Wall clock time and date at job start Wed Apr 1 2020 04:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52992 * 109.46910 * 2 1 4 4 O 1.42900 * 109.46925 * 120.00194 * 2 1 3 5 5 C 1.35499 * 116.99773 * 150.00142 * 4 2 1 6 6 C 1.39170 * 119.52296 * 179.97438 * 5 4 2 7 7 C 1.37953 * 119.26307 * 179.74696 * 6 5 4 8 8 C 1.40283 * 118.35721 * 0.53050 * 7 6 5 9 9 C 1.47615 * 120.49947 * 179.73555 * 8 7 6 10 10 O 1.21578 * 120.00002 * 359.73036 * 9 8 7 11 11 N 1.34770 * 119.99843 * 179.73130 * 9 8 7 12 12 C 1.46503 * 119.99953 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.50904 * 325.05297 * 12 11 9 14 14 C 1.52567 * 109.49043 * 204.99535 * 12 11 9 15 15 C 1.47091 * 114.32574 * 155.01660 * 14 12 11 16 16 C 1.54864 * 110.32048 * 62.80715 * 15 14 12 17 17 N 1.44577 * 109.59997 * 288.73152 * 16 15 14 18 18 C 1.36935 * 118.64603 * 270.70802 * 17 16 15 19 19 H 1.08008 * 119.99845 * 27.24308 * 18 17 16 20 20 C 1.38806 * 120.00218 * 206.97284 * 18 17 16 21 21 N 1.31621 * 119.99954 * 17.02219 * 20 18 17 22 22 Si 1.86800 * 120.00044 * 197.02151 * 20 18 17 23 23 H 1.48498 * 109.47477 * 59.99875 * 22 20 18 24 24 H 1.48507 * 109.47272 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47079 * 299.99640 * 22 20 18 26 26 C 1.47601 * 122.71289 * 90.98386 * 17 16 15 27 27 C 1.50883 * 109.48914 * 85.11101 * 12 11 9 28 28 C 1.39530 * 119.00117 * 359.47493 * 8 7 6 29 29 N 1.31663 * 120.62448 * 0.26232 * 28 8 7 30 30 H 1.08990 * 109.47263 * 300.00139 * 1 2 3 31 31 H 1.09003 * 109.47114 * 60.00298 * 1 2 3 32 32 H 1.09007 * 109.47096 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47063 * 239.99605 * 2 1 3 34 34 H 1.09000 * 109.47183 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46989 * 299.99778 * 3 2 1 36 36 H 1.09003 * 109.47580 * 59.99922 * 3 2 1 37 37 H 1.08006 * 120.36870 * 0.02562 * 6 5 4 38 38 H 1.08005 * 120.82488 * 180.27861 * 7 6 5 39 39 H 0.96997 * 120.00368 * 359.97438 * 11 9 8 40 40 H 1.09007 * 108.51359 * 33.76710 * 14 12 11 41 41 H 1.08994 * 108.39502 * 276.19010 * 14 12 11 42 42 H 1.08993 * 109.33320 * 302.54386 * 15 14 12 43 43 H 1.08999 * 109.19157 * 182.97275 * 15 14 12 44 44 H 1.09003 * 109.45179 * 168.69487 * 16 15 14 45 45 H 1.09003 * 109.45229 * 48.76809 * 16 15 14 46 46 H 0.97003 * 119.99916 * 180.02562 * 21 20 18 47 47 H 1.08998 * 108.95194 * 78.30099 * 26 17 16 48 48 H 1.09003 * 108.94596 * 196.92867 * 26 17 16 49 49 H 1.08992 * 109.36597 * 332.04252 * 27 12 11 50 50 H 1.09004 * 109.36465 * 91.66700 * 27 12 11 51 51 H 1.07994 * 119.68501 * 180.25181 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1972 -1.3122 1.0654 6 6 3.7109 -1.9849 2.1701 7 6 4.9212 -2.6375 2.0593 8 6 5.5957 -2.5865 0.8303 9 6 6.8967 -3.2631 0.6611 10 8 7.3938 -3.8664 1.5923 11 7 7.5334 -3.2122 -0.5256 12 6 8.8243 -3.8842 -0.6938 13 1 9.3915 -3.8205 0.2349 14 6 9.6073 -3.2091 -1.8158 15 6 11.0662 -3.3686 -1.7176 16 6 11.4522 -4.8644 -1.8271 17 7 11.0516 -5.5580 -0.6235 18 6 11.9332 -5.6206 0.4224 19 1 12.6757 -4.8466 0.5499 20 6 11.8691 -6.6757 1.3221 21 7 11.2116 -7.7712 1.0058 22 14 12.7159 -6.5409 2.9816 23 1 12.1500 -5.3928 3.7344 24 1 12.4997 -7.7927 3.7509 25 1 14.1718 -6.3305 2.7788 26 6 9.7338 -6.2066 -0.4777 27 6 8.5953 -5.3334 -1.0455 28 6 5.0158 -1.8912 -0.2313 29 7 3.8555 -1.2867 -0.0831 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9562 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1659 -1.9996 3.1024 38 1 5.3411 -3.1711 2.8992 39 1 7.1366 -2.7312 -1.2686 40 1 9.3743 -2.1442 -1.8083 41 1 9.2765 -3.6277 -2.7662 42 1 11.4084 -2.9769 -0.7597 43 1 11.5426 -2.8131 -2.5254 44 1 12.5312 -4.9524 -1.9546 45 1 10.9482 -5.3074 -2.6861 46 1 11.1665 -8.5084 1.6346 47 1 9.7488 -7.1609 -1.0042 48 1 9.5450 -6.3907 0.5799 49 1 7.6445 -5.6614 -0.6257 50 1 8.5664 -5.4420 -2.1297 51 1 5.5235 -1.8482 -1.1834 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052431111.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:55 Heat of formation + Delta-G solvation = -40.505154 kcal Electronic energy + Delta-G solvation = -30828.377747 eV Core-core repulsion = 26727.774532 eV Total energy + Delta-G solvation = -4100.603215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01470 -40.93552 -39.48810 -38.76260 -36.35271 -34.61813 -34.25152 -33.64408 -32.76891 -32.47377 -30.97766 -28.17171 -27.82113 -26.06292 -25.21850 -25.10013 -24.68129 -22.23311 -21.85196 -21.47753 -20.98098 -19.66686 -18.73286 -18.55333 -18.07604 -17.18086 -16.84857 -16.66307 -16.20901 -16.06772 -15.85298 -15.57714 -15.46936 -15.40295 -14.84155 -14.81182 -14.52109 -14.19900 -14.06636 -14.00887 -13.77581 -13.60427 -13.29883 -13.23746 -13.16118 -13.00650 -12.86330 -12.71656 -12.52277 -12.15307 -12.01999 -11.92921 -11.77410 -11.72956 -11.49656 -11.38648 -11.32464 -11.19189 -11.09576 -10.63107 -10.41983 -10.13587 -9.62137 -8.62480 -7.84916 -5.29640 -0.38299 0.08031 1.40973 1.46633 1.51050 1.80907 1.88815 2.12634 2.51323 2.73999 3.06882 3.29294 3.61283 3.70891 3.76360 3.83634 3.89389 3.93050 4.01924 4.05104 4.11801 4.28114 4.40979 4.48837 4.50148 4.51065 4.63003 4.71335 4.72271 4.83323 4.85352 4.86161 4.92370 4.96047 4.99864 5.07805 5.18787 5.20743 5.24999 5.26944 5.27833 5.29903 5.38159 5.53270 5.60263 5.65210 5.72451 5.78554 6.13281 6.42790 6.55675 6.61401 7.20158 7.27199 7.98714 8.36590 9.19810 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002290 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.272038 B =12225.227709 C =13115.564788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 C -0.165 4.165 4 O -0.305 6.305 5 C 0.339 3.661 6 C -0.196 4.196 7 C 0.009 3.991 8 C -0.234 4.234 9 C 0.559 3.441 10 O -0.582 6.582 11 N -0.704 5.704 12 C 0.163 3.837 13 H 0.051 0.949 14 C -0.104 4.104 15 C -0.132 4.132 16 C 0.147 3.853 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.064 0.936 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.955 3.045 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.195 3.805 27 C -0.131 4.131 28 C 0.190 3.810 29 N -0.546 5.546 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.166 0.834 38 H 0.147 0.853 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.090 0.910 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.246 0.754 47 H -0.003 1.003 48 H 0.025 0.975 49 H 0.048 0.952 50 H 0.077 0.923 51 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.213 19.314 -7.909 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.222 4.222 4 O -0.212 6.212 5 C 0.160 3.840 6 C -0.217 4.217 7 C -0.017 4.017 8 C -0.240 4.240 9 C 0.347 3.653 10 O -0.463 6.463 11 N -0.356 5.356 12 C 0.059 3.941 13 H 0.069 0.931 14 C -0.142 4.142 15 C -0.173 4.173 16 C 0.021 3.979 17 N -0.326 5.326 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.784 3.216 23 H -0.215 1.215 24 H -0.221 1.221 25 H -0.194 1.194 26 C 0.069 3.931 27 C -0.171 4.171 28 C 0.032 3.968 29 N -0.269 5.269 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.252 0.748 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.109 0.891 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.055 0.945 47 H 0.015 0.985 48 H 0.044 0.956 49 H 0.067 0.933 50 H 0.095 0.905 51 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -21.462 19.239 -7.693 29.832 hybrid contribution 0.921 -0.925 1.660 2.112 sum -20.541 18.314 -6.033 28.173 Atomic orbital electron populations 1.21931 0.91069 1.03250 1.04178 1.22671 0.95843 0.93011 0.86886 1.22198 1.01206 0.95073 1.03736 1.86285 1.30945 1.63804 1.40162 1.20229 0.85810 0.88166 0.89777 1.21196 0.97648 1.02649 1.00164 1.21624 0.91666 0.91731 0.96688 1.20729 0.97599 1.07841 0.97844 1.18350 0.84640 0.79573 0.82769 1.90854 1.68257 1.45203 1.41937 1.45923 1.21969 1.54714 1.13003 1.20203 0.82875 0.91095 0.99927 0.93058 1.20538 0.95347 1.01003 0.97282 1.21286 0.96028 0.98536 1.01407 1.20966 0.97517 0.91553 0.87899 1.43836 1.12113 1.63433 1.13173 1.19416 1.12214 1.03254 1.04153 0.91819 1.25712 1.01161 0.94823 1.02880 1.70202 1.47803 1.04586 1.35437 0.85520 0.78916 0.76232 0.80938 1.21489 1.22101 1.19442 1.20657 0.83139 0.91493 0.97835 1.22290 0.98055 0.95696 1.01091 1.22977 0.88539 0.87158 0.98095 1.67338 1.10643 1.24540 1.24425 0.91388 0.88355 0.92098 0.89542 0.93400 0.89038 0.91812 0.81604 0.83519 0.74840 0.89996 0.89899 0.94492 0.89129 0.94448 0.93259 0.94465 0.98451 0.95591 0.93340 0.90466 0.78920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.56 71.98 0.69 -0.66 16 2 C 0.07 0.98 3.10 30.59 0.09 1.07 16 3 C -0.16 -1.93 9.53 71.98 0.69 -1.24 16 4 O -0.31 -5.66 9.75 -88.00 -0.86 -6.52 16 5 C 0.34 6.88 7.46 84.83 0.63 7.52 16 6 C -0.20 -3.89 10.02 22.43 0.22 -3.67 16 7 C 0.01 0.20 9.70 22.70 0.22 0.42 16 8 C -0.23 -5.73 5.89 -19.99 -0.12 -5.84 16 9 C 0.56 17.87 7.59 86.72 0.66 18.53 16 10 O -0.58 -25.59 16.08 -3.96 -0.06 -25.65 16 11 N -0.70 -18.68 4.88 -449.61 -2.20 -20.87 16 12 C 0.16 5.56 2.07 44.16 0.09 5.66 16 13 H 0.05 2.36 6.92 -2.39 -0.02 2.34 16 14 C -0.10 -2.72 4.70 28.61 0.13 -2.58 16 15 C -0.13 -4.09 5.74 29.39 0.17 -3.92 16 16 C 0.15 5.80 5.65 87.37 0.49 6.29 16 17 N -0.60 -30.48 2.26 -697.67 -1.58 -32.05 16 18 C -0.26 -14.79 9.43 84.03 0.79 -14.00 16 19 H 0.06 3.54 7.88 -2.91 -0.02 3.52 16 20 C -0.05 -2.99 4.83 84.86 0.41 -2.58 16 21 N -0.93 -58.36 11.12 21.65 0.24 -58.12 16 22 Si 0.96 48.16 29.59 68.60 2.03 50.19 16 23 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 26 C 0.19 9.91 4.71 86.61 0.41 10.32 16 27 C -0.13 -5.01 5.39 30.35 0.16 -4.85 16 28 C 0.19 3.50 10.71 85.03 0.91 4.41 16 29 N -0.55 -10.65 8.61 -307.83 -2.65 -13.30 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 1.28 6.97 -2.39 -0.02 1.26 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.17 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.15 3.66 7.73 -2.91 -0.02 3.64 16 39 H 0.41 6.92 6.65 -92.71 -0.62 6.30 16 40 H 0.08 1.67 8.04 -2.38 -0.02 1.65 16 41 H 0.08 1.79 7.35 -2.39 -0.02 1.77 16 42 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.04 1.52 7.99 -2.39 -0.02 1.50 16 45 H 0.05 1.77 8.06 -2.39 -0.02 1.75 16 46 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.00 -0.14 8.03 -2.39 -0.02 -0.16 16 48 H 0.03 1.56 6.39 -2.39 -0.02 1.54 16 49 H 0.05 1.90 7.85 -2.39 -0.02 1.88 16 50 H 0.08 2.48 7.31 -2.38 -0.02 2.46 16 51 H 0.19 2.12 6.41 -2.91 -0.02 2.10 16 Total: -1.00 -77.93 404.78 1.90 -76.04 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.31 Total: 15.42 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.66 Total: 14.86 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -6.18 Total: -124.34 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.92 Total: -32.17 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -77.93 1.90 -76.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052431111.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.532 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds