Wall clock time and date at job start Wed Apr 1 2020 04:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.47090 * 2 1 4 4 O 1.42901 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.35649 * 116.99488 * 179.97438 * 4 3 2 6 6 C 1.39346 * 120.54365 * 0.02562 * 5 4 3 7 7 C 1.38299 * 118.44212 * 179.97438 * 6 5 4 8 8 C 1.38763 * 119.44469 * 0.02562 * 7 6 5 9 9 N 1.31379 * 121.06852 * 359.97418 * 8 7 6 10 10 C 1.32856 * 121.69324 * 359.77358 * 9 8 7 11 11 C 1.47831 * 119.78206 * 180.26631 * 10 9 8 12 12 O 1.21559 * 119.99834 * 139.90614 * 11 10 9 13 13 N 1.34773 * 120.00179 * 319.89755 * 11 10 9 14 14 C 1.46927 * 120.63064 * 3.82019 * 13 11 10 15 15 C 1.53190 * 108.77673 * 233.58536 * 14 13 11 16 16 C 1.53051 * 109.30980 * 305.36146 * 15 14 13 17 17 H 1.08992 * 109.45799 * 181.37338 * 16 15 14 18 18 N 1.46499 * 109.45694 * 301.34318 * 16 15 14 19 19 C 1.36932 * 120.00465 * 274.99808 * 18 16 15 20 20 H 1.08002 * 119.99909 * 0.02562 * 19 18 16 21 21 C 1.38815 * 120.00275 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99739 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99793 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47132 * 90.00018 * 23 21 19 25 25 H 1.48501 * 109.46857 * 210.00139 * 23 21 19 26 26 H 1.48498 * 109.46977 * 329.99851 * 23 21 19 27 27 C 1.53039 * 109.53734 * 61.36590 * 16 15 14 28 28 H 1.08996 * 109.49743 * 58.58449 * 27 16 15 29 29 C 1.52995 * 109.49922 * 178.68310 * 27 16 15 30 30 C 1.46925 * 120.63362 * 183.53585 * 13 11 10 31 31 H 1.08999 * 109.46986 * 60.00145 * 1 2 3 32 32 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47573 * 300.00265 * 1 2 3 34 34 H 1.09006 * 109.47212 * 119.99188 * 2 1 3 35 35 H 1.08998 * 109.47573 * 239.99735 * 2 1 3 36 36 H 1.08996 * 109.46602 * 299.99678 * 3 2 1 37 37 H 1.09003 * 109.47035 * 59.99940 * 3 2 1 38 38 H 1.08002 * 120.77598 * 0.02562 * 6 5 4 39 39 H 1.07997 * 120.27679 * 179.97438 * 7 6 5 40 40 H 1.07999 * 119.46651 * 179.97438 * 8 7 6 41 41 H 1.09007 * 109.58487 * 353.36966 * 14 13 11 42 42 H 1.09000 * 109.58953 * 113.64997 * 14 13 11 43 43 H 1.08994 * 109.50283 * 65.30949 * 15 14 13 44 44 H 1.08994 * 109.49971 * 185.37965 * 15 14 13 45 45 H 0.97005 * 119.99761 * 95.00388 * 18 16 15 46 46 H 0.97005 * 119.99533 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.46811 * 59.99623 * 29 27 16 48 48 H 1.08999 * 109.47266 * 179.97438 * 29 27 16 49 49 H 1.09000 * 109.47212 * 300.00628 * 29 27 16 50 50 H 1.08998 * 109.58743 * 246.20647 * 30 13 11 51 51 H 1.08995 * 109.58473 * 6.62933 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0848 2.6512 0.0001 6 6 3.3369 3.8270 -0.0003 7 6 4.0095 5.0354 -0.0003 8 6 5.3971 5.0438 -0.0002 9 7 6.0819 3.9225 0.0002 10 6 5.4809 2.7377 0.0051 11 6 6.2931 1.5025 0.0114 12 8 5.9536 0.5553 0.6934 13 7 7.4099 1.4264 -0.7392 14 6 7.8788 2.5903 -1.5037 15 6 8.0643 2.1769 -2.9670 16 6 8.9944 0.9634 -3.0361 17 1 9.1476 0.6822 -4.0779 18 7 10.2833 1.3012 -2.4271 19 6 11.2512 1.9205 -3.1719 20 1 11.0642 2.1605 -4.2082 21 6 12.4727 2.2401 -2.5950 22 7 13.4027 2.8359 -3.3108 23 14 12.7963 1.8245 -0.8028 24 1 13.3886 0.4659 -0.7088 25 1 13.7395 2.8166 -0.2271 26 1 11.5182 1.8606 -0.0477 27 6 8.3643 -0.2081 -2.2794 28 1 7.3940 -0.4438 -2.7164 29 6 9.2794 -1.4303 -2.3767 30 6 8.1851 0.1800 -0.8038 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9563 -0.8900 37 1 1.6766 1.9564 0.8900 38 1 2.2574 3.7952 0.0001 39 1 3.4593 5.9647 -0.0010 40 1 5.9227 5.9872 -0.0006 41 1 7.1409 3.3902 -1.4407 42 1 8.8286 2.9366 -1.0963 43 1 7.0969 1.9187 -3.3977 44 1 8.5023 3.0038 -3.5259 45 1 10.4512 1.0859 -1.4963 46 1 14.2564 3.0588 -2.9077 47 1 10.2490 -1.1941 -1.9381 48 1 8.8304 -2.2643 -1.8373 49 1 9.4112 -1.7031 -3.4238 50 1 9.1607 0.3321 -0.3421 51 1 7.6495 -0.6109 -0.2789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036158179.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:20 Heat of formation + Delta-G solvation = -36.600329 kcal Electronic energy + Delta-G solvation = -31912.086494 eV Core-core repulsion = 27811.652605 eV Total energy + Delta-G solvation = -4100.433889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.18726 -40.87409 -39.42902 -39.04727 -35.96916 -34.93855 -34.59423 -33.38361 -33.05280 -31.64103 -31.43403 -27.99228 -27.59466 -26.92357 -25.30312 -24.75729 -24.04199 -23.04337 -22.49749 -21.42665 -20.03698 -19.77502 -19.12931 -18.57660 -17.97304 -17.50802 -17.12739 -16.70492 -16.42715 -16.12987 -15.97833 -15.49509 -15.43830 -15.25520 -15.09230 -14.91814 -14.65870 -14.48371 -14.32827 -14.20484 -13.72701 -13.54115 -13.32838 -13.07885 -13.00663 -12.97372 -12.92716 -12.68328 -12.55844 -12.45950 -12.09451 -12.00466 -11.95612 -11.91894 -11.69101 -11.62965 -11.36052 -11.23598 -10.97895 -10.81703 -10.36445 -9.74354 -9.48663 -9.23172 -7.98438 -5.28719 -0.30279 0.18744 1.36732 1.37628 1.43787 1.58225 1.87525 2.01197 2.48846 2.66687 3.11773 3.33658 3.55029 3.61049 3.66117 3.74478 3.90130 3.93705 3.96785 3.98989 4.03977 4.08425 4.24338 4.27939 4.33306 4.39410 4.49794 4.51667 4.52259 4.58698 4.68802 4.75157 4.80076 4.88151 4.98891 4.99695 5.00701 5.09224 5.11849 5.15200 5.17557 5.23350 5.24317 5.30846 5.41763 5.45645 5.60596 5.83637 6.17609 6.25696 6.34016 6.72607 7.05734 7.11921 7.88830 8.07602 9.23458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.003118 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.397632 B = 8976.611367 C = 9987.158586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.046 3.954 4 O -0.316 6.316 5 C 0.124 3.876 6 C -0.166 4.166 7 C -0.087 4.087 8 C 0.049 3.951 9 N -0.443 5.443 10 C 0.012 3.988 11 C 0.571 3.429 12 O -0.565 6.565 13 N -0.590 5.590 14 C 0.119 3.881 15 C -0.143 4.143 16 C 0.179 3.821 17 H 0.054 0.946 18 N -0.742 5.742 19 C -0.211 4.211 20 H 0.064 0.936 21 C -0.058 4.058 22 N -0.983 5.983 23 Si 0.938 3.062 24 H -0.280 1.280 25 H -0.298 1.298 26 H -0.264 1.264 27 C -0.099 4.099 28 H 0.089 0.911 29 C -0.134 4.134 30 C 0.118 3.882 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.180 0.820 39 H 0.190 0.810 40 H 0.192 0.808 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.361 0.639 46 H 0.255 0.745 47 H 0.043 0.957 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.710 1.432 6.695 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C -0.028 4.028 4 O -0.228 6.228 5 C 0.073 3.927 6 C -0.192 4.192 7 C -0.106 4.106 8 C -0.112 4.112 9 N -0.155 5.155 10 C -0.124 4.124 11 C 0.359 3.641 12 O -0.444 6.444 13 N -0.321 5.321 14 C -0.003 4.003 15 C -0.183 4.183 16 C 0.071 3.929 17 H 0.072 0.928 18 N -0.385 5.385 19 C -0.342 4.342 20 H 0.082 0.918 21 C -0.249 4.249 22 N -0.634 5.634 23 Si 0.767 3.233 24 H -0.206 1.206 25 H -0.225 1.225 26 H -0.189 1.189 27 C -0.119 4.119 28 H 0.107 0.893 29 C -0.192 4.192 30 C -0.004 4.004 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.198 0.802 39 H 0.207 0.793 40 H 0.209 0.791 41 H 0.129 0.871 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.195 0.805 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -29.806 0.757 6.870 30.597 hybrid contribution 0.313 0.019 0.951 1.002 sum -29.493 0.776 7.821 30.522 Atomic orbital electron populations 1.21659 0.91995 1.03226 1.03064 1.21502 0.97619 0.94220 1.02897 1.23318 0.76208 1.00151 1.03133 1.86230 1.23631 1.25989 1.86900 1.20048 0.91523 0.86825 0.94270 1.22145 1.02505 0.90615 1.03965 1.22688 0.94895 0.99803 0.93251 1.23433 0.92965 0.96270 0.98530 1.67727 1.40544 0.97901 1.09322 1.20236 0.89428 0.92454 1.10317 1.18131 0.80122 0.86572 0.79226 1.90723 1.71217 1.39362 1.43145 1.48027 1.24243 1.13807 1.45985 1.21940 1.00254 0.87456 0.90697 1.22410 0.99695 1.00367 0.95864 1.20402 0.84222 0.92257 0.96064 0.92807 1.42808 1.13006 1.72133 1.10581 1.19009 0.92517 1.28034 0.94637 0.91848 1.25255 0.96592 1.02012 1.01053 1.69847 1.06676 1.49511 1.37372 0.85669 0.77743 0.77477 0.82401 1.20621 1.22545 1.18903 1.21742 1.00042 0.95874 0.94249 0.89281 1.21648 0.98793 0.96241 1.02528 1.21730 0.94851 0.86272 0.97551 0.91289 0.91343 0.91435 0.92125 0.91831 0.89727 0.90080 0.80244 0.79284 0.79130 0.87089 0.93173 0.91123 0.91732 0.80503 0.93596 0.93799 0.91138 0.91779 0.92900 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.12 -1.77 6.30 30.60 0.19 -1.58 16 3 C 0.05 0.66 4.76 71.99 0.34 1.01 16 4 O -0.32 -8.00 8.91 -74.48 -0.66 -8.67 16 5 C 0.12 3.01 6.67 22.94 0.15 3.16 16 6 C -0.17 -2.37 9.13 22.55 0.21 -2.16 16 7 C -0.09 -0.99 10.10 22.41 0.23 -0.76 16 8 C 0.05 0.87 11.17 84.89 0.95 1.81 16 9 N -0.44 -12.13 7.27 -184.63 -1.34 -13.48 16 10 C 0.01 0.36 6.01 41.93 0.25 0.61 16 11 C 0.57 20.95 7.27 86.78 0.63 21.58 16 12 O -0.57 -23.41 15.56 11.26 0.18 -23.23 16 13 N -0.59 -21.07 2.97 -821.49 -2.44 -23.51 16 14 C 0.12 4.19 5.76 86.36 0.50 4.69 16 15 C -0.14 -4.95 5.78 30.67 0.18 -4.77 16 16 C 0.18 6.72 2.53 45.02 0.11 6.84 16 17 H 0.05 2.09 8.08 -2.39 -0.02 2.08 16 18 N -0.74 -34.00 3.45 -322.81 -1.11 -35.11 16 19 C -0.21 -11.73 10.41 84.04 0.87 -10.85 16 20 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 21 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 22 N -0.98 -62.95 13.97 21.65 0.30 -62.64 16 23 Si 0.94 46.93 27.74 68.60 1.90 48.83 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 26 H -0.26 -12.44 6.52 99.48 0.65 -11.79 16 27 C -0.10 -3.19 2.69 -10.57 -0.03 -3.22 16 28 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 29 C -0.13 -4.05 9.05 71.98 0.65 -3.39 16 30 C 0.12 4.12 5.43 86.51 0.47 4.59 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.52 8.14 -2.38 -0.02 0.51 16 33 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.83 7.70 -2.39 -0.02 0.81 16 37 H 0.08 0.85 7.70 -2.39 -0.02 0.83 16 38 H 0.18 1.18 6.46 -2.91 -0.02 1.16 16 39 H 0.19 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.19 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.11 3.62 4.57 -2.38 -0.01 3.60 16 42 H 0.05 2.05 7.74 -2.39 -0.02 2.03 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.36 16.64 3.78 -92.70 -0.35 16.29 16 46 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 47 H 0.04 1.50 7.54 -2.38 -0.02 1.49 16 48 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.05 1.99 6.63 -2.39 -0.02 1.97 16 51 H 0.09 3.08 7.02 -2.39 -0.02 3.06 16 Total: -1.00 -78.46 400.21 4.24 -74.22 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: 0.52 Total: 29.39 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.89 Total: 14.20 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -4.59 Total: -134.74 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.49 Total: -31.90 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 1.90 Total: 48.83 kcal Total: -78.46 4.24 -74.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036158179.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.622 kcal (2) G-P(sol) polarization free energy of solvation -78.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds