Wall clock time and date at job start Wed Apr 1 2020 04:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47090 * 2 1 4 4 O 1.42901 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.35649 * 116.99488 * 179.97438 * 4 3 2 6 6 C 1.39346 * 120.54365 * 0.02562 * 5 4 3 7 7 C 1.38299 * 118.44212 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.44469 * 0.02562 * 7 6 5 9 9 N 1.31379 * 121.06852 * 359.97418 * 8 7 6 10 10 C 1.32856 * 121.69324 * 359.77358 * 9 8 7 11 11 C 1.47831 * 119.78206 * 180.26631 * 10 9 8 12 12 O 1.21559 * 119.99834 * 139.90614 * 11 10 9 13 13 N 1.34773 * 120.00179 * 319.89755 * 11 10 9 14 14 C 1.46927 * 120.63064 * 3.82019 * 13 11 10 15 15 C 1.53190 * 108.77673 * 233.58536 * 14 13 11 16 16 C 1.53051 * 109.30980 * 305.36146 * 15 14 13 17 17 H 1.08992 * 109.45799 * 181.37338 * 16 15 14 18 18 N 1.46499 * 109.45694 * 301.34318 * 16 15 14 19 19 C 1.36932 * 120.00465 * 274.99808 * 18 16 15 20 20 H 1.08002 * 119.99909 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00275 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99739 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47132 * 90.00018 * 23 21 19 25 25 H 1.48501 * 109.46857 * 210.00139 * 23 21 19 26 26 H 1.48498 * 109.46977 * 329.99851 * 23 21 19 27 27 C 1.53039 * 109.53734 * 61.36590 * 16 15 14 28 28 H 1.08996 * 109.49743 * 58.58449 * 27 16 15 29 29 C 1.52995 * 109.49922 * 178.68310 * 27 16 15 30 30 C 1.46925 * 120.63362 * 183.53585 * 13 11 10 31 31 H 1.08999 * 109.46986 * 60.00145 * 1 2 3 32 32 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47573 * 300.00265 * 1 2 3 34 34 H 1.09006 * 109.47212 * 119.99188 * 2 1 3 35 35 H 1.08998 * 109.47573 * 239.99735 * 2 1 3 36 36 H 1.08996 * 109.46602 * 299.99678 * 3 2 1 37 37 H 1.09003 * 109.47035 * 59.99940 * 3 2 1 38 38 H 1.08002 * 120.77598 * 0.02562 * 6 5 4 39 39 H 1.07997 * 120.27679 * 179.97438 * 7 6 5 40 40 H 1.07999 * 119.46651 * 179.97438 * 8 7 6 41 41 H 1.09007 * 109.58487 * 353.36966 * 14 13 11 42 42 H 1.09000 * 109.58953 * 113.64997 * 14 13 11 43 43 H 1.08994 * 109.50283 * 65.30949 * 15 14 13 44 44 H 1.08994 * 109.49971 * 185.37965 * 15 14 13 45 45 H 0.97005 * 119.99761 * 95.00388 * 18 16 15 46 46 H 0.97005 * 119.99533 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.46811 * 59.99623 * 29 27 16 48 48 H 1.08999 * 109.47266 * 179.97438 * 29 27 16 49 49 H 1.09000 * 109.47212 * 300.00628 * 29 27 16 50 50 H 1.08998 * 109.58743 * 246.20647 * 30 13 11 51 51 H 1.08995 * 109.58473 * 6.62933 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6512 0.0001 6 6 3.3369 3.8270 -0.0003 7 6 4.0095 5.0354 -0.0003 8 6 5.3971 5.0438 -0.0002 9 7 6.0819 3.9225 0.0002 10 6 5.4809 2.7377 0.0051 11 6 6.2931 1.5025 0.0114 12 8 5.9536 0.5553 0.6934 13 7 7.4099 1.4264 -0.7392 14 6 7.8788 2.5903 -1.5037 15 6 8.0643 2.1769 -2.9670 16 6 8.9944 0.9634 -3.0361 17 1 9.1476 0.6822 -4.0779 18 7 10.2833 1.3012 -2.4271 19 6 11.2512 1.9205 -3.1719 20 1 11.0642 2.1605 -4.2082 21 6 12.4727 2.2401 -2.5950 22 7 13.4027 2.8359 -3.3108 23 14 12.7963 1.8245 -0.8028 24 1 13.3886 0.4659 -0.7088 25 1 13.7395 2.8166 -0.2271 26 1 11.5182 1.8606 -0.0477 27 6 8.3643 -0.2081 -2.2794 28 1 7.3940 -0.4438 -2.7164 29 6 9.2794 -1.4303 -2.3767 30 6 8.1851 0.1800 -0.8038 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 2.2574 3.7952 0.0001 39 1 3.4593 5.9647 -0.0010 40 1 5.9227 5.9872 -0.0006 41 1 7.1409 3.3902 -1.4407 42 1 8.8286 2.9366 -1.0963 43 1 7.0969 1.9187 -3.3977 44 1 8.5023 3.0038 -3.5259 45 1 10.4512 1.0859 -1.4963 46 1 14.2564 3.0588 -2.9077 47 1 10.2490 -1.1941 -1.9381 48 1 8.8304 -2.2643 -1.8373 49 1 9.4112 -1.7031 -3.4238 50 1 9.1607 0.3321 -0.3421 51 1 7.6495 -0.6109 -0.2789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036158179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:21 Heat of formation + Delta-G solvation = -15.960340 kcal Electronic energy + Delta-G solvation = -31911.191477 eV Core-core repulsion = 27811.652605 eV Total energy + Delta-G solvation = -4099.538872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.21996 -39.62935 -38.57811 -37.59922 -34.45868 -34.22907 -33.04958 -32.30206 -31.41270 -30.75478 -29.65340 -27.15328 -26.59448 -25.47328 -24.06330 -23.25300 -23.03021 -21.84193 -21.58104 -20.26544 -18.61691 -18.21458 -17.82981 -17.40403 -16.97462 -16.72185 -15.96322 -15.36391 -15.11372 -14.78264 -14.73159 -14.51719 -14.27888 -14.10537 -13.83571 -13.50596 -13.46612 -13.34292 -13.07813 -12.72660 -12.53848 -12.52757 -12.31468 -12.22382 -11.98107 -11.60825 -11.50626 -11.41620 -11.27121 -11.06250 -10.93786 -10.83795 -10.55614 -10.50949 -10.15430 -10.14846 -10.02228 -9.77925 -9.50824 -9.35058 -8.86653 -8.70324 -8.19883 -7.21612 -5.73835 -3.08255 0.55659 0.96103 2.71281 2.77930 3.14501 3.40359 3.44002 3.48864 3.56427 4.15962 4.29618 4.37275 4.45214 4.52307 4.62265 4.68086 4.76986 4.82906 4.96659 5.04292 5.08061 5.20974 5.21631 5.25348 5.38233 5.47305 5.55464 5.58743 5.64353 5.66080 5.67950 5.75055 5.79327 5.81457 5.85596 5.99984 6.05502 6.11033 6.18884 6.36531 6.44137 6.45276 6.60665 6.69161 6.75438 6.83626 6.92972 7.01049 7.56562 7.71178 8.03055 8.36624 8.45493 9.24211 9.97126 10.17476 11.44705 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.003118 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.397632 B = 8976.611367 C = 9987.158586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.054 3.946 4 O -0.284 6.284 5 C 0.132 3.868 6 C -0.175 4.175 7 C -0.112 4.112 8 C 0.056 3.944 9 N -0.409 5.409 10 C 0.057 3.943 11 C 0.575 3.425 12 O -0.533 6.533 13 N -0.586 5.586 14 C 0.108 3.892 15 C -0.151 4.151 16 C 0.185 3.815 17 H 0.059 0.941 18 N -0.743 5.743 19 C -0.237 4.237 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.877 3.123 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.111 4.111 28 H 0.071 0.929 29 C -0.138 4.138 30 C 0.118 3.882 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.167 0.833 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.360 0.640 46 H 0.258 0.742 47 H 0.064 0.936 48 H 0.046 0.954 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.921 0.412 5.963 27.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.195 6.195 5 C 0.082 3.918 6 C -0.201 4.201 7 C -0.132 4.132 8 C -0.104 4.104 9 N -0.121 5.121 10 C -0.082 4.082 11 C 0.361 3.639 12 O -0.410 6.410 13 N -0.317 5.317 14 C -0.014 4.014 15 C -0.192 4.192 16 C 0.075 3.925 17 H 0.077 0.923 18 N -0.387 5.387 19 C -0.367 4.367 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.708 3.292 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.131 4.131 28 H 0.089 0.911 29 C -0.195 4.195 30 C -0.004 4.004 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.184 0.816 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.194 0.806 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.087 0.913 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -25.958 -0.224 6.137 26.675 hybrid contribution -0.679 0.262 1.221 1.421 sum -26.637 0.038 7.358 27.635 Atomic orbital electron populations 1.21690 0.94182 1.02664 1.02050 1.21476 0.95836 0.94504 1.04329 1.23012 0.78302 0.99549 1.01312 1.86264 1.21193 1.25174 1.86838 1.19892 0.92059 0.85567 0.94286 1.21699 1.00891 0.91830 1.05702 1.22175 0.95763 0.98329 0.96929 1.22831 0.91398 0.96634 0.99540 1.67902 1.39063 0.97259 1.07899 1.20614 0.88554 0.93153 1.05884 1.17594 0.80313 0.85677 0.80286 1.90770 1.70436 1.37723 1.42023 1.47973 1.23963 1.13965 1.45814 1.22092 1.01211 0.86862 0.91225 1.22540 0.99201 1.01738 0.95759 1.20182 0.85472 0.90593 0.96229 0.92324 1.42837 1.12364 1.72626 1.10848 1.19052 0.92028 1.30057 0.95580 0.89217 1.24621 0.96393 1.00810 0.97153 1.69693 1.06095 1.46966 1.35526 0.86666 0.77692 0.77961 0.86905 1.21125 1.21817 1.20298 1.21834 0.99328 0.96735 0.95225 0.91068 1.21672 0.99989 0.95891 1.01988 1.21766 0.95564 0.85917 0.97133 0.92417 0.91589 0.92417 0.90419 0.90574 0.91893 0.91863 0.83845 0.84006 0.81618 0.88673 0.90215 0.93395 0.90384 0.80570 0.93157 0.91690 0.93520 0.92321 0.91338 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.94 6.30 -26.73 -0.17 -1.11 16 3 C 0.05 0.45 4.76 37.16 0.18 0.62 16 4 O -0.28 -3.73 8.91 -34.50 -0.31 -4.04 16 5 C 0.13 1.72 6.67 -38.55 -0.26 1.46 16 6 C -0.17 -1.60 9.13 -39.15 -0.36 -1.96 16 7 C -0.11 -0.91 10.10 -39.37 -0.40 -1.30 16 8 C 0.06 0.58 11.17 -17.55 -0.20 0.38 16 9 N -0.41 -5.83 7.27 -9.71 -0.07 -5.90 16 10 C 0.06 0.88 6.01 -82.88 -0.50 0.38 16 11 C 0.58 10.40 7.27 -12.34 -0.09 10.31 16 12 O -0.53 -10.75 15.56 -10.54 -0.16 -10.91 16 13 N -0.59 -10.38 2.97 -173.62 -0.51 -10.90 16 14 C 0.11 1.90 5.76 -3.71 -0.02 1.88 16 15 C -0.15 -2.64 5.78 -26.61 -0.15 -2.80 16 16 C 0.18 3.49 2.53 -67.88 -0.17 3.32 16 17 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 18 N -0.74 -16.85 3.45 -53.38 -0.18 -17.04 16 19 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.06 13.97 55.49 0.78 -28.29 16 23 Si 0.88 22.19 27.74 -169.99 -4.71 17.48 16 24 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 27 C -0.11 -1.83 2.69 -90.28 -0.24 -2.07 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 C -0.14 -2.14 9.05 37.16 0.34 -1.81 16 30 C 0.12 2.06 5.43 -3.49 -0.02 2.04 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.42 7.70 -51.93 -0.40 0.02 16 37 H 0.06 0.43 7.70 -51.93 -0.40 0.03 16 38 H 0.14 0.88 6.46 -52.49 -0.34 0.54 16 39 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.10 1.56 4.57 -51.93 -0.24 1.32 16 42 H 0.08 1.60 7.74 -51.93 -0.40 1.19 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.36 8.27 3.78 -40.82 -0.15 8.11 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.06 1.13 7.54 -51.93 -0.39 0.74 16 48 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 1.27 6.63 -51.93 -0.34 0.93 16 51 H 0.09 1.49 7.02 -51.93 -0.36 1.13 16 LS Contribution 400.21 15.07 6.03 6.03 Total: -1.00 -34.12 400.21 -9.21 -43.33 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -8.12 Total: 7.83 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -1.94 Total: 2.40 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: 0.01 Total: -62.12 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.47 Total: -14.95 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.48 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.12 -9.21 -43.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036158179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.371 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds