Wall clock time and date at job start Wed Apr 1 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47077 * 2 1 4 4 O 1.42899 * 109.47012 * 239.99829 * 2 1 3 5 5 C 1.35506 * 116.99734 * 209.99897 * 4 2 1 6 6 C 1.39168 * 119.52455 * 180.02562 * 5 4 2 7 7 C 1.37955 * 119.25936 * 179.97438 * 6 5 4 8 8 C 1.40282 * 118.36055 * 359.97438 * 7 6 5 9 9 C 1.47618 * 120.49858 * 179.97438 * 8 7 6 10 10 O 1.21581 * 120.00142 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00356 * 179.97438 * 11 9 8 13 13 H 1.09008 * 109.49518 * 325.06314 * 12 11 9 14 14 C 1.53041 * 109.49975 * 204.99711 * 12 11 9 15 15 C 1.53034 * 109.53979 * 301.41350 * 14 12 11 16 16 C 1.53194 * 109.31213 * 298.63378 * 15 14 12 17 17 H 1.09000 * 109.58404 * 294.70592 * 16 15 14 18 18 C 1.53001 * 109.58705 * 174.42261 * 16 15 14 19 19 N 1.46929 * 108.77424 * 54.63566 * 16 15 14 20 20 C 1.36941 * 120.63157 * 126.41574 * 19 16 15 21 21 H 1.07999 * 119.99703 * 330.17558 * 20 19 16 22 22 C 1.38805 * 120.00083 * 150.17835 * 20 19 16 23 23 N 1.31619 * 120.00312 * 344.48289 * 22 20 19 24 24 Si 1.86801 * 120.00319 * 164.48042 * 22 20 19 25 25 H 1.48506 * 109.46654 * 59.99750 * 24 22 20 26 26 H 1.48491 * 109.47369 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47178 * 300.00387 * 24 22 20 28 28 C 1.46927 * 118.73669 * 306.38784 * 19 16 15 29 29 C 1.39522 * 119.00485 * 0.02562 * 8 7 6 30 30 N 1.31672 * 120.62585 * 359.75123 * 29 8 7 31 31 H 1.09003 * 109.47061 * 60.00472 * 1 2 3 32 32 H 1.09001 * 109.47140 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47303 * 300.00394 * 1 2 3 34 34 H 1.09003 * 109.47061 * 119.99528 * 2 1 3 35 35 H 1.08997 * 109.46921 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46789 * 299.99694 * 3 2 1 37 37 H 1.09000 * 109.47375 * 59.99650 * 3 2 1 38 38 H 1.07997 * 120.37077 * 359.97438 * 6 5 4 39 39 H 1.08000 * 120.81631 * 179.97438 * 7 6 5 40 40 H 0.97005 * 119.99805 * 359.97438 * 11 9 8 41 41 H 1.09005 * 109.45628 * 61.43613 * 14 12 11 42 42 H 1.09005 * 109.46073 * 181.40047 * 14 12 11 43 43 H 1.08998 * 109.49747 * 58.58596 * 15 14 12 44 44 H 1.08994 * 109.49789 * 178.68444 * 15 14 12 45 45 H 1.08998 * 109.47101 * 59.99906 * 18 16 15 46 46 H 1.09000 * 109.47139 * 180.02562 * 18 16 15 47 47 H 1.09004 * 109.46641 * 299.99760 * 18 16 15 48 48 H 0.97000 * 120.00864 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.59064 * 293.82424 * 28 19 16 50 50 H 1.09003 * 109.58535 * 173.39749 * 28 19 16 51 51 H 1.08001 * 119.68861 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 3.1972 -1.3122 -1.0653 6 6 3.7110 -1.9849 -2.1700 7 6 4.9241 -2.6326 -2.0608 8 6 5.5961 -2.5858 -0.8303 9 6 6.8968 -3.2629 -0.6608 10 8 7.3934 -3.8673 -1.5915 11 7 7.5335 -3.2119 0.5260 12 6 8.8241 -3.8843 0.6944 13 1 8.8360 -4.8016 0.1056 14 6 9.0347 -4.2229 2.1719 15 6 8.9846 -2.9392 3.0035 16 6 10.1112 -2.0021 2.5570 17 1 11.0757 -2.4536 2.7891 18 6 9.9833 -0.6627 3.2855 19 7 10.0009 -1.7869 1.1077 20 6 9.9480 -0.5193 0.5925 21 1 9.5156 0.2820 1.1733 22 6 10.4502 -0.2642 -0.6762 23 7 11.2401 -1.1404 -1.2597 24 14 10.0047 1.3226 -1.5554 25 1 10.4638 2.4814 -0.7481 26 1 10.6648 1.3538 -2.8852 27 1 8.5319 1.3944 -1.7314 28 6 9.9489 -2.9579 0.2217 29 6 5.0161 -1.8906 0.2313 30 7 3.8578 -1.2825 0.0818 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 3.1661 -1.9997 -3.1023 39 1 5.3460 -3.1627 -2.9019 40 1 7.1372 -2.7299 1.2687 41 1 8.2494 -4.9019 2.5043 42 1 10.0060 -4.7008 2.3001 43 1 8.0229 -2.4478 2.8565 44 1 9.1114 -3.1837 4.0581 45 1 10.0527 -0.8260 4.3609 46 1 10.7854 0.0027 2.9661 47 1 9.0203 -0.2105 3.0480 48 1 11.5914 -0.9620 -2.1462 49 1 10.9002 -3.4885 0.2611 50 1 9.7506 -2.6344 -0.8002 51 1 5.5237 -1.8478 1.1836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071546063.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:30 Heat of formation + Delta-G solvation = -41.381421 kcal Electronic energy + Delta-G solvation = -31934.716452 eV Core-core repulsion = 27834.075239 eV Total energy + Delta-G solvation = -4100.641213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98253 -40.88822 -39.48031 -38.71034 -35.82090 -34.54600 -34.30288 -33.62448 -32.66416 -31.74657 -30.87174 -28.18057 -27.84221 -26.78804 -25.35757 -25.09946 -23.86350 -22.55258 -22.01625 -21.84844 -20.39124 -19.67334 -18.95342 -18.29574 -17.82152 -17.10576 -16.84328 -16.47125 -16.09486 -15.96324 -15.69737 -15.55949 -15.41742 -15.25082 -14.92173 -14.62855 -14.47481 -14.30352 -14.07573 -13.99763 -13.75315 -13.60719 -13.27916 -13.18344 -12.96484 -12.88916 -12.84687 -12.59438 -12.56314 -12.40246 -12.12992 -12.07124 -11.93607 -11.77320 -11.55533 -11.27284 -11.12276 -11.07677 -11.02651 -10.63156 -10.50009 -10.01634 -9.59411 -8.54399 -7.81100 -5.25905 -0.35171 0.08872 1.39107 1.42604 1.46840 1.85835 1.89411 2.28714 2.50069 2.77811 3.07320 3.34908 3.65566 3.67766 3.77748 3.89149 3.93214 4.00920 4.03404 4.09806 4.13260 4.21807 4.27338 4.51444 4.52216 4.61333 4.68108 4.70429 4.77048 4.81665 4.84989 4.85641 4.91612 4.99381 5.01285 5.08463 5.13126 5.15371 5.19680 5.26417 5.29305 5.30816 5.35626 5.59654 5.63773 5.69954 5.76128 5.77174 6.12853 6.46144 6.59136 6.65774 7.20820 7.31673 7.95342 8.45861 9.23934 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010125 B = 0.003528 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2764.663977 B = 7934.776638 C = 8482.199693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 C -0.167 4.167 4 O -0.303 6.303 5 C 0.335 3.665 6 C -0.195 4.195 7 C 0.008 3.992 8 C -0.234 4.234 9 C 0.561 3.439 10 O -0.587 6.587 11 N -0.685 5.685 12 C 0.129 3.871 13 H 0.068 0.932 14 C -0.111 4.111 15 C -0.120 4.120 16 C 0.153 3.847 17 H 0.013 0.987 18 C -0.128 4.128 19 N -0.593 5.593 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.945 3.055 25 H -0.271 1.271 26 H -0.303 1.303 27 H -0.287 1.287 28 C 0.172 3.828 29 C 0.186 3.814 30 N -0.546 5.546 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.171 0.829 39 H 0.152 0.848 40 H 0.405 0.595 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.032 0.968 47 H 0.052 0.948 48 H 0.242 0.758 49 H -0.003 1.003 50 H 0.046 0.954 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.352 -1.494 8.601 22.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.016 3.984 3 C -0.224 4.224 4 O -0.210 6.210 5 C 0.156 3.844 6 C -0.215 4.215 7 C -0.018 4.018 8 C -0.240 4.240 9 C 0.349 3.651 10 O -0.469 6.469 11 N -0.335 5.335 12 C 0.022 3.978 13 H 0.086 0.914 14 C -0.148 4.148 15 C -0.158 4.158 16 C 0.048 3.952 17 H 0.031 0.969 18 C -0.186 4.186 19 N -0.317 5.317 20 C -0.366 4.366 21 H 0.093 0.907 22 C -0.246 4.246 23 N -0.582 5.582 24 Si 0.775 3.225 25 H -0.196 1.196 26 H -0.230 1.230 27 H -0.214 1.214 28 C 0.044 3.956 29 C 0.028 3.972 30 N -0.270 5.270 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.188 0.812 39 H 0.170 0.830 40 H 0.243 0.757 41 H 0.105 0.895 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.109 0.891 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.015 0.985 50 H 0.064 0.936 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -20.478 -1.385 8.329 22.150 hybrid contribution 0.980 0.686 -1.490 1.911 sum -19.498 -0.699 6.839 20.675 Atomic orbital electron populations 1.21914 0.90610 1.03416 1.04193 1.22661 0.96077 0.92699 0.86954 1.22216 1.00882 0.95548 1.03784 1.86273 1.30850 1.63836 1.40080 1.20253 0.85911 0.88394 0.89833 1.21220 0.97592 1.02638 1.00037 1.21636 0.91599 0.92111 0.96426 1.20824 0.97764 1.07598 0.97790 1.18201 0.84480 0.79659 0.82793 1.90728 1.68948 1.46064 1.41139 1.45636 1.21151 1.53957 1.12766 1.21524 0.83237 0.94710 0.98296 0.91422 1.21674 1.03046 0.98369 0.91754 1.21964 0.98935 0.95125 0.99819 1.20779 0.95503 0.95367 0.83548 0.96898 1.21725 1.01095 0.96543 0.99218 1.44237 1.85123 1.01379 1.00958 1.19350 1.30203 0.87836 0.99199 0.90703 1.25671 0.98136 0.99717 1.01029 1.70140 1.35091 1.37757 1.15233 0.85676 0.77381 0.81610 0.77870 1.19639 1.22950 1.21407 1.20852 0.92616 0.87161 0.94922 1.22815 0.88705 0.87484 0.98202 1.67302 1.10666 1.24114 1.24875 0.91355 0.91756 0.88335 0.89647 0.94132 0.91730 0.88909 0.81180 0.82998 0.75677 0.89456 0.90806 0.91750 0.89070 0.90613 0.94834 0.92913 0.94868 0.98471 0.93563 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.56 71.98 0.69 -1.07 16 2 C 0.07 1.31 3.10 30.59 0.09 1.40 16 3 C -0.17 -2.94 9.53 71.98 0.69 -2.25 16 4 O -0.30 -7.01 9.75 -88.08 -0.86 -7.87 16 5 C 0.33 8.68 7.46 84.83 0.63 9.31 16 6 C -0.19 -4.80 10.02 22.43 0.22 -4.58 16 7 C 0.01 0.23 9.70 22.70 0.22 0.45 16 8 C -0.23 -7.41 5.89 -19.99 -0.12 -7.53 16 9 C 0.56 21.36 7.74 86.72 0.67 22.03 16 10 O -0.59 -27.08 16.08 -3.97 -0.06 -27.15 16 11 N -0.68 -23.36 4.87 -445.25 -2.17 -25.53 16 12 C 0.13 4.74 2.81 45.07 0.13 4.87 16 13 H 0.07 2.64 7.58 -2.38 -0.02 2.62 16 14 C -0.11 -3.04 5.58 30.62 0.17 -2.87 16 15 C -0.12 -3.18 5.21 30.67 0.16 -3.02 16 16 C 0.15 5.60 3.50 44.97 0.16 5.75 16 17 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 18 C -0.13 -4.21 7.95 71.98 0.57 -3.64 16 19 N -0.59 -27.74 2.90 -675.21 -1.96 -29.70 16 20 C -0.24 -12.36 8.58 84.03 0.72 -11.63 16 21 H 0.08 3.76 6.23 -2.91 -0.02 3.75 16 22 C -0.05 -2.87 4.94 84.86 0.42 -2.45 16 23 N -0.94 -57.54 11.23 21.65 0.24 -57.30 16 24 Si 0.94 46.67 29.58 68.60 2.03 48.70 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 28 C 0.17 8.33 4.88 86.36 0.42 8.75 16 29 C 0.19 5.03 10.71 85.03 0.91 5.94 16 30 N -0.55 -14.52 8.61 -307.80 -2.65 -17.17 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.67 6.97 -2.39 -0.02 1.65 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.15 4.33 7.73 -2.91 -0.02 4.31 16 40 H 0.41 11.53 4.82 -92.70 -0.45 11.09 16 41 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.06 1.61 6.40 -2.39 -0.02 1.59 16 44 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.03 1.26 7.66 -2.39 -0.02 1.24 16 47 H 0.05 1.71 7.40 -2.39 -0.02 1.69 16 48 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 49 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.05 2.72 6.15 -2.39 -0.01 2.70 16 51 H 0.18 3.98 6.41 -2.91 -0.02 3.96 16 Total: -1.00 -73.10 402.93 1.82 -71.29 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.49 Total: 25.26 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 6.76 Total: 19.46 kcal Atomic # 7 Polarization: -123.16 SS G_CDS: -6.54 Total: -129.70 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.92 Total: -35.01 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -73.10 1.82 -71.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071546063.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.906 kcal (2) G-P(sol) polarization free energy of solvation -73.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds