Wall clock time and date at job start Wed Apr 1 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46846 * 2 1 4 4 O 1.42895 * 109.47197 * 119.99887 * 2 1 3 5 5 C 1.35681 * 117.00176 * 90.00096 * 4 2 1 6 6 C 1.38890 * 119.62696 * 180.02562 * 5 4 2 7 7 C 1.39573 * 118.95115 * 179.97438 * 6 5 4 8 8 C 1.48165 * 120.89373 * 179.97438 * 7 6 5 9 9 O 1.21508 * 120.00094 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99884 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99953 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.49012 * 325.04047 * 11 10 8 13 13 C 1.52567 * 109.49043 * 204.99535 * 11 10 8 14 14 C 1.47091 * 114.32574 * 155.01660 * 13 11 10 15 15 C 1.54864 * 110.32048 * 62.80715 * 14 13 11 16 16 N 1.44577 * 109.59997 * 288.73152 * 15 14 13 17 17 C 1.36935 * 118.64603 * 270.70802 * 16 15 14 18 18 H 1.08008 * 119.99845 * 27.24308 * 17 16 15 19 19 C 1.38806 * 120.00218 * 206.97284 * 17 16 15 20 20 N 1.31621 * 119.99954 * 17.02219 * 19 17 16 21 21 Si 1.86800 * 120.00044 * 197.02151 * 19 17 16 22 22 H 1.48498 * 109.47477 * 59.99875 * 21 19 17 23 23 H 1.48507 * 109.47272 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47079 * 299.99640 * 21 19 17 25 25 C 1.47601 * 122.71289 * 90.98386 * 16 15 14 26 26 C 1.50883 * 109.48914 * 85.11101 * 11 10 8 27 27 C 1.39964 * 118.21369 * 0.27430 * 7 6 5 28 28 C 1.37976 * 119.13692 * 359.47792 * 27 7 6 29 29 N 1.31913 * 120.97194 * 0.53383 * 28 27 7 30 30 H 1.09002 * 109.47629 * 299.99784 * 1 2 3 31 31 H 1.08999 * 109.47387 * 60.00508 * 1 2 3 32 32 H 1.09007 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47121 * 240.00099 * 2 1 3 34 34 H 1.08993 * 109.46891 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.46846 * 299.99779 * 3 2 1 36 36 H 1.08990 * 109.47455 * 60.00007 * 3 2 1 37 37 H 1.08005 * 120.52828 * 359.97214 * 6 5 4 38 38 H 0.96997 * 120.00368 * 359.97438 * 10 8 7 39 39 H 1.09007 * 108.51359 * 33.76710 * 13 11 10 40 40 H 1.08994 * 108.51549 * 276.27821 * 13 11 10 41 41 H 1.08993 * 109.33320 * 302.54386 * 14 13 11 42 42 H 1.08999 * 109.19157 * 182.97275 * 14 13 11 43 43 H 1.09003 * 109.45179 * 168.69487 * 15 14 13 44 44 H 1.09003 * 109.45229 * 48.76809 * 15 14 13 45 45 H 0.97003 * 119.99916 * 180.02562 * 20 19 17 46 46 H 1.08998 * 108.95194 * 78.30099 * 25 16 15 47 47 H 1.09003 * 108.94596 * 196.92867 * 25 16 15 48 48 H 1.08992 * 109.36597 * 332.04252 * 26 11 10 49 49 H 1.09004 * 109.36465 * 91.66700 * 26 11 10 50 50 H 1.08003 * 120.43276 * 179.70540 * 27 7 6 51 51 H 1.08000 * 119.51476 * 180.25461 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2117 -2.0109 1.0653 6 6 2.6737 -2.7201 2.1665 7 6 2.8795 -4.0954 2.0466 8 6 3.3719 -4.8938 3.1935 9 8 3.6016 -4.3523 4.2567 10 7 3.5648 -6.2206 3.0575 11 6 4.0511 -7.0102 4.1917 12 1 4.7491 -6.4127 4.7781 13 6 4.7587 -8.2596 3.6761 14 6 5.7582 -8.8152 4.6013 15 6 5.0785 -9.2744 5.9148 16 7 4.6617 -8.1176 6.6754 17 6 5.5425 -7.5661 7.5671 18 1 6.6061 -7.6672 7.4083 19 6 5.0686 -6.8723 8.6720 20 7 3.8176 -7.0187 9.0540 21 14 6.2063 -5.7309 9.6167 22 1 6.7029 -4.6650 8.7098 23 1 5.4636 -5.1148 10.7455 24 1 7.3569 -6.5060 10.1463 25 6 3.3239 -7.5100 6.5346 26 6 2.8850 -7.4176 5.0582 27 6 2.6145 -4.6989 0.8119 28 6 2.1528 -3.9217 -0.2305 29 7 1.9697 -2.6240 -0.0804 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 2.8706 -2.2155 3.1008 38 1 3.3810 -6.6530 2.2089 39 1 5.2552 -8.0136 2.7373 40 1 4.0087 -9.0248 3.4766 41 1 6.5032 -8.0527 4.8281 42 1 6.2469 -9.6683 4.1307 43 1 5.7845 -9.8604 6.5033 44 1 4.2078 -9.8861 5.6784 45 1 3.4863 -6.5335 9.8260 46 1 2.6017 -8.1128 7.0851 47 1 3.3440 -6.5072 6.9615 48 1 2.0889 -6.6793 4.9633 49 1 2.5148 -8.3897 4.7324 50 1 2.7659 -5.7599 0.6778 51 1 1.9423 -4.3819 -1.1846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052859516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:08 Heat of formation + Delta-G solvation = -16.680875 kcal Electronic energy + Delta-G solvation = -30884.932542 eV Core-core repulsion = 26785.362425 eV Total energy + Delta-G solvation = -4099.570117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.07508 -39.75657 -38.39119 -37.51031 -34.75740 -33.61825 -33.12770 -32.61808 -30.94104 -30.55223 -30.07942 -27.59549 -26.22599 -25.17472 -23.82868 -23.50944 -23.22603 -21.92965 -20.43586 -20.17809 -19.23293 -18.69407 -17.39306 -16.77764 -16.43889 -15.98729 -15.82803 -15.73776 -15.12319 -14.77574 -14.66849 -14.53581 -14.25051 -14.04539 -13.84760 -13.59980 -13.35836 -13.17098 -12.87736 -12.65883 -12.63582 -12.42977 -12.26077 -12.17975 -11.91203 -11.64440 -11.27232 -11.10616 -11.06916 -10.88431 -10.71154 -10.42972 -10.22165 -10.15094 -10.10064 -10.05057 -9.91314 -9.68838 -9.61519 -9.55709 -8.79858 -8.77466 -8.29484 -6.59781 -5.70357 -3.14088 0.54499 0.89297 2.64172 2.92340 3.27022 3.46004 3.52139 3.55145 3.68241 3.97344 4.45871 4.53730 4.58993 4.64652 4.70464 4.77890 4.81396 4.93709 5.14292 5.21095 5.28626 5.36896 5.42038 5.46536 5.48946 5.50179 5.54103 5.59459 5.73243 5.78233 5.84370 5.86636 5.99580 6.08161 6.10963 6.20614 6.27093 6.44239 6.49786 6.57980 6.65874 6.75969 6.86586 6.98302 7.01198 7.06880 7.47230 7.52533 7.65573 7.77022 7.91009 8.33908 8.55720 9.31646 9.98822 10.43374 11.37254 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002501 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.930083 B =11195.015915 C =12567.144904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 C -0.152 4.152 4 O -0.299 6.299 5 C 0.323 3.677 6 C -0.135 4.135 7 C -0.044 4.044 8 C 0.549 3.451 9 O -0.510 6.510 10 N -0.717 5.717 11 C 0.153 3.847 12 H 0.105 0.895 13 C -0.106 4.106 14 C -0.145 4.145 15 C 0.156 3.844 16 N -0.590 5.590 17 C -0.261 4.261 18 H 0.064 0.936 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.898 3.102 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.182 3.818 26 C -0.147 4.147 27 C -0.185 4.185 28 C 0.136 3.864 29 N -0.531 5.531 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.155 0.845 38 H 0.392 0.608 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.032 0.968 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.055 0.945 49 H 0.047 0.953 50 H 0.141 0.859 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.608 7.037 -23.390 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.025 3.975 3 C -0.209 4.209 4 O -0.206 6.206 5 C 0.144 3.856 6 C -0.157 4.157 7 C -0.055 4.055 8 C 0.333 3.667 9 O -0.385 6.385 10 N -0.368 5.368 11 C 0.051 3.949 12 H 0.123 0.877 13 C -0.144 4.144 14 C -0.186 4.186 15 C 0.028 3.972 16 N -0.312 5.312 17 C -0.391 4.391 18 H 0.082 0.918 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.728 3.272 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.057 3.943 26 C -0.187 4.187 27 C -0.206 4.206 28 C -0.019 4.019 29 N -0.255 5.255 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.173 0.827 38 H 0.226 0.774 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.095 0.905 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.159 0.841 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.814 8.172 -22.901 25.000 hybrid contribution 0.573 -0.107 0.486 0.759 sum -5.240 8.064 -22.414 24.391 Atomic orbital electron populations 1.22223 0.94838 1.02926 1.02645 1.22363 0.94431 0.92827 0.87876 1.21916 1.02091 0.93841 1.03036 1.86336 1.79990 1.15628 1.38647 1.19628 0.91763 0.84871 0.89369 1.21194 1.01951 0.92913 0.99592 1.20311 0.97308 0.93512 0.94346 1.18053 0.78889 0.82446 0.87270 1.90883 1.49314 1.70816 1.27442 1.46226 1.67293 1.07394 1.15884 1.20609 0.96750 0.92105 0.85458 0.87664 1.20570 0.98855 0.96269 0.98710 1.21449 0.98388 1.00103 0.98701 1.20696 0.96357 0.89421 0.90726 1.43665 1.13376 1.29583 1.44565 1.19105 0.88875 1.30173 1.00938 0.91843 1.25006 0.96348 1.01212 0.96496 1.70048 1.15066 1.43032 1.26455 0.86436 0.80095 0.81395 0.79240 1.20913 1.21684 1.21000 1.21004 0.85546 0.99565 0.88192 1.22505 0.96957 0.99524 0.99746 1.22144 1.03487 1.01728 0.93268 1.22328 0.93327 0.87513 0.98737 1.67118 1.20956 1.12892 1.24554 0.91879 0.91099 0.91979 0.89249 0.91752 0.90484 0.91506 0.82736 0.77384 0.93374 0.92713 0.91870 0.92960 0.93555 0.94996 0.93654 0.95494 0.90530 0.92594 0.93453 0.84139 0.81846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 9.53 37.16 0.35 -0.99 16 2 C 0.08 0.73 3.11 -26.73 -0.08 0.65 16 3 C -0.15 -1.06 9.56 37.16 0.36 -0.71 16 4 O -0.30 -3.59 9.76 -18.75 -0.18 -3.77 16 5 C 0.32 4.02 7.45 -17.16 -0.13 3.90 16 6 C -0.13 -1.83 9.61 -38.84 -0.37 -2.21 16 7 C -0.04 -0.57 5.91 -104.68 -0.62 -1.19 16 8 C 0.55 8.89 7.62 -12.19 -0.09 8.80 16 9 O -0.51 -10.81 16.10 5.36 0.09 -10.72 16 10 N -0.72 -10.12 4.89 -55.91 -0.27 -10.39 16 11 C 0.15 2.68 2.06 -69.21 -0.14 2.54 16 12 H 0.11 2.34 6.92 -51.93 -0.36 1.98 16 13 C -0.11 -1.57 4.69 -29.79 -0.14 -1.71 16 14 C -0.15 -2.44 5.74 -28.58 -0.16 -2.60 16 15 C 0.16 3.16 5.65 -4.09 -0.02 3.14 16 16 N -0.59 -14.54 2.26 -171.87 -0.39 -14.93 16 17 C -0.26 -7.20 9.43 -15.06 -0.14 -7.34 16 18 H 0.06 1.72 7.88 -52.48 -0.41 1.31 16 19 C 0.01 0.24 4.83 -17.43 -0.08 0.15 16 20 N -0.90 -26.78 11.12 55.49 0.62 -26.16 16 21 Si 0.90 22.58 29.59 -169.99 -5.03 17.55 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 25 C 0.18 4.44 4.71 -2.76 -0.01 4.43 16 26 C -0.15 -2.82 5.39 -27.11 -0.15 -2.96 16 27 C -0.19 -1.73 9.61 -39.03 -0.38 -2.10 16 28 C 0.14 1.19 11.17 -17.61 -0.20 0.99 16 29 N -0.53 -5.81 8.61 -13.38 -0.12 -5.93 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.09 0.82 6.98 -51.93 -0.36 0.46 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.15 2.24 7.74 -52.48 -0.41 1.83 16 38 H 0.39 3.99 6.74 -40.82 -0.28 3.72 16 39 H 0.05 0.61 8.04 -51.92 -0.42 0.19 16 40 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 44 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 47 H 0.08 2.16 6.39 -51.93 -0.33 1.83 16 48 H 0.06 1.08 7.85 -51.93 -0.41 0.67 16 49 H 0.05 0.82 7.32 -51.93 -0.38 0.44 16 50 H 0.14 0.89 6.53 -52.48 -0.34 0.55 16 51 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -33.16 405.06 -9.46 -42.62 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.27 Total: 2.86 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.01 Total: 2.77 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.16 Total: -57.41 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.10 Total: -14.49 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.55 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.16 -9.46 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052859516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.940 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds