Wall clock time and date at job start Wed Apr 1 2020 04:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.46910 * 2 1 4 4 O 1.42900 * 109.46925 * 120.00194 * 2 1 3 5 5 C 1.35499 * 116.99773 * 150.00142 * 4 2 1 6 6 C 1.39170 * 119.52296 * 179.97438 * 5 4 2 7 7 C 1.37953 * 119.26307 * 179.74696 * 6 5 4 8 8 C 1.40283 * 118.35721 * 0.53050 * 7 6 5 9 9 C 1.47615 * 120.49947 * 179.73555 * 8 7 6 10 10 O 1.21578 * 120.00002 * 359.73036 * 9 8 7 11 11 N 1.34770 * 119.99843 * 179.73130 * 9 8 7 12 12 C 1.46503 * 119.99953 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.50904 * 325.05297 * 12 11 9 14 14 C 1.52567 * 109.49043 * 204.99535 * 12 11 9 15 15 C 1.47091 * 114.32574 * 155.01660 * 14 12 11 16 16 C 1.54864 * 110.32048 * 62.80715 * 15 14 12 17 17 N 1.44577 * 109.59997 * 288.73152 * 16 15 14 18 18 C 1.36935 * 118.64603 * 270.70802 * 17 16 15 19 19 H 1.08008 * 119.99845 * 27.24308 * 18 17 16 20 20 C 1.38806 * 120.00218 * 206.97284 * 18 17 16 21 21 N 1.31621 * 119.99954 * 17.02219 * 20 18 17 22 22 Si 1.86800 * 120.00044 * 197.02151 * 20 18 17 23 23 H 1.48498 * 109.47477 * 59.99875 * 22 20 18 24 24 H 1.48507 * 109.47272 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47079 * 299.99640 * 22 20 18 26 26 C 1.47601 * 122.71289 * 90.98386 * 17 16 15 27 27 C 1.50883 * 109.48914 * 85.11101 * 12 11 9 28 28 C 1.39530 * 119.00117 * 359.47493 * 8 7 6 29 29 N 1.31663 * 120.62448 * 0.26232 * 28 8 7 30 30 H 1.08990 * 109.47263 * 300.00139 * 1 2 3 31 31 H 1.09003 * 109.47114 * 60.00298 * 1 2 3 32 32 H 1.09007 * 109.47096 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47063 * 239.99605 * 2 1 3 34 34 H 1.09000 * 109.47183 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46989 * 299.99778 * 3 2 1 36 36 H 1.09003 * 109.47580 * 59.99922 * 3 2 1 37 37 H 1.08006 * 120.36870 * 0.02562 * 6 5 4 38 38 H 1.08005 * 120.82488 * 180.27861 * 7 6 5 39 39 H 0.96997 * 120.00368 * 359.97438 * 11 9 8 40 40 H 1.09007 * 108.51359 * 33.76710 * 14 12 11 41 41 H 1.08994 * 108.39502 * 276.19010 * 14 12 11 42 42 H 1.08993 * 109.33320 * 302.54386 * 15 14 12 43 43 H 1.08999 * 109.19157 * 182.97275 * 15 14 12 44 44 H 1.09003 * 109.45179 * 168.69487 * 16 15 14 45 45 H 1.09003 * 109.45229 * 48.76809 * 16 15 14 46 46 H 0.97003 * 119.99916 * 180.02562 * 21 20 18 47 47 H 1.08998 * 108.95194 * 78.30099 * 26 17 16 48 48 H 1.09003 * 108.94596 * 196.92867 * 26 17 16 49 49 H 1.08992 * 109.36597 * 332.04252 * 27 12 11 50 50 H 1.09004 * 109.36465 * 91.66700 * 27 12 11 51 51 H 1.07994 * 119.68501 * 180.25181 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1972 -1.3122 1.0654 6 6 3.7109 -1.9849 2.1701 7 6 4.9212 -2.6375 2.0593 8 6 5.5957 -2.5865 0.8303 9 6 6.8967 -3.2631 0.6611 10 8 7.3938 -3.8664 1.5923 11 7 7.5334 -3.2122 -0.5256 12 6 8.8243 -3.8842 -0.6938 13 1 9.3915 -3.8205 0.2349 14 6 9.6073 -3.2091 -1.8158 15 6 11.0662 -3.3686 -1.7176 16 6 11.4522 -4.8644 -1.8271 17 7 11.0516 -5.5580 -0.6235 18 6 11.9332 -5.6206 0.4224 19 1 12.6757 -4.8466 0.5499 20 6 11.8691 -6.6757 1.3221 21 7 11.2116 -7.7712 1.0058 22 14 12.7159 -6.5409 2.9816 23 1 12.1500 -5.3928 3.7344 24 1 12.4997 -7.7927 3.7509 25 1 14.1718 -6.3305 2.7788 26 6 9.7338 -6.2066 -0.4777 27 6 8.5953 -5.3334 -1.0455 28 6 5.0158 -1.8912 -0.2313 29 7 3.8555 -1.2867 -0.0831 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9562 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1659 -1.9996 3.1024 38 1 5.3411 -3.1711 2.8992 39 1 7.1366 -2.7312 -1.2686 40 1 9.3743 -2.1442 -1.8083 41 1 9.2765 -3.6277 -2.7662 42 1 11.4084 -2.9769 -0.7597 43 1 11.5426 -2.8131 -2.5254 44 1 12.5312 -4.9524 -1.9546 45 1 10.9482 -5.3074 -2.6861 46 1 11.1665 -8.5084 1.6346 47 1 9.7488 -7.1609 -1.0042 48 1 9.5450 -6.3907 0.5799 49 1 7.6445 -5.6614 -0.6257 50 1 8.5664 -5.4420 -2.1297 51 1 5.5235 -1.8482 -1.1834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052431111.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:55 Heat of formation + Delta-G solvation = -18.600734 kcal Electronic energy + Delta-G solvation = -30827.427900 eV Core-core repulsion = 26727.774532 eV Total energy + Delta-G solvation = -4099.653368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11455 -39.74615 -38.41140 -37.41487 -34.71626 -33.71119 -32.90062 -32.73648 -31.35959 -30.67742 -29.77916 -27.67834 -26.05285 -24.75976 -24.29113 -23.59044 -23.16395 -21.49790 -20.58887 -20.15228 -19.21343 -18.88164 -17.60062 -17.21537 -16.52834 -16.07834 -15.72823 -15.19754 -15.08285 -14.81742 -14.61118 -14.51364 -14.17937 -14.05780 -13.61658 -13.46079 -13.28057 -13.17097 -12.92937 -12.77705 -12.71737 -12.68626 -12.40005 -12.30570 -11.89962 -11.60180 -11.32893 -11.13694 -11.05465 -10.85683 -10.70649 -10.41744 -10.21316 -10.19795 -10.11296 -10.03500 -9.91114 -9.67223 -9.53975 -9.50905 -8.88193 -8.65912 -8.28396 -6.58482 -5.69478 -3.13050 0.54726 0.93658 2.62703 2.91589 3.31993 3.46176 3.52055 3.55069 3.72160 3.84866 4.44588 4.53855 4.56923 4.59504 4.64505 4.78109 4.82462 4.93024 5.13728 5.16625 5.28249 5.30715 5.33101 5.36620 5.40811 5.51877 5.58049 5.59789 5.71966 5.76143 5.78661 5.89819 6.02789 6.09218 6.13190 6.23131 6.30845 6.46877 6.52154 6.61888 6.70090 6.79021 6.88439 6.89924 7.02342 7.09476 7.44029 7.49565 7.73114 7.78665 7.91921 8.44559 8.56702 9.32654 9.99939 10.44568 11.38094 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002290 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.272038 B =12225.227709 C =13115.564788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.169 4.169 4 O -0.299 6.299 5 C 0.340 3.660 6 C -0.198 4.198 7 C 0.016 3.984 8 C -0.218 4.218 9 C 0.559 3.441 10 O -0.521 6.521 11 N -0.723 5.723 12 C 0.154 3.846 13 H 0.105 0.895 14 C -0.107 4.107 15 C -0.145 4.145 16 C 0.156 3.844 17 N -0.590 5.590 18 C -0.260 4.260 19 H 0.064 0.936 20 C 0.008 3.992 21 N -0.902 5.902 22 Si 0.898 3.102 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.183 3.817 27 C -0.147 4.147 28 C 0.175 3.825 29 N -0.544 5.544 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.389 0.611 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.046 0.954 45 H 0.032 0.968 46 H 0.253 0.747 47 H 0.026 0.974 48 H 0.076 0.924 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 16.313 -5.485 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.206 6.206 5 C 0.161 3.839 6 C -0.218 4.218 7 C -0.009 4.009 8 C -0.224 4.224 9 C 0.344 3.656 10 O -0.397 6.397 11 N -0.374 5.374 12 C 0.052 3.948 13 H 0.123 0.877 14 C -0.145 4.145 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.312 5.312 18 C -0.390 4.390 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.546 5.546 22 Si 0.728 3.272 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.057 3.943 27 C -0.187 4.187 28 C 0.018 3.982 29 N -0.268 5.268 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -19.876 16.172 -5.203 26.147 hybrid contribution 0.507 -0.065 0.959 1.086 sum -19.368 16.107 -4.245 25.546 Atomic orbital electron populations 1.21916 0.92762 1.03095 1.03050 1.22404 0.94525 0.92828 0.87914 1.22219 1.02240 0.95501 1.02662 1.86277 1.31484 1.63947 1.38888 1.20018 0.85587 0.88579 0.89670 1.21061 0.98213 1.03243 0.99313 1.21592 0.91028 0.91447 0.96865 1.20974 0.98717 1.06186 0.96514 1.17855 0.83939 0.80507 0.83258 1.90874 1.66551 1.42422 1.39900 1.46239 1.23221 1.55359 1.12556 1.20564 0.81628 0.91447 1.01204 0.87739 1.20577 0.97237 0.99007 0.97640 1.21446 0.94322 1.01550 1.01302 1.20695 0.97719 0.89520 0.89256 1.43663 1.12376 1.63027 1.12113 1.19105 1.12508 1.04019 1.03363 0.91862 1.25005 0.99578 0.94734 0.99790 1.70051 1.45785 1.03992 1.34787 0.86435 0.79151 0.76937 0.84638 1.20941 1.21713 1.21009 1.20999 0.81121 0.91165 1.00995 1.22499 1.00993 0.95389 0.99822 1.22593 0.88984 0.88888 0.97783 1.67225 1.10624 1.24427 1.24482 0.91600 0.90400 0.91754 0.89046 0.91897 0.90991 0.91965 0.83477 0.82663 0.77703 0.93385 0.92754 0.91892 0.93013 0.93588 0.95005 0.93678 0.95561 0.90555 0.92597 0.93540 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.56 37.16 0.36 -0.52 16 2 C 0.08 0.63 3.10 -26.73 -0.08 0.55 16 3 C -0.17 -1.18 9.53 37.15 0.35 -0.83 16 4 O -0.30 -3.04 9.75 -18.19 -0.18 -3.22 16 5 C 0.34 3.74 7.46 -16.96 -0.13 3.62 16 6 C -0.20 -2.06 10.02 -39.34 -0.39 -2.45 16 7 C 0.02 0.19 9.70 -38.92 -0.38 -0.18 16 8 C -0.22 -2.75 5.89 -104.82 -0.62 -3.37 16 9 C 0.56 8.91 7.59 -12.44 -0.09 8.81 16 10 O -0.52 -10.85 16.08 5.30 0.09 -10.76 16 11 N -0.72 -10.23 4.88 -56.08 -0.27 -10.50 16 12 C 0.15 2.71 2.07 -69.21 -0.14 2.56 16 13 H 0.10 2.33 6.92 -51.93 -0.36 1.97 16 14 C -0.11 -1.60 4.70 -29.79 -0.14 -1.74 16 15 C -0.15 -2.45 5.74 -28.58 -0.16 -2.62 16 16 C 0.16 3.18 5.65 -4.09 -0.02 3.15 16 17 N -0.59 -14.56 2.26 -171.87 -0.39 -14.95 16 18 C -0.26 -7.17 9.43 -15.06 -0.14 -7.32 16 19 H 0.06 1.72 7.88 -52.48 -0.41 1.30 16 20 C 0.01 0.22 4.83 -17.43 -0.08 0.14 16 21 N -0.90 -26.75 11.12 55.49 0.62 -26.14 16 22 Si 0.90 22.53 29.59 -169.99 -5.03 17.50 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.18 4.45 4.71 -2.76 -0.01 4.44 16 27 C -0.15 -2.82 5.39 -27.11 -0.15 -2.97 16 28 C 0.18 1.84 10.71 -17.14 -0.18 1.65 16 29 N -0.54 -5.94 8.61 -12.97 -0.11 -6.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 33 H 0.09 0.78 6.97 -51.93 -0.36 0.42 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 38 H 0.16 1.82 7.73 -52.48 -0.41 1.41 16 39 H 0.39 4.02 6.65 -40.82 -0.27 3.75 16 40 H 0.05 0.62 8.04 -51.92 -0.42 0.20 16 41 H 0.05 0.75 7.35 -51.93 -0.38 0.37 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 45 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 48 H 0.08 2.15 6.39 -51.93 -0.33 1.82 16 49 H 0.06 1.08 7.85 -51.93 -0.41 0.68 16 50 H 0.05 0.81 7.31 -51.93 -0.38 0.43 16 51 H 0.16 1.23 6.41 -52.49 -0.34 0.89 16 LS Contribution 404.78 15.07 6.10 6.10 Total: -1.00 -32.91 404.78 -9.46 -42.37 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -8.26 Total: 2.73 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.02 Total: 2.92 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.16 Total: -57.64 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.09 Total: -13.98 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.91 -9.46 -42.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052431111.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.772 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds