Wall clock time and date at job start Wed Apr 1 2020 04:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46846 * 2 1 4 4 O 1.42895 * 109.47197 * 119.99887 * 2 1 3 5 5 C 1.35681 * 117.00176 * 90.00096 * 4 2 1 6 6 C 1.38890 * 119.62696 * 180.02562 * 5 4 2 7 7 C 1.39573 * 118.95115 * 179.97438 * 6 5 4 8 8 C 1.48165 * 120.89373 * 179.97438 * 7 6 5 9 9 O 1.21508 * 120.00094 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99884 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99953 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.49012 * 325.04047 * 11 10 8 13 13 C 1.52567 * 109.49043 * 204.99535 * 11 10 8 14 14 C 1.47091 * 114.32574 * 155.01660 * 13 11 10 15 15 C 1.54864 * 110.32048 * 62.80715 * 14 13 11 16 16 N 1.44577 * 109.59997 * 288.73152 * 15 14 13 17 17 C 1.36935 * 118.64603 * 270.70802 * 16 15 14 18 18 H 1.08008 * 119.99845 * 27.24308 * 17 16 15 19 19 C 1.38806 * 120.00218 * 206.97284 * 17 16 15 20 20 N 1.31621 * 119.99954 * 17.02219 * 19 17 16 21 21 Si 1.86800 * 120.00044 * 197.02151 * 19 17 16 22 22 H 1.48498 * 109.47477 * 59.99875 * 21 19 17 23 23 H 1.48507 * 109.47272 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47079 * 299.99640 * 21 19 17 25 25 C 1.47601 * 122.71289 * 90.98386 * 16 15 14 26 26 C 1.50883 * 109.48914 * 85.11101 * 11 10 8 27 27 C 1.39964 * 118.21369 * 0.27430 * 7 6 5 28 28 C 1.37976 * 119.13692 * 359.47792 * 27 7 6 29 29 N 1.31913 * 120.97194 * 0.53383 * 28 27 7 30 30 H 1.09002 * 109.47629 * 299.99784 * 1 2 3 31 31 H 1.08999 * 109.47387 * 60.00508 * 1 2 3 32 32 H 1.09007 * 109.47249 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47121 * 240.00099 * 2 1 3 34 34 H 1.08993 * 109.46891 * 180.02562 * 3 2 1 35 35 H 1.09009 * 109.46846 * 299.99779 * 3 2 1 36 36 H 1.08990 * 109.47455 * 60.00007 * 3 2 1 37 37 H 1.08005 * 120.52828 * 359.97214 * 6 5 4 38 38 H 0.96997 * 120.00368 * 359.97438 * 10 8 7 39 39 H 1.09007 * 108.51359 * 33.76710 * 13 11 10 40 40 H 1.08994 * 108.51549 * 276.27821 * 13 11 10 41 41 H 1.08993 * 109.33320 * 302.54386 * 14 13 11 42 42 H 1.08999 * 109.19157 * 182.97275 * 14 13 11 43 43 H 1.09003 * 109.45179 * 168.69487 * 15 14 13 44 44 H 1.09003 * 109.45229 * 48.76809 * 15 14 13 45 45 H 0.97003 * 119.99916 * 180.02562 * 20 19 17 46 46 H 1.08998 * 108.95194 * 78.30099 * 25 16 15 47 47 H 1.09003 * 108.94596 * 196.92867 * 25 16 15 48 48 H 1.08992 * 109.36597 * 332.04252 * 26 11 10 49 49 H 1.09004 * 109.36465 * 91.66700 * 26 11 10 50 50 H 1.08003 * 120.43276 * 179.70540 * 27 7 6 51 51 H 1.08000 * 119.51476 * 180.25461 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2117 -2.0109 1.0653 6 6 2.6737 -2.7201 2.1665 7 6 2.8795 -4.0954 2.0466 8 6 3.3719 -4.8938 3.1935 9 8 3.6016 -4.3523 4.2567 10 7 3.5648 -6.2206 3.0575 11 6 4.0511 -7.0102 4.1917 12 1 4.7491 -6.4127 4.7781 13 6 4.7587 -8.2596 3.6761 14 6 5.7582 -8.8152 4.6013 15 6 5.0785 -9.2744 5.9148 16 7 4.6617 -8.1176 6.6754 17 6 5.5425 -7.5661 7.5671 18 1 6.6061 -7.6672 7.4083 19 6 5.0686 -6.8723 8.6720 20 7 3.8176 -7.0187 9.0540 21 14 6.2063 -5.7309 9.6167 22 1 6.7029 -4.6650 8.7098 23 1 5.4636 -5.1148 10.7455 24 1 7.3569 -6.5060 10.1463 25 6 3.3239 -7.5100 6.5346 26 6 2.8850 -7.4176 5.0582 27 6 2.6145 -4.6989 0.8119 28 6 2.1528 -3.9217 -0.2305 29 7 1.9697 -2.6240 -0.0804 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 2.8706 -2.2155 3.1008 38 1 3.3810 -6.6530 2.2089 39 1 5.2552 -8.0136 2.7373 40 1 4.0087 -9.0248 3.4766 41 1 6.5032 -8.0527 4.8281 42 1 6.2469 -9.6683 4.1307 43 1 5.7845 -9.8604 6.5033 44 1 4.2078 -9.8861 5.6784 45 1 3.4863 -6.5335 9.8260 46 1 2.6017 -8.1128 7.0851 47 1 3.3440 -6.5072 6.9615 48 1 2.0889 -6.6793 4.9633 49 1 2.5148 -8.3897 4.7324 50 1 2.7659 -5.7599 0.6778 51 1 1.9423 -4.3819 -1.1846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052859516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:06 Heat of formation + Delta-G solvation = -39.471411 kcal Electronic energy + Delta-G solvation = -30885.920814 eV Core-core repulsion = 26785.362425 eV Total energy + Delta-G solvation = -4100.558389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.01102 -40.97787 -39.46854 -38.86631 -36.40669 -34.67415 -34.25835 -33.80345 -32.67504 -32.05972 -31.09849 -28.19044 -27.94658 -26.46795 -25.29624 -24.92873 -24.38798 -22.87486 -21.73212 -21.32077 -20.99737 -19.71672 -18.57040 -18.30163 -17.72587 -17.07132 -16.84788 -16.81144 -16.64744 -16.23036 -15.89462 -15.70786 -15.45670 -15.36822 -14.96686 -14.83497 -14.78305 -14.37425 -14.14814 -14.01449 -13.63149 -13.32229 -13.27308 -13.20786 -13.05424 -13.00038 -12.87979 -12.73291 -12.54898 -12.18647 -12.03789 -11.94974 -11.80390 -11.75217 -11.51674 -11.42538 -11.33790 -11.26478 -11.08286 -10.67215 -10.43703 -10.14703 -9.60132 -8.64112 -7.86663 -5.31281 -0.42830 0.06900 1.39308 1.45413 1.49485 1.73883 1.78386 2.17591 2.49762 2.74596 3.21906 3.27808 3.47381 3.69724 3.80437 3.85144 3.87860 3.97566 4.01605 4.04404 4.10204 4.26307 4.37603 4.46475 4.48417 4.58287 4.67226 4.67877 4.70117 4.81432 4.83158 4.84344 4.87134 4.95364 4.97587 5.03064 5.15403 5.18366 5.23567 5.24308 5.26030 5.34334 5.36573 5.50617 5.57372 5.62398 5.70802 5.76590 6.21303 6.41173 6.48555 6.70577 7.16520 7.18599 7.97255 8.34922 9.18051 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.002501 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.930083 B =11195.015915 C =12567.144904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 C -0.149 4.149 4 O -0.319 6.319 5 C 0.315 3.685 6 C -0.164 4.164 7 C -0.056 4.056 8 C 0.547 3.453 9 O -0.575 6.575 10 N -0.694 5.694 11 C 0.162 3.838 12 H 0.050 0.950 13 C -0.103 4.103 14 C -0.133 4.133 15 C 0.146 3.854 16 N -0.603 5.603 17 C -0.260 4.260 18 H 0.065 0.935 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.954 3.046 22 H -0.289 1.289 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.194 3.806 26 C -0.132 4.132 27 C -0.166 4.166 28 C 0.147 3.853 29 N -0.530 5.530 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.418 0.582 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.092 0.908 43 H 0.037 0.963 44 H 0.050 0.950 45 H 0.246 0.754 46 H -0.001 1.001 47 H 0.024 0.976 48 H 0.047 0.953 49 H 0.080 0.920 50 H 0.182 0.818 51 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 5.266 -28.214 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.018 3.982 3 C -0.206 4.206 4 O -0.227 6.227 5 C 0.137 3.863 6 C -0.186 4.186 7 C -0.067 4.067 8 C 0.333 3.667 9 O -0.454 6.454 10 N -0.346 5.346 11 C 0.057 3.943 12 H 0.069 0.931 13 C -0.141 4.141 14 C -0.173 4.173 15 C 0.020 3.980 16 N -0.326 5.326 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.245 4.245 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.193 1.193 25 C 0.068 3.932 26 C -0.172 4.172 27 C -0.186 4.186 28 C -0.009 4.009 29 N -0.255 5.255 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.121 0.879 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.257 0.743 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.110 0.890 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.017 0.983 47 H 0.043 0.957 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.199 0.801 51 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.793 6.360 -27.797 29.097 hybrid contribution 0.562 0.397 1.885 2.007 sum -5.231 6.757 -25.911 27.284 Atomic orbital electron populations 1.22197 0.94027 1.02346 1.03562 1.22641 0.95144 0.93494 0.86898 1.21942 1.01779 0.92774 1.04071 1.86318 1.80221 1.15773 1.40401 1.19564 0.92155 0.85139 0.89454 1.21080 1.04284 0.93817 0.99371 1.20067 0.99000 0.92879 0.94762 1.18604 0.77713 0.83034 0.87305 1.90862 1.52151 1.72124 1.30287 1.45878 1.66168 1.06523 1.16079 1.20262 0.95079 0.92907 0.86015 0.93145 1.20528 0.99153 0.95099 0.99284 1.21291 0.98100 1.00798 0.97110 1.20978 0.97146 0.88039 0.91809 1.43837 1.12819 1.31151 1.44767 1.19419 0.89507 1.29329 1.00781 0.91774 1.25704 0.97676 1.03136 0.98030 1.70197 1.16617 1.44250 1.26969 0.85537 0.78858 0.79554 0.77772 1.21615 1.22109 1.19307 1.20658 0.85203 0.96003 0.91332 1.22293 0.97388 1.01090 0.96391 1.22540 1.01254 1.03604 0.91177 1.23191 0.90960 0.86527 1.00209 1.67247 1.20613 1.14173 1.23429 0.92427 0.88687 0.93238 0.89154 0.92274 0.87927 0.91939 0.85568 0.74315 0.89812 0.89647 0.94568 0.88955 0.94427 0.93138 0.94480 0.98340 0.95748 0.93467 0.90138 0.80104 0.77018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.53 71.98 0.69 -1.75 16 2 C 0.07 1.28 3.11 30.59 0.10 1.38 16 3 C -0.15 -1.96 9.56 71.98 0.69 -1.27 16 4 O -0.32 -7.94 9.76 -89.99 -0.88 -8.82 16 5 C 0.31 7.90 7.45 84.80 0.63 8.53 16 6 C -0.16 -4.71 9.61 22.75 0.22 -4.49 16 7 C -0.06 -1.43 5.91 -19.90 -0.12 -1.55 16 8 C 0.55 17.96 7.62 86.88 0.66 18.62 16 9 O -0.58 -26.33 16.10 -3.74 -0.06 -26.39 16 10 N -0.69 -18.16 4.89 -449.09 -2.20 -20.35 16 11 C 0.16 5.46 2.06 44.16 0.09 5.55 16 12 H 0.05 2.32 6.92 -2.39 -0.02 2.30 16 13 C -0.10 -2.61 4.69 28.61 0.13 -2.47 16 14 C -0.13 -4.04 5.74 29.39 0.17 -3.87 16 15 C 0.15 5.73 5.65 87.37 0.49 6.22 16 16 N -0.60 -30.47 2.26 -697.67 -1.58 -32.04 16 17 C -0.26 -14.83 9.43 84.03 0.79 -14.04 16 18 H 0.06 3.58 7.88 -2.91 -0.02 3.55 16 19 C -0.05 -2.99 4.83 84.86 0.41 -2.58 16 20 N -0.93 -58.70 11.12 21.65 0.24 -58.46 16 21 Si 0.95 48.54 29.59 68.60 2.03 50.57 16 22 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 23 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 C 0.19 9.90 4.71 86.61 0.41 10.31 16 26 C -0.13 -5.00 5.39 30.35 0.16 -4.84 16 27 C -0.17 -2.43 9.61 22.63 0.22 -2.21 16 28 C 0.15 1.92 11.17 84.62 0.94 2.87 16 29 N -0.53 -10.44 8.61 -309.15 -2.66 -13.10 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.84 16 33 H 0.09 1.53 6.98 -2.39 -0.02 1.51 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.13 4.22 7.74 -2.91 -0.02 4.19 16 38 H 0.42 6.48 6.74 -92.71 -0.62 5.85 16 39 H 0.08 1.62 8.04 -2.38 -0.02 1.60 16 40 H 0.09 1.75 7.36 -2.39 -0.02 1.73 16 41 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.51 7.99 -2.39 -0.02 1.50 16 44 H 0.05 1.79 8.07 -2.39 -0.02 1.77 16 45 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 46 H 0.00 -0.08 8.03 -2.39 -0.02 -0.10 16 47 H 0.02 1.47 6.39 -2.39 -0.02 1.45 16 48 H 0.05 1.86 7.85 -2.39 -0.02 1.84 16 49 H 0.08 2.54 7.32 -2.38 -0.02 2.52 16 50 H 0.18 1.11 6.53 -2.91 -0.02 1.10 16 51 H 0.21 0.75 8.06 -2.91 -0.02 0.72 16 Total: -1.00 -82.24 405.06 1.89 -80.36 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.30 Total: 13.82 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: 6.69 Total: 14.41 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.20 Total: -123.96 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.94 Total: -35.21 kcal Atomic # 14 Polarization: 48.54 SS G_CDS: 2.03 Total: 50.57 kcal Total: -82.24 1.89 -80.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052859516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.885 kcal (2) G-P(sol) polarization free energy of solvation -82.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds