Wall clock time and date at job start Wed Apr 1 2020 04:57:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52992 * 109.47321 * 2 1
4 4 O 1.42903 * 109.47076 * 179.97438 * 3 2 1
5 5 C 1.35654 * 117.00073 * 179.97438 * 4 3 2
6 6 C 1.39344 * 120.53783 * 0.02863 * 5 4 3
7 7 C 1.38301 * 118.43735 * 179.97438 * 6 5 4
8 8 C 1.38771 * 119.44426 * 359.97438 * 7 6 5
9 9 N 1.31373 * 121.06613 * 359.72277 * 8 7 6
10 10 C 1.32859 * 121.69677 * 0.57503 * 9 8 7
11 11 C 1.47835 * 119.78251 * 179.70997 * 10 9 8
12 12 O 1.21559 * 119.99518 * 172.15803 * 11 10 9
13 13 N 1.34777 * 119.99777 * 352.15203 * 11 10 9
14 14 C 1.46916 * 120.63317 * 352.17156 * 13 11 10
15 15 C 1.53199 * 108.77537 * 233.58581 * 14 13 11
16 16 C 1.53040 * 109.30914 * 305.36366 * 15 14 13
17 17 H 1.08998 * 109.46164 * 301.35649 * 16 15 14
18 18 N 1.46506 * 109.45971 * 181.38390 * 16 15 14
19 19 C 1.36927 * 119.99736 * 84.99627 * 18 16 15
20 20 H 1.08002 * 120.00284 * 0.02562 * 19 18 16
21 21 C 1.38817 * 119.99965 * 179.97438 * 19 18 16
22 22 N 1.31622 * 119.99751 * 0.02562 * 21 19 18
23 23 Si 1.86796 * 120.00005 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47097 * 180.02562 * 23 21 19
25 25 H 1.48494 * 109.47469 * 300.00670 * 23 21 19
26 26 H 1.48503 * 109.46999 * 60.01065 * 23 21 19
27 27 C 1.53044 * 109.53987 * 61.36784 * 16 15 14
28 28 H 1.08999 * 109.49740 * 58.58189 * 27 16 15
29 29 C 1.52993 * 109.50121 * 178.68141 * 27 16 15
30 30 C 1.46927 * 120.62375 * 172.14576 * 13 11 10
31 31 H 1.09001 * 109.46792 * 300.00011 * 1 2 3
32 32 H 1.09002 * 109.47008 * 59.99707 * 1 2 3
33 33 H 1.08998 * 109.47683 * 179.97438 * 1 2 3
34 34 H 1.09003 * 109.47005 * 239.99486 * 2 1 3
35 35 H 1.09002 * 109.47008 * 120.00293 * 2 1 3
36 36 H 1.09001 * 109.47197 * 60.00236 * 3 2 1
37 37 H 1.09002 * 109.47319 * 300.00103 * 3 2 1
38 38 H 1.07999 * 120.78086 * 359.97438 * 6 5 4
39 39 H 1.07995 * 120.27441 * 179.97438 * 7 6 5
40 40 H 1.08003 * 119.46322 * 180.02562 * 8 7 6
41 41 H 1.08996 * 109.58885 * 113.80239 * 14 13 11
42 42 H 1.09002 * 109.70802 * 353.43922 * 14 13 11
43 43 H 1.08999 * 109.49853 * 185.41325 * 15 14 13
44 44 H 1.09000 * 109.49401 * 65.31046 * 15 14 13
45 45 H 0.96999 * 119.99817 * 265.00214 * 18 16 15
46 46 H 0.97002 * 119.99480 * 180.02562 * 22 21 19
47 47 H 1.09009 * 109.47270 * 59.99593 * 29 27 16
48 48 H 1.08998 * 109.47380 * 179.97438 * 29 27 16
49 49 H 1.09005 * 109.47300 * 300.00090 * 29 27 16
50 50 H 1.09006 * 109.58780 * 246.19758 * 30 13 11
51 51 H 1.08999 * 109.59379 * 6.62846 * 30 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 3.4690 1.4423 0.0006
5 6 4.0850 2.6510 0.0001
6 6 3.3371 3.8267 -0.0003
7 6 4.0098 5.0351 -0.0002
8 6 5.3975 5.0434 0.0008
9 7 6.0821 3.9222 0.0072
10 6 5.4811 2.7373 0.0015
11 6 6.2932 1.5020 0.0025
12 8 5.7549 0.4209 0.1411
13 7 7.6304 1.5745 -0.1502
14 6 8.2771 2.8495 -0.4887
15 6 9.1458 2.6464 -1.7341
16 6 10.1209 1.4928 -1.4882
17 1 10.7400 1.7193 -0.6202
18 7 10.9758 1.3171 -2.6650
19 6 12.1094 2.0720 -2.8064
20 1 12.3736 2.7965 -2.0504
21 6 12.9198 1.9052 -3.9211
22 7 12.5981 1.0217 -4.8423
23 14 14.4666 2.9344 -4.1137
24 1 15.1506 2.5680 -5.3799
25 1 14.1027 4.3737 -4.1469
26 1 15.3763 2.6801 -2.9678
27 6 9.3355 0.2045 -1.2318
28 1 8.6975 -0.0094 -2.0893
29 6 10.3111 -0.9546 -1.0187
30 6 8.4689 0.3800 0.0192
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 0.5139 -0.8900
33 1 -0.3634 -1.0276 -0.0005
34 1 1.8933 -0.5139 -0.8900
35 1 1.8933 -0.5139 0.8900
36 1 1.6767 1.9562 0.8900
37 1 1.6767 1.9563 -0.8900
38 1 2.2576 3.7951 -0.0007
39 1 3.4597 5.9645 -0.0009
40 1 5.9231 5.9869 0.0013
41 1 8.9016 3.1747 0.3433
42 1 7.5175 3.6043 -0.6923
43 1 9.7059 3.5586 -1.9398
44 1 8.5095 2.4094 -2.5868
45 1 10.7387 0.6661 -3.3438
46 1 13.1646 0.9050 -5.6210
47 1 10.9478 -0.7405 -0.1602
48 1 9.7513 -1.8718 -0.8357
49 1 10.9295 -1.0773 -1.9080
50 1 9.1091 0.5038 0.8927
51 1 7.8343 -0.4965 0.1500
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001036158176.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:57:15
Heat of formation + Delta-G solvation = -12.543268 kcal
Electronic energy + Delta-G solvation = -31237.831985 eV
Core-core repulsion = 27138.441288 eV
Total energy + Delta-G solvation = -4099.390697 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.26388 -39.51692 -38.57788 -37.38834 -34.58273 -34.24865 -33.12944 -32.21297
-31.29151 -30.78003 -29.15370 -27.13981 -26.50200 -25.27026 -24.18872 -23.27312
-22.55763 -21.75226 -21.48931 -20.31950 -19.24266 -18.34258 -17.53186 -17.00172
-16.86275 -16.71545 -15.76153 -15.39529 -15.27024 -14.82271 -14.75509 -14.40353
-14.27305 -13.94020 -13.81340 -13.47296 -13.42580 -13.20555 -13.05395 -12.70433
-12.51188 -12.34960 -12.31859 -12.04574 -11.96821 -11.59969 -11.44625 -11.32460
-11.06276 -11.03223 -10.85048 -10.73032 -10.52115 -10.32245 -10.16909 -10.15908
-9.94954 -9.66872 -9.50244 -9.11657 -8.75525 -8.67007 -8.19849 -6.86096
-5.70224 -2.97878 0.43862 0.90838 2.72443 2.78358 3.16825 3.47299
3.51739 3.52652 3.68456 4.04160 4.23252 4.34167 4.47505 4.51773
4.64044 4.65674 4.77958 4.81062 4.98427 4.99910 5.09810 5.23600
5.34599 5.39719 5.51411 5.56092 5.59609 5.62787 5.64492 5.69316
5.74840 5.82617 5.85547 5.90739 5.98839 6.06524 6.21231 6.23375
6.44959 6.52694 6.57888 6.63580 6.71990 6.84492 6.95647 6.97895
7.09290 7.22819 7.45678 7.73924 7.75395 8.39248 8.48471 9.59365
10.18690 10.53865 11.52476
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015774 B = 0.002494 C = 0.002293
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1774.620057 B =11222.201079 C =12207.370596
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.123 4.123
3 C 0.050 3.950
4 O -0.270 6.270
5 C 0.139 3.861
6 C -0.176 4.176
7 C -0.108 4.108
8 C 0.051 3.949
9 N -0.405 5.405
10 C 0.050 3.950
11 C 0.568 3.432
12 O -0.526 6.526
13 N -0.586 5.586
14 C 0.073 3.927
15 C -0.150 4.150
16 C 0.182 3.818
17 H 0.046 0.954
18 N -0.722 5.722
19 C -0.233 4.233
20 H 0.069 0.931
21 C -0.016 4.016
22 N -0.934 5.934
23 Si 0.905 3.095
24 H -0.292 1.292
25 H -0.287 1.287
26 H -0.287 1.287
27 C -0.109 4.109
28 H 0.068 0.932
29 C -0.135 4.135
30 C 0.120 3.880
31 H 0.056 0.944
32 H 0.056 0.944
33 H 0.065 0.935
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.062 0.938
37 H 0.062 0.938
38 H 0.144 0.856
39 H 0.142 0.858
40 H 0.167 0.833
41 H 0.058 0.942
42 H 0.140 0.860
43 H 0.072 0.928
44 H 0.053 0.947
45 H 0.383 0.617
46 H 0.254 0.746
47 H 0.050 0.950
48 H 0.042 0.958
49 H 0.073 0.927
50 H 0.066 0.934
51 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.834 5.403 12.664 28.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.161 4.161
3 C -0.025 4.025
4 O -0.180 6.180
5 C 0.088 3.912
6 C -0.203 4.203
7 C -0.128 4.128
8 C -0.108 4.108
9 N -0.117 5.117
10 C -0.088 4.088
11 C 0.354 3.646
12 O -0.403 6.403
13 N -0.318 5.318
14 C -0.050 4.050
15 C -0.191 4.191
16 C 0.072 3.928
17 H 0.064 0.936
18 N -0.362 5.362
19 C -0.365 4.365
20 H 0.087 0.913
21 C -0.211 4.211
22 N -0.583 5.583
23 Si 0.736 3.264
24 H -0.218 1.218
25 H -0.214 1.214
26 H -0.214 1.214
27 C -0.129 4.129
28 H 0.087 0.913
29 C -0.193 4.193
30 C -0.003 4.003
31 H 0.075 0.925
32 H 0.076 0.924
33 H 0.084 0.916
34 H 0.096 0.904
35 H 0.095 0.905
36 H 0.080 0.920
37 H 0.081 0.919
38 H 0.162 0.838
39 H 0.160 0.840
40 H 0.184 0.816
41 H 0.077 0.923
42 H 0.157 0.843
43 H 0.091 0.909
44 H 0.072 0.928
45 H 0.217 0.783
46 H 0.064 0.936
47 H 0.069 0.931
48 H 0.061 0.939
49 H 0.092 0.908
50 H 0.084 0.916
51 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -23.973 4.682 12.755 27.556
hybrid contribution -0.170 0.786 -0.532 0.965
sum -24.143 5.468 12.222 27.607
Atomic orbital electron populations
1.21695 0.94276 1.02645 1.01985 1.21457 0.95686 0.94482 1.04428
1.23035 0.78663 0.99602 1.01200 1.86414 1.20753 1.24612 1.86242
1.19955 0.92161 0.85699 0.93346 1.21753 1.01013 0.91869 1.05637
1.22179 0.95746 0.98357 0.96551 1.22939 0.91542 0.96917 0.99443
1.67796 1.37295 0.97650 1.08977 1.20819 0.88607 0.93010 1.06389
1.17607 0.81988 0.87027 0.77951 1.90798 1.71186 1.27855 1.50430
1.47960 1.05165 1.11365 1.67265 1.23065 0.98826 0.85776 0.97338
1.22668 0.98289 1.01727 0.96453 1.20244 0.90281 0.90890 0.91361
0.93564 1.42416 1.25305 1.46433 1.22037 1.19187 0.99059 1.14405
1.03815 0.91323 1.24723 0.99307 0.99690 0.97407 1.69656 1.39574
1.37389 1.11645 0.86296 0.83416 0.79800 0.76845 1.21836 1.21393
1.21378 1.21723 0.96784 0.97290 0.97070 0.91346 1.21658 0.98666
0.96036 1.02964 1.21743 0.92866 0.87857 0.97841 0.92484 0.92443
0.91604 0.90448 0.90468 0.91974 0.91936 0.83782 0.84002 0.81573
0.92319 0.84347 0.90913 0.92779 0.78315 0.93587 0.93124 0.93895
0.90817 0.91606 0.89503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16
2 C -0.12 -0.95 6.30 -26.74 -0.17 -1.12 16
3 C 0.05 0.42 4.76 37.15 0.18 0.59 16
4 O -0.27 -3.50 8.23 -40.48 -0.33 -3.83 16
5 C 0.14 1.72 6.70 -38.56 -0.26 1.47 16
6 C -0.18 -1.50 9.13 -39.15 -0.36 -1.86 16
7 C -0.11 -0.78 10.10 -39.36 -0.40 -1.18 16
8 C 0.05 0.46 11.17 -17.55 -0.20 0.26 16
9 N -0.41 -5.09 6.08 -9.71 -0.06 -5.15 16
10 C 0.05 0.72 6.61 -82.88 -0.55 0.17 16
11 C 0.57 9.73 7.65 -12.33 -0.09 9.63 16
12 O -0.53 -10.15 14.61 -16.50 -0.24 -10.39 16
13 N -0.59 -9.73 2.97 -173.88 -0.52 -10.24 16
14 C 0.07 1.15 5.90 -3.71 -0.02 1.13 16
15 C -0.15 -2.81 5.66 -26.61 -0.15 -2.96 16
16 C 0.18 3.72 2.19 -67.88 -0.15 3.57 16
17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16
18 N -0.72 -18.13 4.41 -53.38 -0.24 -18.37 16
19 C -0.23 -6.46 9.93 -15.06 -0.15 -6.61 16
20 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
21 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16
22 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16
23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16
24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
27 C -0.11 -1.96 2.46 -90.50 -0.22 -2.19 16
28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
29 C -0.14 -2.36 9.03 37.15 0.34 -2.02 16
30 C 0.12 1.95 5.73 -3.71 -0.02 1.93 16
31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16
33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16
36 H 0.06 0.40 7.70 -51.93 -0.40 0.00 16
37 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16
38 H 0.14 0.80 6.46 -52.49 -0.34 0.47 16
39 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16
40 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16
41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
42 H 0.14 2.07 3.97 -87.34 -0.35 1.72 16
43 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
45 H 0.38 10.36 7.51 -40.82 -0.31 10.05 16
46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16
47 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16
48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
49 H 0.07 1.48 7.36 -51.93 -0.38 1.10 16
50 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
51 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16
LS Contribution 404.68 15.07 6.10 6.10
Total: -1.00 -33.85 404.68 -9.96 -43.81
By element:
Atomic # 1 Polarization: 16.78 SS G_CDS: -8.42 Total: 8.36 kcal
Atomic # 6 Polarization: 1.82 SS G_CDS: -1.95 Total: -0.13 kcal
Atomic # 7 Polarization: -61.35 SS G_CDS: -0.09 Total: -61.44 kcal
Atomic # 8 Polarization: -13.65 SS G_CDS: -0.57 Total: -14.22 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal
Total LS contribution 6.10 Total: 6.10 kcal
Total: -33.85 -9.96 -43.81 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001036158176.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.265 kcal
(2) G-P(sol) polarization free energy of solvation -33.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.585 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.809 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.543 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds