Wall clock time and date at job start Wed Apr 1 2020 04:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47263 * 2 1 4 4 O 1.42902 * 109.47243 * 239.99789 * 2 1 3 5 5 C 1.35657 * 117.00361 * 209.99952 * 4 2 1 6 6 C 1.39285 * 119.61960 * 179.73031 * 5 4 2 7 7 C 1.38336 * 119.30478 * 179.74954 * 6 5 4 8 8 C 1.38785 * 118.55924 * 0.51361 * 7 6 5 9 9 C 1.39128 * 119.18781 * 359.72693 * 8 7 6 10 10 C 1.48147 * 119.69072 * 180.02562 * 9 8 7 11 11 O 1.21520 * 119.99758 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00061 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99875 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.20459 * 35.63435 * 13 12 10 15 15 C 1.50124 * 109.20810 * 155.00071 * 13 12 10 16 16 C 1.52535 * 105.41346 * 218.02379 * 15 13 12 17 17 C 1.46239 * 114.27541 * 270.59086 * 16 15 13 18 18 N 1.50171 * 107.53054 * 58.41291 * 17 16 15 19 19 C 1.36937 * 120.53857 * 109.60811 * 18 17 16 20 20 H 1.08002 * 119.99428 * 156.71813 * 19 18 17 21 21 C 1.38805 * 120.00326 * 336.71654 * 19 18 17 22 22 N 1.31627 * 119.99894 * 340.41192 * 21 19 18 23 23 Si 1.86799 * 120.00497 * 160.41046 * 21 19 18 24 24 H 1.48502 * 109.46815 * 89.99988 * 23 21 19 25 25 H 1.48496 * 109.47564 * 210.00205 * 23 21 19 26 26 H 1.48503 * 109.46681 * 330.00454 * 23 21 19 27 27 C 1.43433 * 118.92184 * 289.58292 * 18 17 16 28 28 C 1.54849 * 109.20634 * 276.31967 * 13 12 10 29 29 N 1.31910 * 119.61618 * 359.97438 * 5 4 2 30 30 H 1.09002 * 109.47040 * 59.99884 * 1 2 3 31 31 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47113 * 300.00238 * 1 2 3 33 33 H 1.08999 * 109.46962 * 119.99586 * 2 1 3 34 34 H 1.08996 * 109.47203 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46843 * 300.00438 * 3 2 1 36 36 H 1.09002 * 109.47250 * 59.99846 * 3 2 1 37 37 H 1.07999 * 120.34678 * 359.97438 * 6 5 4 38 38 H 1.08003 * 120.71553 * 180.21650 * 7 6 5 39 39 H 1.07997 * 120.40448 * 179.71003 * 8 7 6 40 40 H 0.96997 * 120.00251 * 359.97438 * 12 10 9 41 41 H 1.09000 * 110.25141 * 336.99286 * 15 13 12 42 42 H 1.08999 * 110.25005 * 99.05424 * 15 13 12 43 43 H 1.09001 * 108.52357 * 31.83486 * 16 15 13 44 44 H 1.08996 * 108.52179 * 149.51113 * 16 15 13 45 45 H 1.09003 * 109.84538 * 177.91507 * 17 16 15 46 46 H 1.08995 * 109.84801 * 298.90089 * 17 16 15 47 47 H 0.96992 * 120.00357 * 179.97438 * 22 21 19 48 48 H 1.09001 * 108.16123 * 213.29107 * 27 18 17 49 49 H 1.09002 * 108.16027 * 330.06489 * 27 18 17 50 50 H 1.09001 * 109.36135 * 320.99792 * 28 13 12 51 51 H 1.09005 * 109.35741 * 80.58377 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 3.1986 -1.3129 -1.0653 6 6 3.7116 -1.9920 -2.1679 7 6 4.9304 -2.6372 -2.0587 8 6 5.5977 -2.5935 -0.8426 9 6 5.0262 -1.9014 0.2204 10 6 5.7292 -1.8470 1.5233 11 8 6.8001 -2.4049 1.6596 12 7 5.1811 -1.1787 2.5574 13 6 5.8765 -1.1245 3.8457 14 1 6.9511 -1.0724 3.6711 15 6 5.4374 0.1013 4.5928 16 6 6.6903 0.6216 5.2902 17 6 6.9099 0.0661 6.6251 18 7 7.0018 -1.4262 6.4845 19 6 8.1973 -2.0696 6.6632 20 1 8.2126 -3.1150 6.9342 21 6 9.3893 -1.3784 6.4960 22 7 9.4080 -0.2550 5.8102 23 14 10.9670 -2.0423 7.2441 24 1 11.6382 -2.9388 6.2688 25 1 11.8695 -0.9120 7.5800 26 1 10.6472 -2.8041 8.4780 27 6 5.8168 -2.1667 6.1607 28 6 5.5540 -2.4059 4.6530 29 7 3.8563 -1.2883 0.0779 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1654 -2.0115 -3.0994 38 1 5.3511 -3.1676 -2.9002 39 1 6.5489 -3.0908 -0.7229 40 1 4.3264 -0.7331 2.4485 41 1 5.0541 0.8492 3.8986 42 1 4.6762 -0.1578 5.3287 43 1 7.5551 0.3853 4.6702 44 1 6.6135 1.7054 5.3770 45 1 7.8391 0.4566 7.0401 46 1 6.0751 0.3259 7.2759 47 1 10.2409 0.2282 5.6936 48 1 5.8774 -3.1372 6.6531 49 1 4.9597 -1.6329 6.5714 50 1 4.5071 -2.6715 4.5064 51 1 6.1845 -3.2227 4.3015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052832036.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:57 Heat of formation + Delta-G solvation = -30.109786 kcal Electronic energy + Delta-G solvation = -31623.458426 eV Core-core repulsion = 27523.305988 eV Total energy + Delta-G solvation = -4100.152438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.99536 -40.85250 -39.53585 -38.79700 -36.32148 -34.38199 -34.11875 -33.49316 -33.32388 -31.78122 -31.07783 -28.13728 -28.03969 -26.28569 -25.65220 -24.79449 -24.15544 -22.26997 -22.03052 -21.57865 -20.79423 -19.58300 -18.70449 -18.50185 -17.24609 -17.04033 -16.93725 -16.80074 -16.72791 -16.20155 -15.86534 -15.61242 -15.44805 -15.30430 -15.03084 -14.82621 -14.38252 -14.11595 -13.96336 -13.91845 -13.51635 -13.25662 -13.22525 -13.16781 -13.12964 -13.11892 -12.83772 -12.68158 -12.38555 -12.18900 -11.97039 -11.89782 -11.80175 -11.74592 -11.61574 -11.37217 -11.21031 -11.13045 -11.01569 -10.63203 -10.44196 -10.03285 -9.60006 -8.63374 -7.81847 -5.21729 -0.43119 0.21530 1.45667 1.47660 1.56334 1.68954 1.94721 2.08376 2.55072 2.76633 2.93786 3.31359 3.62470 3.79250 3.88543 3.96633 3.99860 4.00914 4.05686 4.10593 4.20085 4.30234 4.32300 4.46027 4.48032 4.62648 4.72727 4.72790 4.84686 4.86294 4.86554 4.88206 4.90144 4.97427 5.05006 5.09250 5.17742 5.23837 5.27360 5.28580 5.29248 5.38265 5.39412 5.49798 5.62931 5.68160 5.77838 6.15369 6.19627 6.40696 6.44132 6.69182 7.17663 7.20427 7.93856 8.41775 9.22446 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015157 B = 0.002804 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.884814 B = 9984.956823 C =11064.408283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 C -0.166 4.166 4 O -0.304 6.304 5 C 0.308 3.692 6 C -0.159 4.159 7 C -0.033 4.033 8 C -0.158 4.158 9 C 0.102 3.898 10 C 0.556 3.444 11 O -0.572 6.572 12 N -0.694 5.694 13 C 0.166 3.834 14 H 0.045 0.955 15 C -0.106 4.106 16 C -0.122 4.122 17 C 0.167 3.833 18 N -0.602 5.602 19 C -0.261 4.261 20 H 0.058 0.942 21 C -0.044 4.044 22 N -0.915 5.915 23 Si 0.955 3.045 24 H -0.295 1.295 25 H -0.290 1.290 26 H -0.273 1.273 27 C 0.158 3.842 28 C -0.140 4.140 29 N -0.524 5.524 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.041 0.959 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.177 0.823 38 H 0.190 0.810 39 H 0.143 0.857 40 H 0.414 0.586 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.246 0.754 48 H 0.029 0.971 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 1.918 -16.286 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 C -0.223 4.223 4 O -0.212 6.212 5 C 0.126 3.874 6 C -0.180 4.180 7 C -0.058 4.058 8 C -0.180 4.180 9 C -0.034 4.034 10 C 0.341 3.659 11 O -0.451 6.451 12 N -0.344 5.344 13 C 0.063 3.937 14 H 0.063 0.937 15 C -0.143 4.143 16 C -0.161 4.161 17 C 0.044 3.956 18 N -0.324 5.324 19 C -0.392 4.392 20 H 0.076 0.924 21 C -0.240 4.240 22 N -0.561 5.561 23 Si 0.785 3.215 24 H -0.223 1.223 25 H -0.216 1.216 26 H -0.198 1.198 27 C 0.029 3.971 28 C -0.182 4.182 29 N -0.251 5.251 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.195 0.805 38 H 0.207 0.793 39 H 0.161 0.839 40 H 0.252 0.748 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.095 0.905 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -19.844 2.130 -15.623 25.346 hybrid contribution 1.619 -0.582 -0.172 1.729 sum -18.225 1.548 -15.795 24.167 Atomic orbital electron populations 1.21903 0.90913 1.03256 1.04114 1.22556 0.95902 0.92729 0.87025 1.22202 1.00900 0.95451 1.03754 1.86306 1.30922 1.64501 1.39476 1.20089 0.86533 0.91009 0.89729 1.21714 0.97549 0.99314 0.99378 1.21858 0.92158 0.94634 0.97132 1.22165 1.02357 1.00089 0.93389 1.20561 0.91322 0.97340 0.94158 1.18430 0.84400 0.78828 0.84196 1.90821 1.23185 1.47115 1.83973 1.46174 1.24708 1.52620 1.10877 1.20926 0.95631 0.96072 0.81118 0.93718 1.21260 0.98442 0.95355 0.99270 1.20739 0.97407 0.98334 0.99648 1.20130 0.98562 0.82124 0.94774 1.44445 1.04995 1.03370 1.79591 1.19370 0.84752 0.95438 1.39606 0.92410 1.25518 0.99922 0.98814 0.99717 1.70137 1.25739 1.18966 1.41294 0.85467 0.80519 0.77078 0.78475 1.22262 1.21629 1.19844 1.20479 0.89562 0.95421 0.91653 1.23183 0.99811 0.96162 0.99073 1.66954 1.08998 1.22827 1.26321 0.91117 0.91974 0.88765 0.90349 0.93948 0.91430 0.89387 0.80511 0.79325 0.83932 0.74830 0.90099 0.89643 0.92268 0.93527 0.92460 0.94792 0.94504 0.95291 0.92212 0.90498 0.96114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.56 71.98 0.69 -0.95 16 2 C 0.07 1.21 3.11 30.60 0.10 1.31 16 3 C -0.17 -2.55 9.53 71.98 0.69 -1.86 16 4 O -0.30 -5.89 9.76 -89.73 -0.88 -6.77 16 5 C 0.31 6.57 7.46 84.93 0.63 7.20 16 6 C -0.16 -2.50 10.05 22.55 0.23 -2.27 16 7 C -0.03 -0.51 10.16 22.42 0.23 -0.28 16 8 C -0.16 -3.85 9.63 22.61 0.22 -3.63 16 9 C 0.10 2.98 6.75 41.84 0.28 3.27 16 10 C 0.56 20.71 7.76 86.88 0.67 21.39 16 11 O -0.57 -26.71 15.98 -3.78 -0.06 -26.77 16 12 N -0.69 -23.46 4.96 -446.53 -2.22 -25.68 16 13 C 0.17 6.62 2.22 44.70 0.10 6.72 16 14 H 0.04 2.36 6.27 -2.39 -0.01 2.35 16 15 C -0.11 -3.61 5.34 29.51 0.16 -3.45 16 16 C -0.12 -5.18 5.02 28.36 0.14 -5.04 16 17 C 0.17 7.71 5.24 83.58 0.44 8.15 16 18 N -0.60 -29.98 2.60 -707.84 -1.84 -31.82 16 19 C -0.26 -14.75 9.63 84.03 0.81 -13.94 16 20 H 0.06 3.29 7.89 -2.91 -0.02 3.26 16 21 C -0.04 -2.49 4.91 84.86 0.42 -2.07 16 22 N -0.92 -53.51 9.43 21.65 0.20 -53.30 16 23 Si 0.96 46.60 29.60 68.60 2.03 48.63 16 24 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 27 C 0.16 6.57 5.18 87.59 0.45 7.02 16 28 C -0.14 -5.61 5.98 31.87 0.19 -5.42 16 29 N -0.52 -13.25 7.82 -298.21 -2.33 -15.58 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.47 6.98 -2.39 -0.02 1.46 16 34 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.18 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.14 3.66 7.63 -2.91 -0.02 3.64 16 40 H 0.41 11.46 7.80 -92.71 -0.72 10.74 16 41 H 0.08 2.34 7.85 -2.39 -0.02 2.32 16 42 H 0.09 2.60 6.28 -2.39 -0.01 2.58 16 43 H 0.06 3.10 5.30 -2.39 -0.01 3.09 16 44 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.06 3.03 6.05 -2.39 -0.01 3.01 16 46 H 0.03 1.37 8.12 -2.39 -0.02 1.35 16 47 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 48 H 0.03 1.22 7.99 -2.39 -0.02 1.21 16 49 H 0.06 2.12 6.88 -2.39 -0.02 2.11 16 50 H 0.08 2.56 8.13 -2.39 -0.02 2.54 16 51 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -72.50 401.70 1.56 -70.94 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 0.21 Total: 24.21 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.44 Total: 16.14 kcal Atomic # 7 Polarization: -120.19 SS G_CDS: -6.19 Total: -126.38 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.94 Total: -33.54 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -72.50 1.56 -70.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052832036.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.835 kcal (2) G-P(sol) polarization free energy of solvation -72.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds