Wall clock time and date at job start Wed Apr 1 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46872 * 2 1 4 4 O 1.42903 * 109.47019 * 119.99513 * 2 1 3 5 5 C 1.35921 * 117.00023 * 156.10464 * 4 2 1 6 6 C 1.38847 * 120.40241 * 184.98627 * 5 4 2 7 7 N 1.31881 * 120.99811 * 180.02562 * 6 5 4 8 8 C 1.31691 * 121.94111 * 0.02562 * 7 6 5 9 9 C 1.39519 * 120.68852 * 0.02562 * 8 7 6 10 10 C 1.47858 * 120.53052 * 180.02562 * 9 8 7 11 11 O 1.21551 * 119.99908 * 180.02562 * 10 9 8 12 12 N 1.34781 * 119.99768 * 359.97438 * 10 9 8 13 13 C 1.46499 * 119.99606 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.52503 * 34.92290 * 13 12 10 15 15 C 1.53046 * 109.49505 * 155.00576 * 13 12 10 16 16 C 1.53041 * 109.53686 * 181.31590 * 15 13 12 17 17 C 1.53201 * 109.31114 * 298.63277 * 16 15 13 18 18 H 1.08997 * 109.58243 * 294.85054 * 17 16 15 19 19 C 1.52997 * 109.58502 * 174.56947 * 17 16 15 20 20 N 1.46924 * 108.77345 * 54.63607 * 17 16 15 21 21 C 1.36940 * 120.62787 * 126.37057 * 20 17 16 22 22 H 1.07997 * 119.99793 * 324.52947 * 21 20 17 23 23 C 1.38818 * 119.99703 * 144.52913 * 21 20 17 24 24 N 1.31617 * 120.00272 * 347.66931 * 23 21 20 25 25 Si 1.86797 * 119.99650 * 167.67560 * 23 21 20 26 26 H 1.48498 * 109.47350 * 89.99996 * 25 23 21 27 27 H 1.48497 * 109.46904 * 209.99930 * 25 23 21 28 28 H 1.48498 * 109.47465 * 329.99461 * 25 23 21 29 29 C 1.46923 * 118.73982 * 306.38977 * 20 17 16 30 30 C 1.38839 * 120.40211 * 5.31465 * 5 4 2 31 31 H 1.09000 * 109.47631 * 300.00368 * 1 2 3 32 32 H 1.09002 * 109.47327 * 60.00738 * 1 2 3 33 33 H 1.08999 * 109.46880 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47285 * 239.99496 * 2 1 3 35 35 H 1.09000 * 109.47293 * 59.99424 * 3 2 1 36 36 H 1.08998 * 109.46901 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.46541 * 299.99743 * 3 2 1 38 38 H 1.07998 * 119.50587 * 0.02562 * 6 5 4 39 39 H 1.07999 * 119.64968 * 179.97438 * 8 7 6 40 40 H 0.96997 * 119.99873 * 0.02562 * 12 10 9 41 41 H 1.09000 * 109.45565 * 61.29462 * 15 13 12 42 42 H 1.09000 * 109.45458 * 301.33482 * 15 13 12 43 43 H 1.08994 * 109.49432 * 178.68206 * 16 15 13 44 44 H 1.09000 * 109.49771 * 58.58021 * 16 15 13 45 45 H 1.08995 * 109.47414 * 60.27659 * 19 17 16 46 46 H 1.09001 * 109.46927 * 180.28843 * 19 17 16 47 47 H 1.09009 * 109.46579 * 300.27756 * 19 17 16 48 48 H 0.96997 * 120.00018 * 179.97438 * 24 23 21 49 49 H 1.09001 * 109.58723 * 293.82311 * 29 20 17 50 50 H 1.09005 * 109.70462 * 173.47124 * 29 20 17 51 51 H 1.07993 * 120.88809 * 359.97438 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 3.2559 -1.2048 1.1058 6 6 3.7496 -1.9623 2.1595 7 7 4.9605 -2.4828 2.1129 8 6 5.7533 -2.3111 1.0755 9 6 5.3343 -1.5621 -0.0246 10 6 6.2270 -1.3719 -1.1877 11 8 5.8523 -0.7172 -2.1408 12 7 7.4567 -1.9237 -1.1907 13 6 8.3415 -1.7348 -2.3430 14 1 8.1866 -0.7406 -2.7620 15 6 9.7984 -1.8802 -1.8975 16 6 10.7248 -1.6506 -3.0939 17 6 10.4392 -2.7072 -4.1659 18 1 10.7021 -3.6941 -3.7853 19 6 11.2645 -2.4037 -5.4179 20 7 9.0078 -2.6715 -4.4954 21 6 8.5939 -2.5281 -5.7929 22 1 9.1565 -1.9064 -6.4735 23 6 7.4513 -3.1820 -6.2332 24 7 6.9038 -4.1216 -5.4919 25 14 6.6909 -2.7282 -7.8779 26 1 7.2843 -3.5709 -8.9470 27 1 5.2244 -2.9560 -7.8249 28 1 6.9592 -1.2971 -8.1694 29 6 8.0289 -2.7923 -3.4064 30 6 4.0568 -0.9907 -0.0079 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6765 1.9565 0.8899 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8901 38 1 3.1328 -2.1279 3.0304 39 1 6.7383 -2.7539 1.0767 40 1 7.7558 -2.4459 -0.4300 41 1 9.9586 -2.8830 -1.5014 42 1 10.0164 -1.1448 -1.1231 43 1 11.7627 -1.7312 -2.7710 44 1 10.5474 -0.6572 -3.5059 45 1 12.3252 -2.4247 -5.1678 46 1 11.0561 -3.1535 -6.1811 47 1 11.0001 -1.4164 -5.7968 48 1 6.1051 -4.5782 -5.7994 49 1 8.0953 -3.7862 -2.9640 50 1 7.0237 -2.6324 -3.7964 51 1 3.7022 -0.4018 -0.8408 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071738518.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:52 Heat of formation + Delta-G solvation = -46.226043 kcal Electronic energy + Delta-G solvation = -31218.816284 eV Core-core repulsion = 27117.964992 eV Total energy + Delta-G solvation = -4100.851292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.09461 -40.85185 -39.58978 -39.05179 -36.11763 -34.68076 -34.38946 -33.62437 -32.36288 -31.81326 -31.00986 -28.28868 -27.83026 -26.94370 -25.49854 -25.00522 -23.99554 -22.43378 -22.25069 -21.61763 -21.02554 -19.69773 -18.38479 -18.10996 -17.96094 -17.76428 -17.15317 -16.69709 -16.60470 -16.07005 -15.77143 -15.54602 -15.40957 -15.17956 -14.99929 -14.97099 -14.60824 -14.39596 -14.16294 -14.00355 -13.58837 -13.47964 -13.39167 -13.16376 -13.06891 -12.90605 -12.78562 -12.71485 -12.56262 -12.36070 -12.16840 -12.08422 -12.00240 -11.83801 -11.72160 -11.54220 -11.29278 -11.14072 -10.96174 -10.65245 -10.56638 -10.16055 -9.59226 -8.54564 -7.86902 -5.39906 -0.53194 0.04039 1.39413 1.42525 1.50505 1.72619 1.92083 2.02653 2.48461 2.69238 3.20870 3.30463 3.44860 3.62549 3.66939 3.71911 3.79034 3.81255 3.89668 3.95622 4.05744 4.10001 4.25272 4.33329 4.39389 4.59983 4.61505 4.67609 4.71611 4.72631 4.78398 4.80932 4.82348 4.85257 4.89998 5.02347 5.08285 5.12987 5.18639 5.20159 5.22006 5.28837 5.31675 5.40340 5.55936 5.59228 5.70303 5.76240 6.07679 6.41424 6.49243 6.69389 7.12367 7.18169 7.87746 8.40549 9.17660 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003005 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.393645 B = 9314.243417 C =10956.816871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 C -0.179 4.179 4 O -0.302 6.302 5 C 0.077 3.923 6 C 0.100 3.900 7 N -0.455 5.455 8 C 0.100 3.900 9 C -0.152 4.152 10 C 0.554 3.446 11 O -0.577 6.577 12 N -0.697 5.697 13 C 0.131 3.869 14 H 0.055 0.945 15 C -0.108 4.108 16 C -0.118 4.118 17 C 0.153 3.847 18 H 0.021 0.979 19 C -0.128 4.128 20 N -0.601 5.601 21 C -0.254 4.254 22 H 0.068 0.932 23 C -0.046 4.046 24 N -0.932 5.932 25 Si 0.955 3.045 26 H -0.277 1.277 27 H -0.299 1.299 28 H -0.271 1.271 29 C 0.185 3.815 30 C -0.122 4.122 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.197 0.803 39 H 0.188 0.812 40 H 0.413 0.587 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.045 0.955 48 H 0.245 0.755 49 H 0.001 0.999 50 H 0.030 0.970 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 7.497 17.672 19.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.009 3.991 3 C -0.236 4.236 4 O -0.215 6.215 5 C 0.029 3.971 6 C -0.058 4.058 7 N -0.164 5.164 8 C -0.057 4.057 9 C -0.158 4.158 10 C 0.341 3.659 11 O -0.458 6.458 12 N -0.348 5.348 13 C 0.025 3.975 14 H 0.073 0.927 15 C -0.146 4.146 16 C -0.157 4.157 17 C 0.048 3.952 18 H 0.039 0.961 19 C -0.186 4.186 20 N -0.326 5.326 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.242 4.242 24 N -0.577 5.577 25 Si 0.784 3.216 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.196 1.196 29 C 0.058 3.942 30 C -0.149 4.149 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.214 0.786 39 H 0.204 0.796 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.019 0.981 50 H 0.049 0.951 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.584 7.379 17.790 19.797 hybrid contribution -0.959 0.212 -2.045 2.268 sum -5.543 7.591 15.745 18.337 Atomic orbital electron populations 1.21857 0.89980 1.03670 1.04408 1.22765 0.97267 0.92889 0.86195 1.22382 1.01198 0.95504 1.04494 1.86136 1.26635 1.68646 1.40095 1.20094 0.86164 0.95794 0.95063 1.22900 0.92399 0.92769 0.97769 1.67844 1.03954 1.19022 1.25536 1.23177 1.00477 0.94673 0.87399 1.20795 0.95624 1.02926 0.96415 1.18449 0.82181 0.79049 0.86209 1.90786 1.75140 1.42362 1.37483 1.45799 1.14500 1.53280 1.21271 1.21605 0.90501 0.99424 0.85933 0.92657 1.21668 0.91170 1.03166 0.98613 1.21954 0.99737 0.98968 0.95054 1.20821 0.83692 0.95768 0.94933 0.96098 1.21712 0.98890 1.00693 0.97255 1.44230 1.00569 1.85401 1.02373 1.19351 1.09206 1.21429 0.88461 0.91407 1.25945 1.01413 0.96151 1.00688 1.70136 1.22372 1.25514 1.39717 0.85458 0.77041 0.78368 0.80770 1.20365 1.22569 1.19614 1.20673 0.93155 0.93067 0.87341 1.21944 0.93639 1.00402 0.98934 0.90384 0.88828 0.91613 0.91936 0.90199 0.93558 0.89450 0.78587 0.79573 0.74853 0.90558 0.89350 0.88525 0.92905 0.90317 0.94480 0.93624 0.94588 0.98109 0.95116 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.56 71.98 0.69 -1.18 16 2 C 0.06 1.20 2.85 30.60 0.09 1.28 16 3 C -0.18 -3.04 9.16 71.98 0.66 -2.38 16 4 O -0.30 -6.33 9.82 -92.66 -0.91 -7.24 16 5 C 0.08 1.79 6.60 22.56 0.15 1.94 16 6 C 0.10 2.06 11.13 84.83 0.94 3.01 16 7 N -0.46 -10.31 10.34 -194.40 -2.01 -12.32 16 8 C 0.10 2.32 10.71 85.02 0.91 3.23 16 9 C -0.15 -4.41 5.89 -20.01 -0.12 -4.53 16 10 C 0.55 20.03 7.75 86.79 0.67 20.71 16 11 O -0.58 -26.68 16.08 -3.88 -0.06 -26.74 16 12 N -0.70 -22.08 5.03 -445.01 -2.24 -24.32 16 13 C 0.13 4.98 2.61 45.07 0.12 5.10 16 14 H 0.06 2.44 7.58 -2.39 -0.02 2.43 16 15 C -0.11 -3.07 5.35 30.62 0.16 -2.91 16 16 C -0.12 -3.57 5.37 30.68 0.16 -3.40 16 17 C 0.15 6.04 3.49 44.98 0.16 6.19 16 18 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 19 C -0.13 -4.61 8.01 71.98 0.58 -4.03 16 20 N -0.60 -30.32 2.95 -675.22 -1.99 -32.31 16 21 C -0.25 -14.22 8.40 84.03 0.71 -13.52 16 22 H 0.07 3.69 6.43 -2.91 -0.02 3.67 16 23 C -0.05 -2.69 4.98 84.86 0.42 -2.27 16 24 N -0.93 -57.74 11.48 21.65 0.25 -57.49 16 25 Si 0.96 47.21 29.57 68.60 2.03 49.24 16 26 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 27 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 28 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 29 C 0.18 9.16 4.81 86.36 0.42 9.58 16 30 C -0.12 -3.41 7.83 22.83 0.18 -3.23 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.34 6.41 -2.39 -0.02 1.33 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 0.95 6.82 -2.39 -0.02 0.94 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.19 3.15 6.42 -2.91 -0.02 3.13 16 40 H 0.41 9.46 6.67 -92.71 -0.62 8.84 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.04 1.49 7.70 -2.39 -0.02 1.47 16 47 H 0.04 1.68 7.40 -2.38 -0.02 1.67 16 48 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 49 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.03 1.83 6.50 -2.38 -0.02 1.82 16 51 H 0.14 4.22 5.22 -2.91 -0.02 4.21 16 Total: -1.00 -76.70 402.31 2.28 -74.42 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.32 Total: 23.16 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.90 Total: 13.59 kcal Atomic # 7 Polarization: -120.44 SS G_CDS: -6.00 Total: -126.44 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.97 Total: -33.98 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.70 2.28 -74.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071738518.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.191 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds