Wall clock time and date at job start Wed Apr 1 2020 05:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47304 * 2 1 4 4 O 1.42897 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.35649 * 117.00012 * 179.97438 * 4 3 2 6 6 C 1.39337 * 120.54308 * 0.02562 * 5 4 3 7 7 C 1.38300 * 118.44181 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44609 * 0.02562 * 7 6 5 9 9 N 1.31377 * 121.06592 * 359.71325 * 8 7 6 10 10 C 1.32857 * 121.69123 * 0.57888 * 9 8 7 11 11 C 1.47834 * 119.78352 * 179.70286 * 10 9 8 12 12 O 1.21547 * 120.00648 * 179.72431 * 11 10 9 13 13 N 1.34780 * 119.99635 * 359.72801 * 11 10 9 14 14 C 1.46500 * 120.00047 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.49900 * 34.93530 * 14 13 11 16 16 C 1.53041 * 109.49925 * 155.00121 * 14 13 11 17 17 C 1.53039 * 109.53692 * 58.58494 * 16 14 13 18 18 C 1.53194 * 109.31505 * 61.36941 * 17 16 14 19 19 H 1.09001 * 109.58684 * 65.29017 * 18 17 16 20 20 C 1.52993 * 109.58861 * 185.57753 * 18 17 16 21 21 N 1.46930 * 108.77421 * 305.36344 * 18 17 16 22 22 C 1.36936 * 120.63224 * 233.61192 * 21 18 17 23 23 H 1.08001 * 119.99956 * 29.00086 * 22 21 18 24 24 C 1.38809 * 119.99901 * 209.00834 * 22 21 18 25 25 N 1.31617 * 120.00017 * 15.03305 * 24 22 21 26 26 Si 1.86798 * 119.99825 * 195.02477 * 24 22 21 27 27 H 1.48502 * 109.47271 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46997 * 120.00317 * 26 24 22 29 29 H 1.48497 * 109.47574 * 240.00138 * 26 24 22 30 30 C 1.46930 * 118.73677 * 53.60178 * 21 18 17 31 31 H 1.09006 * 109.46910 * 300.00011 * 1 2 3 32 32 H 1.08996 * 109.46977 * 60.00179 * 1 2 3 33 33 H 1.09002 * 109.47361 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46613 * 239.99555 * 2 1 3 35 35 H 1.09008 * 109.46840 * 120.00268 * 2 1 3 36 36 H 1.09006 * 109.47147 * 60.00134 * 3 2 1 37 37 H 1.09003 * 109.47026 * 300.00238 * 3 2 1 38 38 H 1.08004 * 120.78144 * 359.95325 * 6 5 4 39 39 H 1.08002 * 120.27581 * 180.02562 * 7 6 5 40 40 H 1.08001 * 119.46673 * 179.97438 * 8 7 6 41 41 H 0.97003 * 120.00281 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.45416 * 298.56589 * 16 14 13 43 43 H 1.08994 * 109.45051 * 178.60358 * 16 14 13 44 44 H 1.09001 * 109.50040 * 301.41260 * 17 16 14 45 45 H 1.09004 * 109.49635 * 181.31866 * 17 16 14 46 46 H 1.08995 * 109.47178 * 59.99604 * 20 18 17 47 47 H 1.09006 * 109.47193 * 299.99548 * 20 18 17 48 48 H 1.09000 * 109.47442 * 179.97438 * 20 18 17 49 49 H 0.96997 * 119.99877 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.58487 * 186.60741 * 30 21 18 51 51 H 1.09000 * 109.58126 * 66.18508 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0849 2.6510 0.0001 6 6 3.3371 3.8267 -0.0003 7 6 4.0098 5.0351 -0.0003 8 6 5.3974 5.0435 -0.0002 9 7 6.0821 3.9222 0.0053 10 6 5.4811 2.7374 -0.0003 11 6 6.2932 1.5021 -0.0003 12 8 5.7475 0.4160 -0.0003 13 7 7.6387 1.5802 -0.0002 14 6 8.4435 0.3561 0.0004 15 1 7.9396 -0.4109 -0.5878 16 6 9.8167 0.6473 -0.6093 17 6 10.5112 1.7479 0.1960 18 6 10.7137 1.2701 1.6374 19 1 11.4066 0.4287 1.6495 20 6 11.2800 2.4132 2.4819 21 7 9.4156 0.8507 2.1833 22 6 8.9538 1.3710 3.3627 23 1 9.2442 2.3666 3.6642 24 6 8.1125 0.6188 4.1709 25 7 7.9920 -0.6764 3.9703 26 14 7.1515 1.4448 5.5434 27 1 7.4603 2.8972 5.5593 28 1 5.6969 1.2509 5.3152 29 1 7.5326 0.8429 6.8463 30 6 8.6225 -0.1375 1.4395 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9562 -0.8900 38 1 2.2575 3.7952 -0.0011 39 1 3.4596 5.9645 -0.0002 40 1 5.9230 5.9869 -0.0006 41 1 8.0742 2.4469 0.0003 42 1 9.6935 0.9752 -1.6415 43 1 10.4236 -0.2578 -0.5858 44 1 9.8930 2.6456 0.1937 45 1 11.4792 1.9712 -0.2526 46 1 10.5835 3.2515 2.4725 47 1 12.2369 2.7313 2.0679 48 1 11.4229 2.0714 3.5070 49 1 7.4038 -1.2020 4.5348 50 1 7.6462 -0.2518 1.9106 51 1 9.1429 -1.0952 1.4353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071796236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:38 Heat of formation + Delta-G solvation = -19.778048 kcal Electronic energy + Delta-G solvation = -32371.155092 eV Core-core repulsion = 28271.450672 eV Total energy + Delta-G solvation = -4099.704421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.79214 -39.02095 -38.27091 -37.24978 -34.17519 -33.86203 -32.66885 -32.36742 -30.72664 -30.09886 -29.70935 -26.82344 -26.17593 -25.00514 -24.36667 -23.01608 -22.05747 -21.70520 -20.79672 -20.17431 -18.56105 -18.31745 -17.56202 -16.87170 -16.42771 -16.13376 -15.43891 -15.01000 -14.90602 -14.66951 -14.41951 -14.00446 -13.97126 -13.75520 -13.71449 -13.30593 -13.20411 -12.93798 -12.74646 -12.60214 -12.36574 -12.26546 -12.05898 -11.76238 -11.70684 -11.11443 -11.11228 -11.06600 -10.86356 -10.78971 -10.75463 -10.63806 -10.26969 -10.21398 -9.87608 -9.85360 -9.83554 -9.43278 -9.32871 -9.13951 -8.42844 -8.34865 -8.10236 -6.48620 -5.64340 -3.07424 0.78519 1.24044 3.04597 3.22202 3.43534 3.50909 3.52244 3.73034 4.17431 4.42352 4.53326 4.59022 4.70276 4.72244 4.77049 4.98247 5.04206 5.08834 5.20471 5.28688 5.42887 5.45466 5.47646 5.53618 5.61242 5.63694 5.72524 5.78986 5.89725 5.91392 5.93333 6.08041 6.13739 6.24245 6.26355 6.36584 6.44310 6.45965 6.55622 6.65324 6.73695 6.82689 7.04589 7.15555 7.26066 7.26336 7.53386 7.79795 7.85635 7.94871 8.36464 8.60268 8.98833 9.34613 9.99387 10.55239 11.43573 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.004091 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.306394 B = 6843.272001 C = 7505.145942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.124 4.124 3 C 0.051 3.949 4 O -0.267 6.267 5 C 0.136 3.864 6 C -0.180 4.180 7 C -0.115 4.115 8 C 0.054 3.946 9 N -0.416 5.416 10 C 0.058 3.942 11 C 0.568 3.432 12 O -0.523 6.523 13 N -0.681 5.681 14 C 0.118 3.882 15 H 0.075 0.925 16 C -0.118 4.118 17 C -0.131 4.131 18 C 0.166 3.834 19 H 0.024 0.976 20 C -0.136 4.136 21 N -0.582 5.582 22 C -0.243 4.243 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.900 5.900 26 Si 0.892 3.108 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.162 3.838 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.162 0.838 41 H 0.404 0.596 42 H 0.051 0.949 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.036 0.964 48 H 0.059 0.941 49 H 0.251 0.749 50 H 0.098 0.902 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 9.272 -11.725 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.025 4.025 4 O -0.177 6.177 5 C 0.085 3.915 6 C -0.206 4.206 7 C -0.135 4.135 8 C -0.106 4.106 9 N -0.128 5.128 10 C -0.081 4.081 11 C 0.351 3.649 12 O -0.398 6.398 13 N -0.332 5.332 14 C 0.012 3.988 15 H 0.093 0.907 16 C -0.156 4.156 17 C -0.171 4.171 18 C 0.059 3.941 19 H 0.042 0.958 20 C -0.193 4.193 21 N -0.305 5.305 22 C -0.373 4.373 23 H 0.085 0.915 24 C -0.194 4.194 25 N -0.544 5.544 26 Si 0.723 3.277 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.218 1.218 30 C 0.035 3.965 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.179 0.821 41 H 0.240 0.760 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.055 0.945 48 H 0.078 0.922 49 H 0.061 0.939 50 H 0.116 0.884 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.977 8.117 -11.602 16.766 hybrid contribution -1.560 1.110 0.894 2.113 sum -10.538 9.227 -10.709 17.631 Atomic orbital electron populations 1.21690 0.94456 1.02503 1.01841 1.21455 0.95497 0.94618 1.04542 1.22996 0.79058 0.99468 1.00942 1.86448 1.20409 1.24571 1.86224 1.20036 0.92416 0.85606 0.93408 1.21695 1.00809 0.91963 1.06173 1.22127 0.95816 0.98172 0.97426 1.22667 0.91287 0.96463 1.00196 1.67658 1.39836 0.97385 1.07892 1.20969 0.88638 0.93206 1.05313 1.17458 0.82643 0.86860 0.77924 1.90802 1.71750 1.27353 1.49934 1.45658 1.04828 1.10420 1.72322 1.21802 0.89718 0.86349 1.00953 0.90692 1.21679 0.96142 0.99806 0.97938 1.22076 0.98948 0.98060 0.98003 1.20449 0.88511 0.94519 0.90575 0.95848 1.21795 0.98285 0.98613 1.00610 1.44034 1.14874 1.49099 1.22512 1.19119 1.25567 0.96626 0.95956 0.91480 1.25006 1.01905 0.94840 0.97601 1.69988 1.39746 1.04229 1.40482 0.86373 0.80226 0.78923 0.82211 1.20392 1.21840 1.21811 1.21196 0.98714 0.89876 0.86678 0.92507 0.92607 0.91690 0.90518 0.90282 0.92109 0.92200 0.84037 0.84314 0.82064 0.75996 0.93066 0.91187 0.92387 0.92960 0.92873 0.94483 0.92165 0.93861 0.88437 0.95755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.37 6.30 -26.73 -0.17 -1.54 16 3 C 0.05 0.60 4.76 37.15 0.18 0.78 16 4 O -0.27 -4.57 8.20 -40.60 -0.33 -4.90 16 5 C 0.14 2.25 6.71 -38.56 -0.26 1.99 16 6 C -0.18 -2.19 9.13 -39.15 -0.36 -2.54 16 7 C -0.12 -1.22 10.10 -39.36 -0.40 -1.62 16 8 C 0.05 0.67 11.17 -17.55 -0.20 0.48 16 9 N -0.42 -6.86 9.54 -9.71 -0.09 -6.95 16 10 C 0.06 1.09 6.76 -82.88 -0.56 0.53 16 11 C 0.57 12.24 7.77 -12.33 -0.10 12.14 16 12 O -0.52 -12.69 14.80 -16.63 -0.25 -12.93 16 13 N -0.68 -13.81 4.90 -54.64 -0.27 -14.07 16 14 C 0.12 2.41 2.81 -67.81 -0.19 2.22 16 15 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 16 C -0.12 -1.99 5.59 -26.69 -0.15 -2.14 16 17 C -0.13 -2.25 5.20 -26.61 -0.14 -2.39 16 18 C 0.17 3.42 3.50 -67.60 -0.24 3.19 16 19 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.14 -2.57 7.94 37.15 0.30 -2.27 16 21 N -0.58 -14.44 2.91 -164.77 -0.48 -14.92 16 22 C -0.24 -6.67 8.61 -15.06 -0.13 -6.80 16 23 H 0.07 1.82 6.20 -52.49 -0.33 1.49 16 24 C 0.00 0.14 4.96 -17.43 -0.09 0.06 16 25 N -0.90 -27.23 11.14 55.49 0.62 -26.61 16 26 Si 0.89 22.87 29.58 -169.99 -5.03 17.85 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 C 0.16 4.04 4.89 -3.71 -0.02 4.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 36 H 0.06 0.64 7.70 -51.93 -0.40 0.24 16 37 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16 38 H 0.14 1.27 6.46 -52.48 -0.34 0.93 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.40 7.75 6.10 -40.82 -0.25 7.50 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 1.03 7.40 -51.93 -0.38 0.64 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.10 2.87 6.06 -51.93 -0.31 2.55 16 51 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 401.74 15.07 6.05 6.05 Total: -1.00 -34.15 401.74 -10.08 -44.23 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.17 Total: 6.96 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.14 Total: 5.29 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.22 Total: -62.55 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.58 Total: -17.83 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.15 -10.08 -44.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071796236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.457 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds