Wall clock time and date at job start Wed Apr 1 2020 05:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46983 * 2 1 4 4 O 1.42901 * 109.47222 * 119.99945 * 2 1 3 5 5 C 1.35718 * 117.00114 * 156.86371 * 4 2 1 6 6 C 1.39235 * 120.38241 * 5.92622 * 5 4 2 7 7 C 1.38322 * 118.44407 * 180.26314 * 6 5 4 8 8 C 1.39466 * 119.13581 * 359.72519 * 7 6 5 9 9 C 1.47925 * 119.65856 * 180.02562 * 8 7 6 10 10 O 1.21547 * 120.00335 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00146 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00406 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.48645 * 325.05229 * 12 11 9 14 14 C 1.52560 * 109.49107 * 205.00164 * 12 11 9 15 15 C 1.47094 * 114.32714 * 155.02428 * 14 12 11 16 16 C 1.54863 * 110.32067 * 62.79908 * 15 14 12 17 17 N 1.44579 * 109.60165 * 288.73360 * 16 15 14 18 18 C 1.36935 * 118.64663 * 270.72866 * 17 16 15 19 19 H 1.08005 * 119.99853 * 31.80562 * 18 17 16 20 20 C 1.38812 * 119.99880 * 211.81209 * 18 17 16 21 21 N 1.31611 * 120.00104 * 15.31372 * 20 18 17 22 22 Si 1.86797 * 119.99726 * 195.31279 * 20 18 17 23 23 H 1.48499 * 109.47223 * 59.99978 * 22 20 18 24 24 H 1.48507 * 109.47211 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47421 * 300.00155 * 22 20 18 26 26 C 1.47606 * 122.71130 * 90.70418 * 17 16 15 27 27 C 1.50879 * 109.48594 * 85.11319 * 12 11 9 28 28 N 1.32794 * 120.68065 * 359.97438 * 8 7 6 29 29 C 1.31374 * 121.69758 * 0.02562 * 28 8 7 30 30 H 1.09001 * 109.46828 * 299.99625 * 1 2 3 31 31 H 1.08994 * 109.47222 * 60.00214 * 1 2 3 32 32 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47275 * 239.99765 * 2 1 3 34 34 H 1.09005 * 109.47156 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47497 * 299.99671 * 3 2 1 36 36 H 1.08994 * 109.47328 * 60.00282 * 3 2 1 37 37 H 1.08004 * 120.77666 * 359.96431 * 6 5 4 38 38 H 1.08008 * 120.43162 * 179.70828 * 7 6 5 39 39 H 0.96997 * 119.99706 * 359.97438 * 11 9 8 40 40 H 1.09011 * 108.51176 * 276.27401 * 14 12 11 41 41 H 1.08998 * 108.51464 * 33.76671 * 14 12 11 42 42 H 1.08998 * 109.33028 * 183.06341 * 15 14 12 43 43 H 1.09000 * 109.32430 * 302.71385 * 15 14 12 44 44 H 1.08993 * 109.45153 * 48.77836 * 16 15 14 45 45 H 1.09003 * 109.44817 * 168.69607 * 16 15 14 46 46 H 0.97001 * 119.99893 * 179.97438 * 21 20 18 47 47 H 1.09006 * 108.94105 * 78.57459 * 26 17 16 48 48 H 1.08992 * 108.94620 * 197.29170 * 26 17 16 49 49 H 1.09002 * 109.37293 * 332.04572 * 27 12 11 50 50 H 1.09001 * 109.36629 * 91.66259 * 27 12 11 51 51 H 1.08002 * 119.59428 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2601 -1.1902 1.1113 6 6 4.0721 -0.9510 0.0058 7 6 5.3409 -1.5016 -0.0113 8 6 5.7633 -2.2677 1.0748 9 6 7.1181 -2.8615 1.0690 10 8 7.8567 -2.6811 0.1207 11 7 7.5336 -3.6027 2.1152 12 6 8.8752 -4.1912 2.1092 13 1 9.1402 -4.4819 1.0927 14 6 8.8956 -5.4208 3.0121 15 6 9.9336 -6.4058 2.6710 16 6 11.3416 -5.7833 2.8391 17 7 11.5725 -4.8157 1.7900 18 6 12.1281 -5.2429 0.6136 19 1 11.9286 -6.2413 0.2533 20 6 12.9479 -4.3927 -0.1159 21 7 13.4361 -3.3071 0.4457 22 14 13.3580 -4.7894 -1.8946 23 1 12.1054 -4.8497 -2.6898 24 1 14.2444 -3.7330 -2.4457 25 1 14.0508 -6.1011 -1.9622 26 6 11.2336 -3.3863 1.9344 27 6 9.8710 -3.1792 2.6197 28 7 4.9621 -2.4688 2.1146 29 6 3.7518 -1.9602 2.1620 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 3.7176 -0.3537 -0.8213 38 1 5.9958 -1.3405 -0.8549 39 1 6.9444 -3.7464 2.8722 40 1 9.0538 -5.0931 4.0397 41 1 7.9228 -5.9090 2.9541 42 1 9.8405 -7.2703 3.3283 43 1 9.8034 -6.7234 1.6365 44 1 11.4070 -5.2899 3.8087 45 1 12.0950 -6.5689 2.7805 46 1 14.0092 -2.7132 -0.0639 47 1 12.0061 -2.8978 2.5284 48 1 11.2046 -2.9279 0.9460 49 1 9.5076 -2.1742 2.4050 50 1 9.9864 -3.2973 3.6971 51 1 3.1287 -2.1457 3.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052979654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:11 Heat of formation + Delta-G solvation = -20.709023 kcal Electronic energy + Delta-G solvation = -30765.451215 eV Core-core repulsion = 26665.706424 eV Total energy + Delta-G solvation = -4099.744791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.17425 -39.75476 -38.59206 -37.37730 -34.61051 -33.85275 -32.90236 -32.44704 -31.16510 -30.66582 -29.88959 -27.86590 -26.03695 -24.99169 -24.17188 -23.42901 -23.10711 -21.88935 -20.42313 -20.07611 -19.14450 -18.81258 -17.76099 -17.15238 -16.46895 -16.06849 -15.69587 -15.46801 -14.99379 -14.92329 -14.72609 -14.41529 -14.26803 -14.01981 -13.64297 -13.60472 -13.32140 -13.09535 -12.95493 -12.87662 -12.77605 -12.58386 -12.36746 -12.33099 -11.82893 -11.59081 -11.46914 -11.31253 -11.03076 -10.81440 -10.68746 -10.38041 -10.18251 -10.13393 -10.12325 -9.97567 -9.88968 -9.62259 -9.52568 -9.47114 -8.80261 -8.55212 -8.28282 -6.47421 -5.66482 -3.15314 0.54650 0.88978 2.56755 2.83555 3.37956 3.47395 3.52599 3.55867 3.79828 4.08342 4.14256 4.26763 4.31792 4.47011 4.55385 4.61322 4.81429 4.84956 4.99047 5.14703 5.16075 5.20957 5.25508 5.38304 5.47781 5.52049 5.56832 5.59131 5.63886 5.67401 5.74150 5.86392 6.01608 6.08765 6.19668 6.30976 6.40188 6.53431 6.59080 6.68767 6.77285 6.80198 6.84904 6.95741 7.09536 7.16094 7.47437 7.52347 7.78714 7.91964 7.94824 8.53127 8.62642 9.36403 10.02370 10.50117 11.40494 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.002290 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.691845 B =12221.920520 C =13276.572406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.184 4.184 4 O -0.301 6.301 5 C 0.100 3.900 6 C -0.178 4.178 7 C -0.068 4.068 8 C 0.044 3.956 9 C 0.566 3.434 10 O -0.523 6.523 11 N -0.707 5.707 12 C 0.153 3.847 13 H 0.103 0.897 14 C -0.107 4.107 15 C -0.145 4.145 16 C 0.157 3.843 17 N -0.589 5.589 18 C -0.262 4.262 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.184 3.816 27 C -0.146 4.146 28 N -0.420 5.420 29 C 0.073 3.927 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.402 0.598 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.046 0.954 46 H 0.253 0.747 47 H 0.028 0.972 48 H 0.068 0.932 49 H 0.055 0.945 50 H 0.047 0.953 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.449 6.618 2.897 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.241 4.241 4 O -0.213 6.213 5 C 0.052 3.948 6 C -0.204 4.204 7 C -0.089 4.089 8 C -0.094 4.094 9 C 0.350 3.650 10 O -0.399 6.399 11 N -0.357 5.357 12 C 0.050 3.950 13 H 0.121 0.879 14 C -0.145 4.145 15 C -0.186 4.186 16 C 0.029 3.971 17 N -0.310 5.310 18 C -0.392 4.392 19 H 0.079 0.921 20 C -0.188 4.188 21 N -0.543 5.543 22 Si 0.728 3.272 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.059 3.941 27 C -0.186 4.186 28 N -0.131 5.131 29 C -0.089 4.089 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.236 0.764 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.046 0.954 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -25.570 6.386 2.994 26.525 hybrid contribution -0.423 0.523 -1.490 1.635 sum -25.994 6.909 1.504 26.938 Atomic orbital electron populations 1.21852 0.91934 1.03414 1.03326 1.22554 0.95826 0.92774 0.87071 1.22433 1.02390 0.95748 1.03576 1.86106 1.27052 1.68580 1.39560 1.20408 0.85214 0.93719 0.95503 1.21762 0.95063 1.04220 0.99327 1.22010 0.95179 0.92985 0.98734 1.21255 0.95566 1.00548 0.92037 1.17700 0.84753 0.79302 0.83268 1.90872 1.54736 1.59666 1.34599 1.46158 1.17595 1.51361 1.20598 1.20588 0.79332 0.92433 1.02674 0.87877 1.20560 0.99180 0.95862 0.98854 1.21445 0.98687 0.96989 1.01468 1.20709 0.92733 0.92522 0.91186 1.43594 1.70790 1.03525 1.13092 1.19058 1.22565 0.99780 0.97803 0.92132 1.25123 0.96595 0.98187 0.98907 1.70030 1.34334 1.14796 1.35179 0.86448 0.77879 0.77264 0.85610 1.20892 1.21729 1.20942 1.20872 0.88913 0.84788 0.99573 1.22433 0.98539 0.98000 0.99653 1.67602 1.03250 1.17746 1.24526 1.22219 0.92495 0.96247 0.97938 0.91253 0.90258 0.91454 0.90673 0.91641 0.90643 0.91125 0.83619 0.82972 0.76370 0.92728 0.93312 0.92995 0.91973 0.95040 0.93548 0.93703 0.95434 0.91349 0.92632 0.93394 0.81403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.56 37.16 0.36 -0.27 16 2 C 0.07 0.43 2.86 -26.74 -0.08 0.35 16 3 C -0.18 -0.94 9.13 37.15 0.34 -0.61 16 4 O -0.30 -2.52 9.81 -18.86 -0.19 -2.71 16 5 C 0.10 0.97 6.61 -38.84 -0.26 0.71 16 6 C -0.18 -1.70 8.24 -39.18 -0.32 -2.02 16 7 C -0.07 -0.84 9.62 -39.09 -0.38 -1.22 16 8 C 0.04 0.63 6.74 -83.03 -0.56 0.07 16 9 C 0.57 9.96 7.62 -12.29 -0.09 9.87 16 10 O -0.52 -11.28 15.98 5.32 0.09 -11.19 16 11 N -0.71 -11.57 4.92 -55.99 -0.28 -11.84 16 12 C 0.15 2.87 2.06 -69.22 -0.14 2.73 16 13 H 0.10 2.39 6.92 -51.93 -0.36 2.03 16 14 C -0.11 -1.74 4.69 -29.79 -0.14 -1.88 16 15 C -0.14 -2.58 5.74 -28.58 -0.16 -2.74 16 16 C 0.16 3.30 5.65 -4.08 -0.02 3.28 16 17 N -0.59 -14.88 2.25 -172.11 -0.39 -15.27 16 18 C -0.26 -7.35 9.37 -15.06 -0.14 -7.49 16 19 H 0.06 1.68 7.88 -52.48 -0.41 1.26 16 20 C 0.01 0.33 4.85 -17.43 -0.08 0.24 16 21 N -0.90 -27.00 11.39 55.49 0.63 -26.36 16 22 Si 0.90 22.67 29.58 -169.99 -5.03 17.64 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.18 4.59 4.67 -2.96 -0.01 4.58 16 27 C -0.15 -2.95 5.38 -27.32 -0.15 -3.10 16 28 N -0.42 -5.31 9.52 -9.68 -0.09 -5.41 16 29 C 0.07 0.75 11.14 -17.38 -0.19 0.56 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.40 6.48 -51.93 -0.34 0.06 16 34 H 0.06 0.39 6.68 -51.93 -0.35 0.05 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.15 1.01 5.48 -52.48 -0.29 0.73 16 38 H 0.15 1.86 7.63 -52.48 -0.40 1.46 16 39 H 0.40 5.60 7.92 -40.82 -0.32 5.28 16 40 H 0.05 0.83 7.36 -51.92 -0.38 0.44 16 41 H 0.05 0.71 8.04 -51.93 -0.42 0.29 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 45 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.05 16 47 H 0.03 0.74 7.99 -51.93 -0.41 0.32 16 48 H 0.07 1.95 6.73 -51.93 -0.35 1.60 16 49 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 50 H 0.05 0.88 7.32 -51.93 -0.38 0.50 16 51 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -32.99 402.40 -9.40 -42.39 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.17 Total: 3.62 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -2.04 Total: 3.07 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: -0.12 Total: -58.88 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.10 Total: -13.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.99 -9.40 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052979654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.677 kcal (2) G-P(sol) polarization free energy of solvation -32.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds