Wall clock time and date at job start Wed Apr 1 2020 05:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.46983 * 2 1 4 4 O 1.42901 * 109.47222 * 119.99945 * 2 1 3 5 5 C 1.35718 * 117.00114 * 156.86371 * 4 2 1 6 6 C 1.39235 * 120.38241 * 5.92622 * 5 4 2 7 7 C 1.38322 * 118.44407 * 180.26314 * 6 5 4 8 8 C 1.39466 * 119.13581 * 359.72519 * 7 6 5 9 9 C 1.47925 * 119.65856 * 180.02562 * 8 7 6 10 10 O 1.21547 * 120.00335 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00146 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00406 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.48645 * 325.05229 * 12 11 9 14 14 C 1.52560 * 109.49107 * 205.00164 * 12 11 9 15 15 C 1.47094 * 114.32714 * 155.02428 * 14 12 11 16 16 C 1.54863 * 110.32067 * 62.79908 * 15 14 12 17 17 N 1.44579 * 109.60165 * 288.73360 * 16 15 14 18 18 C 1.36935 * 118.64663 * 270.72866 * 17 16 15 19 19 H 1.08005 * 119.99853 * 31.80562 * 18 17 16 20 20 C 1.38812 * 119.99880 * 211.81209 * 18 17 16 21 21 N 1.31611 * 120.00104 * 15.31372 * 20 18 17 22 22 Si 1.86797 * 119.99726 * 195.31279 * 20 18 17 23 23 H 1.48499 * 109.47223 * 59.99978 * 22 20 18 24 24 H 1.48507 * 109.47211 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47421 * 300.00155 * 22 20 18 26 26 C 1.47606 * 122.71130 * 90.70418 * 17 16 15 27 27 C 1.50879 * 109.48594 * 85.11319 * 12 11 9 28 28 N 1.32794 * 120.68065 * 359.97438 * 8 7 6 29 29 C 1.31374 * 121.69758 * 0.02562 * 28 8 7 30 30 H 1.09001 * 109.46828 * 299.99625 * 1 2 3 31 31 H 1.08994 * 109.47222 * 60.00214 * 1 2 3 32 32 H 1.09001 * 109.46802 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47275 * 239.99765 * 2 1 3 34 34 H 1.09005 * 109.47156 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47497 * 299.99671 * 3 2 1 36 36 H 1.08994 * 109.47328 * 60.00282 * 3 2 1 37 37 H 1.08004 * 120.77666 * 359.96431 * 6 5 4 38 38 H 1.08008 * 120.43162 * 179.70828 * 7 6 5 39 39 H 0.96997 * 119.99706 * 359.97438 * 11 9 8 40 40 H 1.09011 * 108.51176 * 276.27401 * 14 12 11 41 41 H 1.08998 * 108.51464 * 33.76671 * 14 12 11 42 42 H 1.08998 * 109.33028 * 183.06341 * 15 14 12 43 43 H 1.09000 * 109.32430 * 302.71385 * 15 14 12 44 44 H 1.08993 * 109.45153 * 48.77836 * 16 15 14 45 45 H 1.09003 * 109.44817 * 168.69607 * 16 15 14 46 46 H 0.97001 * 119.99893 * 179.97438 * 21 20 18 47 47 H 1.09006 * 108.94105 * 78.57459 * 26 17 16 48 48 H 1.08992 * 108.94620 * 197.29170 * 26 17 16 49 49 H 1.09002 * 109.37293 * 332.04572 * 27 12 11 50 50 H 1.09001 * 109.36629 * 91.66259 * 27 12 11 51 51 H 1.08002 * 119.59428 * 179.97438 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2601 -1.1902 1.1113 6 6 4.0721 -0.9510 0.0058 7 6 5.3409 -1.5016 -0.0113 8 6 5.7633 -2.2677 1.0748 9 6 7.1181 -2.8615 1.0690 10 8 7.8567 -2.6811 0.1207 11 7 7.5336 -3.6027 2.1152 12 6 8.8752 -4.1912 2.1092 13 1 9.1402 -4.4819 1.0927 14 6 8.8956 -5.4208 3.0121 15 6 9.9336 -6.4058 2.6710 16 6 11.3416 -5.7833 2.8391 17 7 11.5725 -4.8157 1.7900 18 6 12.1281 -5.2429 0.6136 19 1 11.9286 -6.2413 0.2533 20 6 12.9479 -4.3927 -0.1159 21 7 13.4361 -3.3071 0.4457 22 14 13.3580 -4.7894 -1.8946 23 1 12.1054 -4.8497 -2.6898 24 1 14.2444 -3.7330 -2.4457 25 1 14.0508 -6.1011 -1.9622 26 6 11.2336 -3.3863 1.9344 27 6 9.8710 -3.1792 2.6197 28 7 4.9621 -2.4688 2.1146 29 6 3.7518 -1.9602 2.1620 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 3.7176 -0.3537 -0.8213 38 1 5.9958 -1.3405 -0.8549 39 1 6.9444 -3.7464 2.8722 40 1 9.0538 -5.0931 4.0397 41 1 7.9228 -5.9090 2.9541 42 1 9.8405 -7.2703 3.3283 43 1 9.8034 -6.7234 1.6365 44 1 11.4070 -5.2899 3.8087 45 1 12.0950 -6.5689 2.7805 46 1 14.0092 -2.7132 -0.0639 47 1 12.0061 -2.8978 2.5284 48 1 11.2046 -2.9279 0.9460 49 1 9.5076 -2.1742 2.4050 50 1 9.9864 -3.2973 3.6971 51 1 3.1287 -2.1457 3.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052979654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:10 Heat of formation + Delta-G solvation = -41.984378 kcal Electronic energy + Delta-G solvation = -30766.373784 eV Core-core repulsion = 26665.706424 eV Total energy + Delta-G solvation = -4100.667359 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.05139 -40.95979 -39.65471 -38.86303 -36.33548 -34.55944 -34.31948 -33.44304 -32.77957 -32.34062 -31.11466 -28.23351 -27.84793 -26.21923 -25.34038 -25.09156 -24.44461 -22.64399 -21.67096 -21.47406 -20.96501 -19.55602 -18.83797 -18.53388 -18.07851 -17.21063 -16.76940 -16.64179 -16.35676 -16.24500 -15.87626 -15.69797 -15.57930 -15.21116 -15.02087 -14.85563 -14.53880 -14.32947 -14.10370 -13.99956 -13.60670 -13.53050 -13.43133 -13.22800 -13.13056 -13.02351 -12.84739 -12.71344 -12.54652 -12.18458 -12.05893 -12.01684 -11.78301 -11.75686 -11.52051 -11.41705 -11.32944 -11.26878 -10.97938 -10.72284 -10.46275 -10.12865 -9.53623 -8.56661 -7.84627 -5.35936 -0.41185 0.05931 1.41128 1.46462 1.51394 1.67313 1.92037 2.12456 2.50883 2.74859 3.11351 3.28675 3.45626 3.65973 3.70469 3.76594 3.80733 3.89185 3.94376 3.97571 4.08661 4.12081 4.39167 4.46107 4.48568 4.61230 4.67233 4.68444 4.71223 4.77113 4.80896 4.85893 4.87803 4.88546 4.95663 5.02481 5.14772 5.20533 5.22588 5.23567 5.25317 5.28139 5.36428 5.49751 5.56969 5.63520 5.71361 5.72636 6.11032 6.43229 6.44678 6.74383 7.20355 7.22601 7.96638 8.37837 9.19332 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.002290 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.691845 B =12221.920520 C =13276.572406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 C -0.183 4.183 4 O -0.302 6.302 5 C 0.115 3.885 6 C -0.170 4.170 7 C -0.075 4.075 8 C 0.016 3.984 9 C 0.562 3.438 10 O -0.576 6.576 11 N -0.694 5.694 12 C 0.162 3.838 13 H 0.054 0.946 14 C -0.103 4.103 15 C -0.131 4.131 16 C 0.148 3.852 17 N -0.602 5.602 18 C -0.265 4.265 19 H 0.061 0.939 20 C -0.046 4.046 21 N -0.932 5.932 22 Si 0.958 3.042 23 H -0.287 1.287 24 H -0.293 1.293 25 H -0.268 1.268 26 C 0.198 3.802 27 C -0.131 4.131 28 N -0.425 5.425 29 C 0.072 3.928 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.173 0.827 38 H 0.143 0.857 39 H 0.417 0.583 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.037 0.963 44 H 0.047 0.953 45 H 0.039 0.961 46 H 0.248 0.752 47 H 0.000 1.000 48 H 0.019 0.981 49 H 0.047 0.953 50 H 0.076 0.924 51 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.953 6.149 4.082 30.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 C -0.241 4.241 4 O -0.214 6.214 5 C 0.065 3.935 6 C -0.196 4.196 7 C -0.096 4.096 8 C -0.120 4.120 9 C 0.348 3.652 10 O -0.456 6.456 11 N -0.345 5.345 12 C 0.057 3.943 13 H 0.072 0.928 14 C -0.141 4.141 15 C -0.172 4.172 16 C 0.022 3.978 17 N -0.324 5.324 18 C -0.396 4.396 19 H 0.079 0.921 20 C -0.242 4.242 21 N -0.578 5.578 22 Si 0.786 3.214 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.193 1.193 26 C 0.072 3.928 27 C -0.171 4.171 28 N -0.137 5.137 29 C -0.091 4.091 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.190 0.810 38 H 0.161 0.839 39 H 0.255 0.745 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.018 0.982 48 H 0.038 0.962 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -29.113 5.879 4.222 29.999 hybrid contribution 0.476 0.726 -1.823 2.019 sum -28.637 6.605 2.399 29.486 Atomic orbital electron populations 1.21883 0.90529 1.03606 1.04274 1.22883 0.96928 0.92959 0.86390 1.22440 1.01735 0.95421 1.04456 1.86133 1.26009 1.68259 1.41006 1.20455 0.85617 0.92493 0.94892 1.21959 0.93737 1.03678 1.00206 1.22009 0.96288 0.93218 0.98061 1.20759 0.94529 1.02795 0.93885 1.18252 0.85812 0.78594 0.82511 1.90840 1.56651 1.61583 1.36492 1.45941 1.16758 1.50785 1.20987 1.20262 0.80143 0.93312 1.00536 0.92804 1.20517 1.00139 0.94297 0.99146 1.21286 0.96457 0.98395 1.01018 1.20954 0.94738 0.91573 0.90537 1.43764 1.70949 1.04067 1.13616 1.19360 1.21557 0.99669 0.98978 0.92142 1.25860 0.97300 0.98493 1.02563 1.70177 1.35473 1.15833 1.36286 0.85495 0.77295 0.77500 0.81125 1.21350 1.21906 1.19343 1.20523 0.90914 0.84521 0.96823 1.22227 0.96075 0.98171 1.00594 1.67518 1.04022 1.18293 1.23884 1.22693 0.91825 0.95600 0.98964 0.91314 0.88346 0.91642 0.89829 0.92612 0.88757 0.91363 0.80981 0.83880 0.74523 0.90160 0.90535 0.89090 0.94393 0.93433 0.94243 0.94346 0.98153 0.96215 0.93436 0.90588 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.56 71.98 0.69 -0.11 16 2 C 0.06 0.55 2.86 30.59 0.09 0.64 16 3 C -0.18 -1.39 9.13 71.98 0.66 -0.74 16 4 O -0.30 -4.19 9.81 -90.39 -0.89 -5.07 16 5 C 0.12 1.93 6.61 22.75 0.15 2.08 16 6 C -0.17 -2.97 8.24 22.53 0.19 -2.78 16 7 C -0.07 -1.84 9.62 22.59 0.22 -1.63 16 8 C 0.02 0.47 6.74 41.86 0.28 0.76 16 9 C 0.56 20.47 7.62 86.81 0.66 21.13 16 10 O -0.58 -26.56 15.98 -3.86 -0.06 -26.62 16 11 N -0.69 -22.54 4.92 -449.32 -2.21 -24.75 16 12 C 0.16 6.10 2.06 44.16 0.09 6.19 16 13 H 0.05 2.61 6.92 -2.39 -0.02 2.59 16 14 C -0.10 -3.09 4.69 28.61 0.13 -2.96 16 15 C -0.13 -4.38 5.74 29.39 0.17 -4.22 16 16 C 0.15 6.14 5.65 87.37 0.49 6.63 16 17 N -0.60 -31.34 2.25 -698.43 -1.57 -32.91 16 18 C -0.26 -15.37 9.37 84.03 0.79 -14.58 16 19 H 0.06 3.44 7.88 -2.91 -0.02 3.42 16 20 C -0.05 -2.77 4.85 84.86 0.41 -2.36 16 21 N -0.93 -58.73 11.39 21.65 0.25 -58.49 16 22 Si 0.96 48.36 29.58 68.60 2.03 50.39 16 23 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 24 H -0.29 -14.75 7.11 99.48 0.71 -14.04 16 25 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 26 C 0.20 10.40 4.67 86.48 0.40 10.80 16 27 C -0.13 -5.36 5.38 30.21 0.16 -5.20 16 28 N -0.43 -10.16 9.52 -184.53 -1.76 -11.92 16 29 C 0.07 1.32 11.14 85.00 0.95 2.26 16 30 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.08 0.61 6.48 -2.39 -0.02 0.60 16 34 H 0.05 0.55 6.68 -2.38 -0.02 0.53 16 35 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 37 H 0.17 1.98 5.48 -2.91 -0.02 1.97 16 38 H 0.14 3.71 7.63 -2.91 -0.02 3.69 16 39 H 0.42 10.91 7.92 -92.71 -0.73 10.17 16 40 H 0.08 2.07 7.36 -2.38 -0.02 2.05 16 41 H 0.08 1.93 8.04 -2.39 -0.02 1.91 16 42 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.81 8.07 -2.39 -0.02 1.79 16 45 H 0.04 1.67 7.99 -2.39 -0.02 1.65 16 46 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.00 0.02 7.99 -2.38 -0.02 0.01 16 48 H 0.02 1.19 6.73 -2.39 -0.02 1.18 16 49 H 0.05 2.00 7.85 -2.39 -0.02 1.98 16 50 H 0.08 2.69 7.32 -2.39 -0.02 2.67 16 51 H 0.20 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -77.31 402.40 2.52 -74.78 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.20 Total: 18.65 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 6.53 Total: 15.94 kcal Atomic # 7 Polarization: -122.78 SS G_CDS: -5.29 Total: -128.07 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.95 Total: -31.69 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -77.31 2.52 -74.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052979654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.799 kcal (2) G-P(sol) polarization free energy of solvation -77.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds