Wall clock time and date at job start Wed Apr 1 2020 05:04:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52990 * 109.47304 * 2 1
4 4 O 1.42897 * 109.47244 * 179.97438 * 3 2 1
5 5 C 1.35649 * 117.00012 * 179.97438 * 4 3 2
6 6 C 1.39337 * 120.54308 * 0.02562 * 5 4 3
7 7 C 1.38300 * 118.44181 * 179.97438 * 6 5 4
8 8 C 1.38769 * 119.44609 * 0.02562 * 7 6 5
9 9 N 1.31377 * 121.06592 * 359.71325 * 8 7 6
10 10 C 1.32857 * 121.69123 * 0.57888 * 9 8 7
11 11 C 1.47834 * 119.78352 * 179.70286 * 10 9 8
12 12 O 1.21547 * 120.00648 * 179.72431 * 11 10 9
13 13 N 1.34780 * 119.99635 * 359.72801 * 11 10 9
14 14 C 1.46500 * 120.00047 * 179.97438 * 13 11 10
15 15 H 1.08995 * 109.49900 * 34.93530 * 14 13 11
16 16 C 1.53041 * 109.49925 * 155.00121 * 14 13 11
17 17 C 1.53039 * 109.53692 * 58.58494 * 16 14 13
18 18 C 1.53194 * 109.31505 * 61.36941 * 17 16 14
19 19 H 1.09001 * 109.58684 * 65.29017 * 18 17 16
20 20 C 1.52993 * 109.58861 * 185.57753 * 18 17 16
21 21 N 1.46930 * 108.77421 * 305.36344 * 18 17 16
22 22 C 1.36936 * 120.63224 * 233.61192 * 21 18 17
23 23 H 1.08001 * 119.99956 * 29.00086 * 22 21 18
24 24 C 1.38809 * 119.99901 * 209.00834 * 22 21 18
25 25 N 1.31617 * 120.00017 * 15.03305 * 24 22 21
26 26 Si 1.86798 * 119.99825 * 195.02477 * 24 22 21
27 27 H 1.48502 * 109.47271 * 0.02562 * 26 24 22
28 28 H 1.48510 * 109.46997 * 120.00317 * 26 24 22
29 29 H 1.48497 * 109.47574 * 240.00138 * 26 24 22
30 30 C 1.46930 * 118.73677 * 53.60178 * 21 18 17
31 31 H 1.09006 * 109.46910 * 300.00011 * 1 2 3
32 32 H 1.08996 * 109.46977 * 60.00179 * 1 2 3
33 33 H 1.09002 * 109.47361 * 180.02562 * 1 2 3
34 34 H 1.09003 * 109.46613 * 239.99555 * 2 1 3
35 35 H 1.09008 * 109.46840 * 120.00268 * 2 1 3
36 36 H 1.09006 * 109.47147 * 60.00134 * 3 2 1
37 37 H 1.09003 * 109.47026 * 300.00238 * 3 2 1
38 38 H 1.08004 * 120.78144 * 359.95325 * 6 5 4
39 39 H 1.08002 * 120.27581 * 180.02562 * 7 6 5
40 40 H 1.08001 * 119.46673 * 179.97438 * 8 7 6
41 41 H 0.97003 * 120.00281 * 0.02562 * 13 11 10
42 42 H 1.09003 * 109.45416 * 298.56589 * 16 14 13
43 43 H 1.08994 * 109.45051 * 178.60358 * 16 14 13
44 44 H 1.09001 * 109.50040 * 301.41260 * 17 16 14
45 45 H 1.09004 * 109.49635 * 181.31866 * 17 16 14
46 46 H 1.08995 * 109.47178 * 59.99604 * 20 18 17
47 47 H 1.09006 * 109.47193 * 299.99548 * 20 18 17
48 48 H 1.09000 * 109.47442 * 179.97438 * 20 18 17
49 49 H 0.96997 * 119.99877 * 180.02562 * 25 24 22
50 50 H 1.09000 * 109.58487 * 186.60741 * 30 21 18
51 51 H 1.09000 * 109.58126 * 66.18508 * 30 21 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 8 3.4690 1.4424 0.0006
5 6 4.0849 2.6510 0.0001
6 6 3.3371 3.8267 -0.0003
7 6 4.0098 5.0351 -0.0003
8 6 5.3974 5.0435 -0.0002
9 7 6.0821 3.9222 0.0053
10 6 5.4811 2.7374 -0.0003
11 6 6.2932 1.5021 -0.0003
12 8 5.7475 0.4160 -0.0003
13 7 7.6387 1.5802 -0.0002
14 6 8.4435 0.3561 0.0004
15 1 7.9396 -0.4109 -0.5878
16 6 9.8167 0.6473 -0.6093
17 6 10.5112 1.7479 0.1960
18 6 10.7137 1.2701 1.6374
19 1 11.4066 0.4287 1.6495
20 6 11.2800 2.4132 2.4819
21 7 9.4156 0.8507 2.1833
22 6 8.9538 1.3710 3.3627
23 1 9.2442 2.3666 3.6642
24 6 8.1125 0.6188 4.1709
25 7 7.9920 -0.6764 3.9703
26 14 7.1515 1.4448 5.5434
27 1 7.4603 2.8972 5.5593
28 1 5.6969 1.2509 5.3152
29 1 7.5326 0.8429 6.8463
30 6 8.6225 -0.1375 1.4395
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 -1.0277 0.0005
34 1 1.8933 -0.5139 -0.8900
35 1 1.8934 -0.5139 0.8900
36 1 1.6768 1.9563 0.8900
37 1 1.6767 1.9562 -0.8900
38 1 2.2575 3.7952 -0.0011
39 1 3.4596 5.9645 -0.0002
40 1 5.9230 5.9869 -0.0006
41 1 8.0742 2.4469 0.0003
42 1 9.6935 0.9752 -1.6415
43 1 10.4236 -0.2578 -0.5858
44 1 9.8930 2.6456 0.1937
45 1 11.4792 1.9712 -0.2526
46 1 10.5835 3.2515 2.4725
47 1 12.2369 2.7313 2.0679
48 1 11.4229 2.0714 3.5070
49 1 7.4038 -1.2020 4.5348
50 1 7.6462 -0.2518 1.9106
51 1 9.1429 -1.0952 1.4353
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001071796236.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:04:38
Heat of formation + Delta-G solvation = -19.778048 kcal
Electronic energy + Delta-G solvation = -32371.155092 eV
Core-core repulsion = 28271.450672 eV
Total energy + Delta-G solvation = -4099.704421 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.21 seconds
Orbital eigenvalues (eV)
-40.79214 -39.02095 -38.27091 -37.24978 -34.17519 -33.86203 -32.66885 -32.36742
-30.72664 -30.09886 -29.70935 -26.82344 -26.17593 -25.00514 -24.36667 -23.01608
-22.05747 -21.70520 -20.79672 -20.17431 -18.56105 -18.31745 -17.56202 -16.87170
-16.42771 -16.13376 -15.43891 -15.01000 -14.90602 -14.66951 -14.41951 -14.00446
-13.97126 -13.75520 -13.71449 -13.30593 -13.20411 -12.93798 -12.74646 -12.60214
-12.36574 -12.26546 -12.05898 -11.76238 -11.70684 -11.11443 -11.11228 -11.06600
-10.86356 -10.78971 -10.75463 -10.63806 -10.26969 -10.21398 -9.87608 -9.85360
-9.83554 -9.43278 -9.32871 -9.13951 -8.42844 -8.34865 -8.10236 -6.48620
-5.64340 -3.07424 0.78519 1.24044 3.04597 3.22202 3.43534 3.50909
3.52244 3.73034 4.17431 4.42352 4.53326 4.59022 4.70276 4.72244
4.77049 4.98247 5.04206 5.08834 5.20471 5.28688 5.42887 5.45466
5.47646 5.53618 5.61242 5.63694 5.72524 5.78986 5.89725 5.91392
5.93333 6.08041 6.13739 6.24245 6.26355 6.36584 6.44310 6.45965
6.55622 6.65324 6.73695 6.82689 7.04589 7.15555 7.26066 7.26336
7.53386 7.79795 7.85635 7.94871 8.36464 8.60268 8.98833 9.34613
9.99387 10.55239 11.43573
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.009485 B = 0.004091 C = 0.003730
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2951.306394 B = 6843.272001 C = 7505.145942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.124 4.124
3 C 0.051 3.949
4 O -0.267 6.267
5 C 0.136 3.864
6 C -0.180 4.180
7 C -0.115 4.115
8 C 0.054 3.946
9 N -0.416 5.416
10 C 0.058 3.942
11 C 0.568 3.432
12 O -0.523 6.523
13 N -0.681 5.681
14 C 0.118 3.882
15 H 0.075 0.925
16 C -0.118 4.118
17 C -0.131 4.131
18 C 0.166 3.834
19 H 0.024 0.976
20 C -0.136 4.136
21 N -0.582 5.582
22 C -0.243 4.243
23 H 0.068 0.932
24 C 0.005 3.995
25 N -0.900 5.900
26 Si 0.892 3.108
27 H -0.279 1.279
28 H -0.291 1.291
29 H -0.291 1.291
30 C 0.162 3.838
31 H 0.056 0.944
32 H 0.055 0.945
33 H 0.064 0.936
34 H 0.076 0.924
35 H 0.078 0.922
36 H 0.061 0.939
37 H 0.060 0.940
38 H 0.142 0.858
39 H 0.139 0.861
40 H 0.162 0.838
41 H 0.404 0.596
42 H 0.051 0.949
43 H 0.069 0.931
44 H 0.057 0.943
45 H 0.052 0.948
46 H 0.052 0.948
47 H 0.036 0.964
48 H 0.059 0.941
49 H 0.251 0.749
50 H 0.098 0.902
51 H 0.024 0.976
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.507 9.272 -11.725 17.715
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.161 4.161
3 C -0.025 4.025
4 O -0.177 6.177
5 C 0.085 3.915
6 C -0.206 4.206
7 C -0.135 4.135
8 C -0.106 4.106
9 N -0.128 5.128
10 C -0.081 4.081
11 C 0.351 3.649
12 O -0.398 6.398
13 N -0.332 5.332
14 C 0.012 3.988
15 H 0.093 0.907
16 C -0.156 4.156
17 C -0.171 4.171
18 C 0.059 3.941
19 H 0.042 0.958
20 C -0.193 4.193
21 N -0.305 5.305
22 C -0.373 4.373
23 H 0.085 0.915
24 C -0.194 4.194
25 N -0.544 5.544
26 Si 0.723 3.277
27 H -0.204 1.204
28 H -0.218 1.218
29 H -0.218 1.218
30 C 0.035 3.965
31 H 0.075 0.925
32 H 0.074 0.926
33 H 0.083 0.917
34 H 0.095 0.905
35 H 0.097 0.903
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.160 0.840
39 H 0.157 0.843
40 H 0.179 0.821
41 H 0.240 0.760
42 H 0.069 0.931
43 H 0.088 0.912
44 H 0.076 0.924
45 H 0.070 0.930
46 H 0.071 0.929
47 H 0.055 0.945
48 H 0.078 0.922
49 H 0.061 0.939
50 H 0.116 0.884
51 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -8.977 8.117 -11.602 16.766
hybrid contribution -1.560 1.110 0.894 2.113
sum -10.538 9.227 -10.709 17.631
Atomic orbital electron populations
1.21690 0.94456 1.02503 1.01841 1.21455 0.95497 0.94618 1.04542
1.22996 0.79058 0.99468 1.00942 1.86448 1.20409 1.24571 1.86224
1.20036 0.92416 0.85606 0.93408 1.21695 1.00809 0.91963 1.06173
1.22127 0.95816 0.98172 0.97426 1.22667 0.91287 0.96463 1.00196
1.67658 1.39836 0.97385 1.07892 1.20969 0.88638 0.93206 1.05313
1.17458 0.82643 0.86860 0.77924 1.90802 1.71750 1.27353 1.49934
1.45658 1.04828 1.10420 1.72322 1.21802 0.89718 0.86349 1.00953
0.90692 1.21679 0.96142 0.99806 0.97938 1.22076 0.98948 0.98060
0.98003 1.20449 0.88511 0.94519 0.90575 0.95848 1.21795 0.98285
0.98613 1.00610 1.44034 1.14874 1.49099 1.22512 1.19119 1.25567
0.96626 0.95956 0.91480 1.25006 1.01905 0.94840 0.97601 1.69988
1.39746 1.04229 1.40482 0.86373 0.80226 0.78923 0.82211 1.20392
1.21840 1.21811 1.21196 0.98714 0.89876 0.86678 0.92507 0.92607
0.91690 0.90518 0.90282 0.92109 0.92200 0.84037 0.84314 0.82064
0.75996 0.93066 0.91187 0.92387 0.92960 0.92873 0.94483 0.92165
0.93861 0.88437 0.95755
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16
2 C -0.12 -1.37 6.30 -26.73 -0.17 -1.54 16
3 C 0.05 0.60 4.76 37.15 0.18 0.78 16
4 O -0.27 -4.57 8.20 -40.60 -0.33 -4.90 16
5 C 0.14 2.25 6.71 -38.56 -0.26 1.99 16
6 C -0.18 -2.19 9.13 -39.15 -0.36 -2.54 16
7 C -0.12 -1.22 10.10 -39.36 -0.40 -1.62 16
8 C 0.05 0.67 11.17 -17.55 -0.20 0.48 16
9 N -0.42 -6.86 9.54 -9.71 -0.09 -6.95 16
10 C 0.06 1.09 6.76 -82.88 -0.56 0.53 16
11 C 0.57 12.24 7.77 -12.33 -0.10 12.14 16
12 O -0.52 -12.69 14.80 -16.63 -0.25 -12.93 16
13 N -0.68 -13.81 4.90 -54.64 -0.27 -14.07 16
14 C 0.12 2.41 2.81 -67.81 -0.19 2.22 16
15 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16
16 C -0.12 -1.99 5.59 -26.69 -0.15 -2.14 16
17 C -0.13 -2.25 5.20 -26.61 -0.14 -2.39 16
18 C 0.17 3.42 3.50 -67.60 -0.24 3.19 16
19 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
20 C -0.14 -2.57 7.94 37.15 0.30 -2.27 16
21 N -0.58 -14.44 2.91 -164.77 -0.48 -14.92 16
22 C -0.24 -6.67 8.61 -15.06 -0.13 -6.80 16
23 H 0.07 1.82 6.20 -52.49 -0.33 1.49 16
24 C 0.00 0.14 4.96 -17.43 -0.09 0.06 16
25 N -0.90 -27.23 11.14 55.49 0.62 -26.61 16
26 Si 0.89 22.87 29.58 -169.99 -5.03 17.85 16
27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
28 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16
29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16
30 C 0.16 4.04 4.89 -3.71 -0.02 4.02 16
31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16
35 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16
36 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16
37 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16
38 H 0.14 1.27 6.46 -52.48 -0.34 0.93 16
39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16
40 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16
41 H 0.40 7.75 6.10 -40.82 -0.25 7.50 16
42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16
44 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16
45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
46 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16
47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
48 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16
49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16
50 H 0.10 2.87 6.06 -51.93 -0.31 2.55 16
51 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16
LS Contribution 401.74 15.07 6.05 6.05
Total: -1.00 -34.15 401.74 -10.08 -44.23
By element:
Atomic # 1 Polarization: 15.13 SS G_CDS: -8.17 Total: 6.96 kcal
Atomic # 6 Polarization: 7.43 SS G_CDS: -2.14 Total: 5.29 kcal
Atomic # 7 Polarization: -62.33 SS G_CDS: -0.22 Total: -62.55 kcal
Atomic # 8 Polarization: -17.26 SS G_CDS: -0.58 Total: -17.83 kcal
Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -34.15 -10.08 -44.23 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001071796236.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.457 kcal
(2) G-P(sol) polarization free energy of solvation -34.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.694 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.778 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.21 seconds