Wall clock time and date at job start Wed Apr 1 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 O 1.42899 * 109.47012 * 239.99829 * 2 1 3 5 5 C 1.35506 * 116.99734 * 209.99897 * 4 2 1 6 6 C 1.39168 * 119.52455 * 180.02562 * 5 4 2 7 7 C 1.37955 * 119.25936 * 179.97438 * 6 5 4 8 8 C 1.40282 * 118.36055 * 359.97438 * 7 6 5 9 9 C 1.47618 * 120.49858 * 179.97438 * 8 7 6 10 10 O 1.21581 * 120.00142 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00356 * 179.97438 * 11 9 8 13 13 H 1.09008 * 109.49518 * 325.06314 * 12 11 9 14 14 C 1.53041 * 109.49975 * 204.99711 * 12 11 9 15 15 C 1.53034 * 109.53979 * 301.41350 * 14 12 11 16 16 C 1.53194 * 109.31213 * 298.63378 * 15 14 12 17 17 H 1.09000 * 109.58404 * 294.70592 * 16 15 14 18 18 C 1.53001 * 109.58705 * 174.42261 * 16 15 14 19 19 N 1.46929 * 108.77424 * 54.63566 * 16 15 14 20 20 C 1.36941 * 120.63157 * 126.41574 * 19 16 15 21 21 H 1.07999 * 119.99703 * 330.17558 * 20 19 16 22 22 C 1.38805 * 120.00083 * 150.17835 * 20 19 16 23 23 N 1.31619 * 120.00312 * 344.48289 * 22 20 19 24 24 Si 1.86801 * 120.00319 * 164.48042 * 22 20 19 25 25 H 1.48506 * 109.46654 * 59.99750 * 24 22 20 26 26 H 1.48491 * 109.47369 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47178 * 300.00387 * 24 22 20 28 28 C 1.46927 * 118.73669 * 306.38784 * 19 16 15 29 29 C 1.39522 * 119.00485 * 0.02562 * 8 7 6 30 30 N 1.31672 * 120.62585 * 359.75123 * 29 8 7 31 31 H 1.09003 * 109.47061 * 60.00472 * 1 2 3 32 32 H 1.09001 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47303 * 300.00394 * 1 2 3 34 34 H 1.09003 * 109.47061 * 119.99528 * 2 1 3 35 35 H 1.08997 * 109.46921 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46789 * 299.99694 * 3 2 1 37 37 H 1.09000 * 109.47375 * 59.99650 * 3 2 1 38 38 H 1.07997 * 120.37077 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.81631 * 179.97438 * 7 6 5 40 40 H 0.97005 * 119.99805 * 359.97438 * 11 9 8 41 41 H 1.09005 * 109.45628 * 61.43613 * 14 12 11 42 42 H 1.09005 * 109.46073 * 181.40047 * 14 12 11 43 43 H 1.08998 * 109.49747 * 58.58596 * 15 14 12 44 44 H 1.08994 * 109.49789 * 178.68444 * 15 14 12 45 45 H 1.08998 * 109.47101 * 59.99906 * 18 16 15 46 46 H 1.09000 * 109.47139 * 180.02562 * 18 16 15 47 47 H 1.09004 * 109.46641 * 299.99760 * 18 16 15 48 48 H 0.97000 * 120.00864 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.59064 * 293.82424 * 28 19 16 50 50 H 1.09003 * 109.58535 * 173.39749 * 28 19 16 51 51 H 1.08001 * 119.68861 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 3.1972 -1.3122 -1.0653 6 6 3.7110 -1.9849 -2.1700 7 6 4.9241 -2.6326 -2.0608 8 6 5.5961 -2.5858 -0.8303 9 6 6.8968 -3.2629 -0.6608 10 8 7.3934 -3.8673 -1.5915 11 7 7.5335 -3.2119 0.5260 12 6 8.8241 -3.8843 0.6944 13 1 8.8360 -4.8016 0.1056 14 6 9.0347 -4.2229 2.1719 15 6 8.9846 -2.9392 3.0035 16 6 10.1112 -2.0021 2.5570 17 1 11.0757 -2.4536 2.7891 18 6 9.9833 -0.6627 3.2855 19 7 10.0009 -1.7869 1.1077 20 6 9.9480 -0.5193 0.5925 21 1 9.5156 0.2820 1.1733 22 6 10.4502 -0.2642 -0.6762 23 7 11.2401 -1.1404 -1.2597 24 14 10.0047 1.3226 -1.5554 25 1 10.4638 2.4814 -0.7481 26 1 10.6648 1.3538 -2.8852 27 1 8.5319 1.3944 -1.7314 28 6 9.9489 -2.9579 0.2217 29 6 5.0161 -1.8906 0.2313 30 7 3.8578 -1.2825 0.0818 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 3.1661 -1.9997 -3.1023 39 1 5.3460 -3.1627 -2.9019 40 1 7.1372 -2.7299 1.2687 41 1 8.2494 -4.9019 2.5043 42 1 10.0060 -4.7008 2.3001 43 1 8.0229 -2.4478 2.8565 44 1 9.1114 -3.1837 4.0581 45 1 10.0527 -0.8260 4.3609 46 1 10.7854 0.0027 2.9661 47 1 9.0203 -0.2105 3.0480 48 1 11.5914 -0.9620 -2.1462 49 1 10.9002 -3.4885 0.2611 50 1 9.7506 -2.6344 -0.8002 51 1 5.5237 -1.8478 1.1836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071546063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:31 Heat of formation + Delta-G solvation = -20.787755 kcal Electronic energy + Delta-G solvation = -31933.823443 eV Core-core repulsion = 27834.075239 eV Total energy + Delta-G solvation = -4099.748205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.86674 -39.52101 -38.25433 -37.29935 -34.18830 -33.50067 -32.75230 -32.49027 -31.30987 -29.98606 -29.57800 -27.50129 -26.23975 -25.03251 -24.14012 -24.04072 -22.17871 -21.46724 -20.80969 -20.36783 -18.82526 -18.62659 -17.64107 -16.94226 -16.21170 -15.86421 -15.38504 -15.04930 -14.91601 -14.56366 -14.33987 -14.32714 -14.01936 -13.82885 -13.58014 -13.31330 -13.23323 -12.99002 -12.84879 -12.65631 -12.57217 -12.51818 -12.42656 -12.11163 -11.88207 -11.23127 -11.16329 -11.13929 -10.97208 -10.92877 -10.88681 -10.69365 -10.38878 -10.33944 -9.98412 -9.96100 -9.90578 -9.53131 -9.46552 -9.29731 -8.61732 -8.43357 -8.32582 -6.58286 -5.73866 -3.18272 0.81386 1.18178 2.83531 3.18465 3.39152 3.45995 3.46805 3.65151 4.01348 4.11201 4.51423 4.62611 4.74103 4.82002 4.89575 4.99560 5.02445 5.18498 5.30321 5.30890 5.35655 5.43213 5.47401 5.50447 5.52573 5.57451 5.59472 5.60538 5.77896 5.89828 6.00239 6.00581 6.09624 6.11817 6.18494 6.32505 6.32823 6.35078 6.44167 6.51838 6.59891 6.68257 6.89039 7.05140 7.11540 7.12008 7.38512 7.68890 7.70066 7.84916 8.05986 8.50643 8.73860 9.24939 9.89343 10.45605 11.34150 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.003528 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.663977 B = 7934.776638 C = 8482.199693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 C -0.170 4.170 4 O -0.300 6.300 5 C 0.337 3.663 6 C -0.200 4.200 7 C 0.014 3.986 8 C -0.212 4.212 9 C 0.565 3.435 10 O -0.543 6.543 11 N -0.694 5.694 12 C 0.119 3.881 13 H 0.077 0.923 14 C -0.119 4.119 15 C -0.130 4.130 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.252 4.252 21 H 0.067 0.933 22 C 0.009 3.991 23 N -0.898 5.898 24 Si 0.894 3.106 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.162 3.838 29 C 0.179 3.821 30 N -0.543 5.543 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.393 0.607 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.254 0.746 49 H 0.026 0.974 50 H 0.095 0.905 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.401 -2.071 5.806 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.227 4.227 4 O -0.208 6.208 5 C 0.158 3.842 6 C -0.220 4.220 7 C -0.011 4.011 8 C -0.218 4.218 9 C 0.351 3.649 10 O -0.422 6.422 11 N -0.344 5.344 12 C 0.013 3.987 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.170 4.170 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.190 4.190 23 N -0.542 5.542 24 Si 0.724 3.276 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.036 3.964 29 C 0.022 3.978 30 N -0.266 5.266 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.163 0.837 39 H 0.171 0.829 40 H 0.228 0.772 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.079 0.921 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.044 0.956 50 H 0.114 0.886 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.487 -1.986 5.466 18.428 hybrid contribution 0.115 0.836 -0.685 1.087 sum -17.372 -1.150 4.781 18.054 Atomic orbital electron populations 1.21908 0.92929 1.02919 1.02963 1.22376 0.94324 0.92914 0.88007 1.22226 1.02537 0.95454 1.02519 1.86258 1.31632 1.64055 1.38815 1.19998 0.85603 0.88748 0.89805 1.21008 0.98255 1.03652 0.99115 1.21534 0.91003 0.91839 0.96752 1.20957 0.98499 1.05973 0.96326 1.17723 0.83690 0.80285 0.83184 1.90756 1.67613 1.44068 1.39757 1.45753 1.21887 1.54171 1.12612 1.21813 0.84566 0.96550 0.95749 0.90478 1.21697 1.01594 0.97531 0.94872 1.22068 1.00495 0.96467 0.97949 1.20463 0.94210 0.93315 0.86190 0.95766 1.21793 1.02241 0.98178 0.97082 1.44028 1.85105 1.02389 0.98988 1.19010 1.32824 0.86603 0.99702 0.91566 1.25039 0.97061 0.97273 0.99658 1.69970 1.32774 1.35951 1.15491 0.86507 0.78127 0.83733 0.79206 1.20966 1.21650 1.21224 1.21175 0.91955 0.86416 0.96894 1.22595 0.88774 0.88425 0.98044 1.67227 1.10788 1.24071 1.24563 0.91678 0.91868 0.90480 0.89079 0.91687 0.92048 0.91054 0.83687 0.82883 0.77150 0.92983 0.91018 0.92823 0.92804 0.94447 0.92076 0.92974 0.93615 0.95610 0.88647 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.56 37.16 0.36 -0.77 16 2 C 0.08 0.82 3.10 -26.73 -0.08 0.73 16 3 C -0.17 -1.67 9.53 37.16 0.35 -1.32 16 4 O -0.30 -3.76 9.75 -18.21 -0.18 -3.94 16 5 C 0.34 4.63 7.46 -16.96 -0.13 4.51 16 6 C -0.20 -2.59 10.02 -39.34 -0.39 -2.98 16 7 C 0.01 0.21 9.70 -38.92 -0.38 -0.17 16 8 C -0.21 -3.38 5.89 -104.82 -0.62 -4.00 16 9 C 0.57 10.59 7.74 -12.43 -0.10 10.49 16 10 O -0.54 -11.98 16.08 5.29 0.09 -11.89 16 11 N -0.69 -12.06 4.87 -54.70 -0.27 -12.33 16 12 C 0.12 2.20 2.81 -67.81 -0.19 2.01 16 13 H 0.08 1.47 7.58 -51.92 -0.39 1.07 16 14 C -0.12 -1.80 5.58 -26.69 -0.15 -1.95 16 15 C -0.13 -1.99 5.21 -26.61 -0.14 -2.13 16 16 C 0.16 3.16 3.50 -67.60 -0.24 2.92 16 17 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 18 C -0.14 -2.40 7.95 37.16 0.30 -2.10 16 19 N -0.58 -13.52 2.90 -164.77 -0.48 -14.00 16 20 C -0.25 -6.56 8.58 -15.06 -0.13 -6.68 16 21 H 0.07 1.69 6.23 -52.49 -0.33 1.36 16 22 C 0.01 0.25 4.94 -17.43 -0.09 0.16 16 23 N -0.90 -26.23 11.23 55.49 0.62 -25.61 16 24 Si 0.89 22.12 29.58 -169.99 -5.03 17.09 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 C 0.16 3.79 4.88 -3.71 -0.02 3.77 16 29 C 0.18 2.56 10.71 -17.14 -0.18 2.37 16 30 N -0.54 -7.67 8.61 -12.96 -0.11 -7.78 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.99 6.97 -51.93 -0.36 0.63 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 39 H 0.15 2.11 7.73 -52.49 -0.41 1.71 16 40 H 0.39 6.01 4.82 -40.82 -0.20 5.82 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 47 H 0.05 0.92 7.40 -51.93 -0.38 0.54 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.10 2.65 6.15 -51.93 -0.32 2.33 16 51 H 0.16 1.97 6.41 -52.49 -0.34 1.63 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -31.62 402.93 -9.19 -40.81 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.09 Total: 6.71 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.82 Total: 4.86 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: -0.23 Total: -59.72 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.09 Total: -15.83 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.62 -9.19 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.019 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds