 20 19 51 51 H 1.08993 * 108.15747 * 329.59428 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 3.1965 -1.3119 1.0653 6 7 3.8616 -1.2848 -0.0773 7 6 5.0204 -1.8974 -0.2216 8 6 5.5979 -2.5939 0.8252 9 6 4.9484 -2.6498 2.0454 10 6 3.7190 -1.9929 2.1748 11 6 2.9843 -2.0199 3.4538 12 8 1.9171 -1.4460 3.5540 13 7 3.4955 -2.6816 4.5108 14 6 2.7661 -2.7079 5.7810 15 1 2.2610 -1.7529 5.9252 16 6 3.7643 -2.9411 6.9414 17 6 3.0575 -3.4724 8.1547 18 6 3.2611 -4.9834 8.1133 19 6 2.2284 -5.7093 7.3751 20 7 2.2113 -5.1708 5.9734 21 6 2.6633 -5.9333 4.9296 22 1 2.5414 -5.5855 3.9144 23 6 3.2782 -7.1530 5.1763 24 7 4.1213 -7.2739 6.1797 25 14 2.9091 -8.6228 4.0841 26 1 1.7546 -9.3742 4.6390 27 1 4.0981 -9.5109 4.0308 28 1 2.5812 -8.1519 2.7145 29 6 1.7195 -3.8426 5.7464 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 5.5280 -1.8545 -1.1739 38 1 6.5477 -3.0899 0.6908 39 1 5.3793 -3.1869 2.8774 40 1 4.3468 -3.1398 4.4307 41 1 4.2486 -1.9975 7.1930 42 1 4.5214 -3.6585 6.6246 43 1 1.9950 -3.2334 8.1071 44 1 3.4966 -3.0572 9.0618 45 1 3.2832 -5.3579 9.1367 46 1 4.2264 -5.1879 7.6501 47 1 1.2575 -5.5507 7.8443 48 1 2.4623 -6.7738 7.3597 49 1 4.3837 -6.4916 6.6897 50 1 1.2354 -3.8220 4.7700 51 1 0.9618 -3.6277 6.4998 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034567156.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:03 Heat of formation + Delta-G solvation = -24.471473 kcal Electronic energy + Delta-G solvation = -32309.049505 eV Core-core repulsion = 28209.141563 eV Total energy + Delta-G solvation = -4099.907943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00376 -40.69251 -39.44413 -39.14408 -36.09091 -34.96878 -34.25152 -33.86082 -32.89713 -31.73327 -30.97986 -28.22312 -27.87673 -26.20042 -25.41897 -24.87786 -24.22179 -22.44210 -22.11257 -21.35803 -20.90782 -19.61121 -19.00392 -18.56336 -17.97837 -17.02462 -16.90284 -16.57336 -16.40435 -16.02642 -15.90224 -15.61925 -15.51767 -15.37617 -15.12874 -14.71192 -14.32803 -14.30597 -14.05975 -13.95388 -13.72402 -13.44479 -13.43112 -13.31238 -13.22468 -12.89601 -12.75720 -12.52015 -12.43483 -12.17262 -11.95225 -11.94169 -11.79719 -11.74963 -11.53677 -11.27971 -11.19497 -11.10878 -11.03868 -10.56900 -10.35628 -9.99804 -9.53822 -8.84774 -8.25904 -5.06118 -0.34784 0.20663 1.60262 1.62705 1.82186 1.89254 1.97823 2.22932 2.67248 2.80106 3.14503 3.22395 3.46318 3.69072 3.74151 3.82365 3.89612 3.96037 3.99360 4.01276 4.14812 4.21182 4.25530 4.38598 4.42707 4.45761 4.52148 4.64408 4.68347 4.74777 4.77867 4.78016 4.82894 4.87014 4.93285 5.06484 5.07253 5.13242 5.15795 5.16718 5.20520 5.30345 5.39897 5.42594 5.49340 5.62569 5.64990 5.93147 6.26908 6.50599 6.56753 6.73642 7.11301 7.27790 7.88300 8.32972 9.06945 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.003586 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.732744 B = 7806.414698 C = 8727.450215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.157 4.157 4 O -0.293 6.293 5 C 0.355 3.645 6 N -0.554 5.554 7 C 0.166 3.834 8 C -0.209 4.209 9 C -0.009 4.009 10 C -0.238 4.238 11 C 0.556 3.444 12 O -0.568 6.568 13 N -0.698 5.698 14 C 0.124 3.876 15 H 0.076 0.924 16 C -0.101 4.101 17 C -0.102 4.102 18 C -0.127 4.127 19 C 0.131 3.869 20 N -0.597 5.597 21 C -0.348 4.348 22 H 0.040 0.960 23 C -0.051 4.051 24 N -0.923 5.923 25 Si 1.078 2.922 26 H -0.294 1.294 27 H -0.294 1.294 28 H -0.289 1.289 29 C 0.159 3.841 30 H 0.057 0.943 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.207 0.793 38 H 0.181 0.819 39 H 0.152 0.848 40 H 0.401 0.599 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.036 0.964 48 H 0.062 0.938 49 H 0.272 0.728 50 H 0.005 0.995 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 14.102 -9.112 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.011 3.989 3 C -0.215 4.215 4 O -0.199 6.199 5 C 0.175 3.825 6 N -0.279 5.279 7 C 0.010 3.990 8 C -0.229 4.229 9 C -0.035 4.035 10 C -0.244 4.244 11 C 0.344 3.656 12 O -0.449 6.449 13 N -0.348 5.348 14 C 0.016 3.984 15 H 0.094 0.906 16 C -0.139 4.139 17 C -0.140 4.140 18 C -0.166 4.166 19 C 0.008 3.992 20 N -0.320 5.320 21 C -0.477 4.477 22 H 0.058 0.942 23 C -0.250 4.250 24 N -0.566 5.566 25 Si 0.907 3.093 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.215 1.215 29 C 0.029 3.971 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.224 0.776 38 H 0.198 0.802 39 H 0.170 0.830 40 H 0.236 0.764 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.106 0.894 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.024 0.976 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.518 13.371 -9.714 16.718 hybrid contribution 0.333 0.703 0.686 1.038 sum 2.850 14.075 -9.028 16.963 Atomic orbital electron populations 1.21898 0.91887 1.02614 1.03845 1.22688 0.95622 0.93486 0.87149 1.22141 1.01174 0.94705 1.03450 1.86575 1.30893 1.63247 1.39198 1.19966 0.85878 0.87730 0.88893 1.67481 1.11959 1.25611 1.22830 1.23446 0.87926 0.87287 1.00383 1.22349 1.04073 1.03872 0.92560 1.21941 0.90429 0.91475 0.99695 1.20128 1.00099 1.09753 0.94467 1.18140 0.84935 0.78603 0.83934 1.90738 1.23009 1.46967 1.84137 1.45828 1.24804 1.52764 1.11368 1.22555 0.94302 0.98990 0.82542 0.90646 1.21585 0.97366 1.00947 0.94043 1.20934 1.00954 0.94624 0.97483 1.20925 1.00085 0.96200 0.99404 1.20556 0.96431 0.98811 0.83420 1.44396 1.73594 1.10332 1.03647 1.19819 1.37884 1.03041 0.86910 0.94249 1.26131 0.95359 1.01396 1.02112 1.70871 1.26252 1.35070 1.24451 0.83337 0.75962 0.75291 0.74716 1.22154 1.22053 1.21482 1.20567 0.94121 0.84806 0.97566 0.92417 0.87466 0.93151 0.89400 0.93109 0.88388 0.92749 0.77618 0.80168 0.83025 0.76365 0.90956 0.92874 0.91597 0.89386 0.92488 0.93329 0.94609 0.91921 0.91500 0.97647 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.56 71.98 0.69 -2.56 16 2 C 0.07 1.71 3.11 30.59 0.09 1.81 16 3 C -0.16 -3.33 9.53 71.98 0.69 -2.65 16 4 O -0.29 -10.36 7.86 -66.44 -0.52 -10.88 16 5 C 0.35 11.78 7.47 85.13 0.64 12.41 16 6 N -0.55 -14.70 8.64 -308.00 -2.66 -17.36 16 7 C 0.17 3.15 11.17 84.72 0.95 4.09 16 8 C -0.21 -3.94 10.09 22.32 0.23 -3.72 16 9 C -0.01 -0.25 9.64 22.72 0.22 -0.03 16 10 C -0.24 -8.09 5.90 -19.91 -0.12 -8.21 16 11 C 0.56 22.13 7.58 86.69 0.66 22.79 16 12 O -0.57 -26.28 14.85 16.83 0.25 -26.03 16 13 N -0.70 -25.77 5.04 -440.49 -2.22 -27.98 16 14 C 0.12 4.61 2.91 46.10 0.13 4.74 16 15 H 0.08 2.83 7.57 -2.39 -0.02 2.82 16 16 C -0.10 -3.27 5.23 30.30 0.16 -3.11 16 17 C -0.10 -3.13 5.76 29.51 0.17 -2.96 16 18 C -0.13 -4.74 4.96 28.35 0.14 -4.60 16 19 C 0.13 5.82 5.22 83.58 0.44 6.26 16 20 N -0.60 -28.60 2.62 -708.87 -1.86 -30.46 16 21 C -0.35 -18.71 9.46 84.03 0.80 -17.92 16 22 H 0.04 2.28 8.05 -2.91 -0.02 2.25 16 23 C -0.05 -2.73 4.53 84.86 0.38 -2.34 16 24 N -0.92 -51.32 11.99 21.65 0.26 -51.06 16 25 Si 1.08 50.40 30.05 68.60 2.06 52.47 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 29 C 0.16 6.93 4.75 87.42 0.41 7.35 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 2.19 6.99 -2.38 -0.02 2.17 16 34 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.21 1.95 8.06 -2.91 -0.02 1.93 16 38 H 0.18 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.15 3.61 6.52 -2.91 -0.02 3.59 16 40 H 0.40 13.77 6.54 -92.71 -0.61 13.16 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.05 1.94 6.58 -2.39 -0.02 1.92 16 43 H 0.07 2.03 6.28 -2.38 -0.01 2.02 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 2.06 4.65 -2.39 -0.01 2.05 16 47 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 48 H 0.06 3.20 5.61 -2.39 -0.01 3.18 16 49 H 0.27 14.71 4.95 -92.71 -0.46 14.25 16 50 H 0.01 0.26 7.81 -2.39 -0.02 0.24 16 51 H 0.05 1.94 6.89 -2.39 -0.02 1.92 16 Total: -1.00 -71.91 395.20 2.63 -69.28 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.65 Total: 30.66 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 6.67 Total: 11.36 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -6.48 Total: -126.87 kcal Atomic # 8 Polarization: -36.63 SS G_CDS: -0.27 Total: -36.91 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.06 Total: 52.47 kcal Total: -71.91 2.63 -69.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034567156.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.812 kcal (2) G-P(sol) polarization free energy of solvation -71.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds