Wall clock time and date at job start Wed Apr 1 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 O 1.42903 * 109.47019 * 119.99513 * 2 1 3 5 5 C 1.35921 * 117.00023 * 156.10464 * 4 2 1 6 6 C 1.38847 * 120.40241 * 184.98627 * 5 4 2 7 7 N 1.31881 * 120.99811 * 180.02562 * 6 5 4 8 8 C 1.31691 * 121.94111 * 0.02562 * 7 6 5 9 9 C 1.39519 * 120.68852 * 0.02562 * 8 7 6 10 10 C 1.47858 * 120.53052 * 180.02562 * 9 8 7 11 11 O 1.21551 * 119.99908 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99768 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99606 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.52503 * 34.92290 * 13 12 10 15 15 C 1.53046 * 109.49505 * 155.00576 * 13 12 10 16 16 C 1.53041 * 109.53686 * 181.31590 * 15 13 12 17 17 C 1.53201 * 109.31114 * 298.63277 * 16 15 13 18 18 H 1.08997 * 109.58243 * 294.85054 * 17 16 15 19 19 C 1.52997 * 109.58502 * 174.56947 * 17 16 15 20 20 N 1.46924 * 108.77345 * 54.63607 * 17 16 15 21 21 C 1.36940 * 120.62787 * 126.37057 * 20 17 16 22 22 H 1.07997 * 119.99793 * 324.52947 * 21 20 17 23 23 C 1.38818 * 119.99703 * 144.52913 * 21 20 17 24 24 N 1.31617 * 120.00272 * 347.66931 * 23 21 20 25 25 Si 1.86797 * 119.99650 * 167.67560 * 23 21 20 26 26 H 1.48498 * 109.47350 * 89.99996 * 25 23 21 27 27 H 1.48497 * 109.46904 * 209.99930 * 25 23 21 28 28 H 1.48498 * 109.47465 * 329.99461 * 25 23 21 29 29 C 1.46923 * 118.73982 * 306.38977 * 20 17 16 30 30 C 1.38839 * 120.40211 * 5.31465 * 5 4 2 31 31 H 1.09000 * 109.47631 * 300.00368 * 1 2 3 32 32 H 1.09002 * 109.47327 * 60.00738 * 1 2 3 33 33 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47285 * 239.99496 * 2 1 3 35 35 H 1.09000 * 109.47293 * 59.99424 * 3 2 1 36 36 H 1.08998 * 109.46901 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.46541 * 299.99743 * 3 2 1 38 38 H 1.07998 * 119.50587 * 0.02562 * 6 5 4 39 39 H 1.07999 * 119.64968 * 179.97438 * 8 7 6 40 40 H 0.96997 * 119.99873 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.45565 * 61.29462 * 15 13 12 42 42 H 1.09000 * 109.45458 * 301.33482 * 15 13 12 43 43 H 1.08994 * 109.49432 * 178.68206 * 16 15 13 44 44 H 1.09000 * 109.49771 * 58.58021 * 16 15 13 45 45 H 1.08995 * 109.47414 * 60.27659 * 19 17 16 46 46 H 1.09001 * 109.46927 * 180.28843 * 19 17 16 47 47 H 1.09009 * 109.46579 * 300.27756 * 19 17 16 48 48 H 0.96997 * 120.00018 * 179.97438 * 24 23 21 49 49 H 1.09001 * 109.58723 * 293.82311 * 29 20 17 50 50 H 1.09005 * 109.70462 * 173.47124 * 29 20 17 51 51 H 1.07993 * 120.88809 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2559 -1.2048 1.1058 6 6 3.7496 -1.9623 2.1595 7 7 4.9605 -2.4828 2.1129 8 6 5.7533 -2.3111 1.0755 9 6 5.3343 -1.5621 -0.0246 10 6 6.2270 -1.3719 -1.1877 11 8 5.8523 -0.7172 -2.1408 12 7 7.4567 -1.9237 -1.1907 13 6 8.3415 -1.7348 -2.3430 14 1 8.1866 -0.7406 -2.7620 15 6 9.7984 -1.8802 -1.8975 16 6 10.7248 -1.6506 -3.0939 17 6 10.4392 -2.7072 -4.1659 18 1 10.7021 -3.6941 -3.7853 19 6 11.2645 -2.4037 -5.4179 20 7 9.0078 -2.6715 -4.4954 21 6 8.5939 -2.5281 -5.7929 22 1 9.1565 -1.9064 -6.4735 23 6 7.4513 -3.1820 -6.2332 24 7 6.9038 -4.1216 -5.4919 25 14 6.6909 -2.7282 -7.8779 26 1 7.2843 -3.5709 -8.9470 27 1 5.2244 -2.9560 -7.8249 28 1 6.9592 -1.2971 -8.1694 29 6 8.0289 -2.7923 -3.4064 30 6 4.0568 -0.9907 -0.0079 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6765 1.9565 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8901 38 1 3.1328 -2.1279 3.0304 39 1 6.7383 -2.7539 1.0767 40 1 7.7558 -2.4459 -0.4300 41 1 9.9586 -2.8830 -1.5014 42 1 10.0164 -1.1448 -1.1231 43 1 11.7627 -1.7312 -2.7710 44 1 10.5474 -0.6572 -3.5059 45 1 12.3252 -2.4247 -5.1678 46 1 11.0561 -3.1535 -6.1811 47 1 11.0001 -1.4164 -5.7968 48 1 6.1051 -4.5782 -5.7994 49 1 8.0953 -3.7862 -2.9640 50 1 7.0237 -2.6324 -3.7964 51 1 3.7022 -0.4018 -0.8408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071738518.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:53 Heat of formation + Delta-G solvation = -24.584670 kcal Electronic energy + Delta-G solvation = -31217.877844 eV Core-core repulsion = 27117.964992 eV Total energy + Delta-G solvation = -4099.912851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.06956 -39.55588 -38.51541 -37.52963 -34.53136 -33.63922 -32.82989 -32.48809 -31.05646 -30.06877 -29.75630 -27.63747 -26.23595 -25.18726 -24.24852 -24.03838 -22.29229 -21.39940 -21.01813 -20.20729 -19.42011 -18.56689 -17.13724 -17.01677 -16.62956 -16.36515 -15.81913 -15.48662 -15.04298 -14.71750 -14.55548 -14.21440 -13.97826 -13.82917 -13.67437 -13.53618 -13.34900 -13.13251 -12.84334 -12.77418 -12.63403 -12.54117 -12.37296 -12.12855 -11.85844 -11.46214 -11.33303 -11.11761 -11.08993 -10.91692 -10.73337 -10.57857 -10.43953 -10.28597 -10.25542 -9.97607 -9.87777 -9.74955 -9.46051 -9.39432 -8.70933 -8.57916 -8.43193 -6.52901 -5.75886 -3.26594 0.53389 1.02881 2.77712 2.98651 3.31266 3.40305 3.46760 3.49113 3.78460 4.19432 4.39143 4.47850 4.51838 4.55430 4.67129 4.79462 4.81170 4.83415 5.21022 5.23075 5.31792 5.35820 5.38251 5.42936 5.44375 5.49412 5.55134 5.64621 5.69853 5.79527 5.83104 5.88607 5.95865 6.09158 6.11602 6.27601 6.29564 6.39839 6.44954 6.47839 6.62840 6.71298 6.86053 6.96904 7.06333 7.14513 7.27842 7.66172 7.67030 7.78696 7.86994 8.45826 8.53616 9.24226 9.86420 10.45760 11.32145 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003005 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.393645 B = 9314.243417 C =10956.816871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.072 3.928 3 C -0.182 4.182 4 O -0.303 6.303 5 C 0.077 3.923 6 C 0.089 3.911 7 N -0.449 5.449 8 C 0.091 3.909 9 C -0.133 4.133 10 C 0.556 3.444 11 O -0.525 6.525 12 N -0.711 5.711 13 C 0.116 3.884 14 H 0.084 0.916 15 C -0.117 4.117 16 C -0.126 4.126 17 C 0.165 3.835 18 H 0.025 0.975 19 C -0.135 4.135 20 N -0.581 5.581 21 C -0.256 4.256 22 H 0.066 0.934 23 C 0.012 3.988 24 N -0.898 5.898 25 Si 0.899 3.101 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.278 1.278 29 C 0.172 3.828 30 C -0.113 4.113 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.393 0.607 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.037 0.963 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.020 0.980 50 H 0.084 0.916 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 6.864 15.326 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 C -0.239 4.239 4 O -0.216 6.216 5 C 0.029 3.971 6 C -0.070 4.070 7 N -0.157 5.157 8 C -0.068 4.068 9 C -0.139 4.139 10 C 0.341 3.659 11 O -0.401 6.401 12 N -0.361 5.361 13 C 0.011 3.989 14 H 0.102 0.898 15 C -0.155 4.155 16 C -0.166 4.166 17 C 0.058 3.942 18 H 0.043 0.957 19 C -0.192 4.192 20 N -0.305 5.305 21 C -0.386 4.386 22 H 0.083 0.917 23 C -0.187 4.187 24 N -0.541 5.541 25 Si 0.729 3.271 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.203 1.203 29 C 0.045 3.955 30 C -0.140 4.140 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.227 0.773 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.038 0.962 50 H 0.102 0.898 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.747 6.749 15.407 17.775 hybrid contribution -0.592 0.401 -1.367 1.542 sum -6.339 7.151 14.040 16.983 Atomic orbital electron populations 1.21841 0.91974 1.03343 1.03203 1.22569 0.95772 0.92865 0.87226 1.22403 1.02409 0.95713 1.03385 1.86134 1.27343 1.68664 1.39443 1.20044 0.85914 0.95671 0.95500 1.22359 0.92619 0.94557 0.97444 1.67720 1.03498 1.18682 1.25807 1.22859 0.99548 0.95911 0.88441 1.21023 0.95636 1.00564 0.96644 1.17939 0.81842 0.80135 0.86029 1.90817 1.74096 1.39940 1.35267 1.46019 1.15156 1.53418 1.21506 1.22080 0.87551 1.03123 0.86134 0.89796 1.21685 0.94636 1.01057 0.98097 1.22050 0.97257 1.01130 0.96151 1.20509 0.86293 0.94529 0.92846 0.95724 1.21778 0.96672 1.02140 0.98659 1.43938 0.98371 1.85173 1.02998 1.19037 1.09616 1.22694 0.87220 0.91652 1.25237 1.00364 0.95599 0.97537 1.69983 1.22068 1.23918 1.38126 0.86356 0.78497 0.78340 0.83923 1.21328 1.21632 1.20319 1.20992 0.95663 0.92498 0.86321 1.21918 0.93373 1.00264 0.98431 0.91394 0.90240 0.91496 0.90438 0.91323 0.91714 0.90565 0.81649 0.82109 0.77300 0.92126 0.92970 0.92611 0.92088 0.94397 0.91966 0.92881 0.93707 0.96240 0.89756 0.82850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.56 37.16 0.36 -0.69 16 2 C 0.07 0.67 2.85 -26.73 -0.08 0.59 16 3 C -0.18 -1.56 9.16 37.16 0.34 -1.22 16 4 O -0.30 -3.31 9.82 -19.49 -0.19 -3.50 16 5 C 0.08 0.92 6.60 -39.13 -0.26 0.66 16 6 C 0.09 1.01 11.13 -17.31 -0.19 0.81 16 7 N -0.45 -5.58 10.34 -12.80 -0.13 -5.71 16 8 C 0.09 1.12 10.71 -17.13 -0.18 0.93 16 9 C -0.13 -1.91 5.89 -104.84 -0.62 -2.53 16 10 C 0.56 9.68 7.75 -12.32 -0.10 9.59 16 11 O -0.52 -11.33 16.08 5.32 0.09 -11.25 16 12 N -0.71 -11.28 5.03 -54.63 -0.27 -11.56 16 13 C 0.12 2.19 2.61 -67.81 -0.18 2.01 16 14 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.12 -1.82 5.35 -26.69 -0.14 -1.96 16 16 C -0.13 -2.10 5.37 -26.61 -0.14 -2.24 16 17 C 0.16 3.34 3.49 -67.60 -0.24 3.10 16 18 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 19 C -0.13 -2.52 8.01 37.16 0.30 -2.22 16 20 N -0.58 -14.31 2.95 -164.77 -0.49 -14.80 16 21 C -0.26 -6.96 8.40 -15.06 -0.13 -7.08 16 22 H 0.07 1.74 6.43 -52.49 -0.34 1.40 16 23 C 0.01 0.35 4.98 -17.43 -0.09 0.26 16 24 N -0.90 -26.45 11.48 55.49 0.64 -25.81 16 25 Si 0.90 22.16 29.57 -169.99 -5.03 17.13 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.17 4.10 4.81 -3.71 -0.02 4.08 16 30 C -0.11 -1.53 7.83 -38.72 -0.30 -1.83 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.78 6.41 -51.93 -0.33 0.45 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.64 6.82 -51.93 -0.35 0.29 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.16 1.57 6.42 -52.49 -0.34 1.23 16 40 H 0.39 4.83 6.67 -40.82 -0.27 4.56 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 1.26 7.70 -51.93 -0.40 0.86 16 47 H 0.05 1.01 7.40 -51.92 -0.38 0.62 16 48 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 50 H 0.08 2.37 6.50 -51.93 -0.34 2.04 16 51 H 0.15 2.10 5.22 -52.49 -0.27 1.83 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -32.80 402.31 -9.04 -41.84 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.05 Total: 5.33 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -1.66 Total: 2.26 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: -0.26 Total: -57.88 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.11 Total: -14.74 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.80 -9.04 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071738518.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.260 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds