Wall clock time and date at job start Wed Apr 1 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47304 * 2 1 4 4 O 1.42897 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.35649 * 117.00012 * 179.97438 * 4 3 2 6 6 C 1.39337 * 120.54308 * 0.02562 * 5 4 3 7 7 C 1.38300 * 118.44181 * 179.97438 * 6 5 4 8 8 C 1.38769 * 119.44609 * 0.02562 * 7 6 5 9 9 N 1.31377 * 121.06592 * 359.71325 * 8 7 6 10 10 C 1.32857 * 121.69123 * 0.57888 * 9 8 7 11 11 C 1.47834 * 119.78352 * 179.70286 * 10 9 8 12 12 O 1.21547 * 120.00648 * 179.72431 * 11 10 9 13 13 N 1.34780 * 119.99635 * 359.72801 * 11 10 9 14 14 C 1.46500 * 120.00047 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.49900 * 34.93530 * 14 13 11 16 16 C 1.53041 * 109.49925 * 155.00121 * 14 13 11 17 17 C 1.53039 * 109.53692 * 58.58494 * 16 14 13 18 18 C 1.53194 * 109.31505 * 61.36941 * 17 16 14 19 19 H 1.09001 * 109.58684 * 65.29017 * 18 17 16 20 20 C 1.52993 * 109.58861 * 185.57753 * 18 17 16 21 21 N 1.46930 * 108.77421 * 305.36344 * 18 17 16 22 22 C 1.36936 * 120.63224 * 233.61192 * 21 18 17 23 23 H 1.08001 * 119.99956 * 29.00086 * 22 21 18 24 24 C 1.38809 * 119.99901 * 209.00834 * 22 21 18 25 25 N 1.31617 * 120.00017 * 15.03305 * 24 22 21 26 26 Si 1.86798 * 119.99825 * 195.02477 * 24 22 21 27 27 H 1.48502 * 109.47271 * 0.02562 * 26 24 22 28 28 H 1.48510 * 109.46997 * 120.00317 * 26 24 22 29 29 H 1.48497 * 109.47574 * 240.00138 * 26 24 22 30 30 C 1.46930 * 118.73677 * 53.60178 * 21 18 17 31 31 H 1.09006 * 109.46910 * 300.00011 * 1 2 3 32 32 H 1.08996 * 109.46977 * 60.00179 * 1 2 3 33 33 H 1.09002 * 109.47361 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.46613 * 239.99555 * 2 1 3 35 35 H 1.09008 * 109.46840 * 120.00268 * 2 1 3 36 36 H 1.09006 * 109.47147 * 60.00134 * 3 2 1 37 37 H 1.09003 * 109.47026 * 300.00238 * 3 2 1 38 38 H 1.08004 * 120.78144 * 359.95325 * 6 5 4 39 39 H 1.08002 * 120.27581 * 180.02562 * 7 6 5 40 40 H 1.08001 * 119.46673 * 179.97438 * 8 7 6 41 41 H 0.97003 * 120.00281 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.45416 * 298.56589 * 16 14 13 43 43 H 1.08994 * 109.45051 * 178.60358 * 16 14 13 44 44 H 1.09001 * 109.50040 * 301.41260 * 17 16 14 45 45 H 1.09004 * 109.49635 * 181.31866 * 17 16 14 46 46 H 1.08995 * 109.47178 * 59.99604 * 20 18 17 47 47 H 1.09006 * 109.47193 * 299.99548 * 20 18 17 48 48 H 1.09000 * 109.47442 * 179.97438 * 20 18 17 49 49 H 0.96997 * 119.99877 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.58487 * 186.60741 * 30 21 18 51 51 H 1.09000 * 109.58126 * 66.18508 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0849 2.6510 0.0001 6 6 3.3371 3.8267 -0.0003 7 6 4.0098 5.0351 -0.0003 8 6 5.3974 5.0435 -0.0002 9 7 6.0821 3.9222 0.0053 10 6 5.4811 2.7374 -0.0003 11 6 6.2932 1.5021 -0.0003 12 8 5.7475 0.4160 -0.0003 13 7 7.6387 1.5802 -0.0002 14 6 8.4435 0.3561 0.0004 15 1 7.9396 -0.4109 -0.5878 16 6 9.8167 0.6473 -0.6093 17 6 10.5112 1.7479 0.1960 18 6 10.7137 1.2701 1.6374 19 1 11.4066 0.4287 1.6495 20 6 11.2800 2.4132 2.4819 21 7 9.4156 0.8507 2.1833 22 6 8.9538 1.3710 3.3627 23 1 9.2442 2.3666 3.6642 24 6 8.1125 0.6188 4.1709 25 7 7.9920 -0.6764 3.9703 26 14 7.1515 1.4448 5.5434 27 1 7.4603 2.8972 5.5593 28 1 5.6969 1.2509 5.3152 29 1 7.5326 0.8429 6.8463 30 6 8.6225 -0.1375 1.4395 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9562 -0.8900 38 1 2.2575 3.7952 -0.0011 39 1 3.4596 5.9645 -0.0002 40 1 5.9230 5.9869 -0.0006 41 1 8.0742 2.4469 0.0003 42 1 9.6935 0.9752 -1.6415 43 1 10.4236 -0.2578 -0.5858 44 1 9.8930 2.6456 0.1937 45 1 11.4792 1.9712 -0.2526 46 1 10.5835 3.2515 2.4725 47 1 12.2369 2.7313 2.0679 48 1 11.4229 2.0714 3.5070 49 1 7.4038 -1.2020 4.5348 50 1 7.6462 -0.2518 1.9106 51 1 9.1429 -1.0952 1.4353 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071796236.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:37 Heat of formation + Delta-G solvation = -41.958986 kcal Electronic energy + Delta-G solvation = -32372.116930 eV Core-core repulsion = 28271.450672 eV Total energy + Delta-G solvation = -4100.666258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.94605 -40.58434 -39.37985 -38.91614 -35.75030 -34.94840 -34.49463 -33.51744 -32.10705 -31.74718 -31.27069 -27.92010 -27.63768 -26.85876 -25.62929 -24.04433 -23.85827 -22.75891 -22.17320 -21.75805 -20.31919 -19.47993 -18.81048 -18.24003 -17.86725 -17.43094 -17.15550 -16.49489 -16.25936 -16.04631 -15.71986 -15.53805 -15.38097 -15.17044 -14.99159 -14.76571 -14.53065 -14.46425 -14.07901 -14.01039 -13.61016 -13.59929 -13.06953 -13.01258 -12.98630 -12.88237 -12.63845 -12.55754 -12.53609 -12.41396 -12.11453 -12.06513 -11.98024 -11.67884 -11.57046 -11.23332 -11.17313 -11.02903 -10.81581 -10.58419 -10.49702 -9.91966 -9.45994 -8.56728 -7.81791 -5.26333 -0.31717 0.24176 1.34644 1.37665 1.46099 1.87618 2.05585 2.31957 2.48342 2.89571 3.30137 3.33818 3.59676 3.64379 3.70366 3.85870 3.92816 4.01598 4.05343 4.11182 4.17129 4.20199 4.20566 4.47015 4.48531 4.50058 4.51260 4.65831 4.72575 4.74726 4.83434 4.90584 4.97092 4.99451 5.05406 5.08064 5.10652 5.11495 5.11803 5.27198 5.27552 5.33755 5.47288 5.57303 5.63467 5.70892 5.75116 5.78448 6.25678 6.44628 6.62029 6.91501 7.18707 7.41351 7.93668 8.44154 9.23404 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.004091 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.306394 B = 6843.272001 C = 7505.145942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.044 3.956 4 O -0.308 6.308 5 C 0.118 3.882 6 C -0.174 4.174 7 C -0.088 4.088 8 C 0.051 3.949 9 N -0.439 5.439 10 C 0.007 3.993 11 C 0.556 3.444 12 O -0.569 6.569 13 N -0.676 5.676 14 C 0.125 3.875 15 H 0.063 0.937 16 C -0.109 4.109 17 C -0.119 4.119 18 C 0.154 3.846 19 H 0.018 0.982 20 C -0.127 4.127 21 N -0.594 5.594 22 C -0.231 4.231 23 H 0.074 0.926 24 C -0.057 4.057 25 N -0.937 5.937 26 Si 0.946 3.054 27 H -0.260 1.260 28 H -0.307 1.307 29 H -0.289 1.289 30 C 0.174 3.826 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.178 0.822 39 H 0.193 0.807 40 H 0.200 0.800 41 H 0.409 0.591 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.092 0.908 46 H 0.048 0.952 47 H 0.077 0.923 48 H 0.036 0.964 49 H 0.241 0.759 50 H 0.046 0.954 51 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.034 13.850 -13.240 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.163 4.163 3 C -0.031 4.031 4 O -0.219 6.219 5 C 0.067 3.933 6 C -0.200 4.200 7 C -0.107 4.107 8 C -0.111 4.111 9 N -0.150 5.150 10 C -0.130 4.130 11 C 0.342 3.658 12 O -0.448 6.448 13 N -0.327 5.327 14 C 0.019 3.981 15 H 0.081 0.919 16 C -0.147 4.147 17 C -0.158 4.158 18 C 0.049 3.951 19 H 0.035 0.965 20 C -0.185 4.185 21 N -0.318 5.318 22 C -0.361 4.361 23 H 0.092 0.908 24 C -0.251 4.251 25 N -0.584 5.584 26 Si 0.776 3.224 27 H -0.184 1.184 28 H -0.235 1.235 29 H -0.216 1.216 30 C 0.046 3.954 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.195 0.805 39 H 0.210 0.790 40 H 0.216 0.784 41 H 0.247 0.753 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -9.459 12.727 -13.133 20.590 hybrid contribution -1.414 -0.201 1.324 1.947 sum -10.873 12.526 -11.810 20.361 Atomic orbital electron populations 1.21648 0.91507 1.03271 1.03160 1.21498 0.97937 0.94379 1.02524 1.23301 0.76894 0.99968 1.02901 1.86406 1.23053 1.25971 1.86512 1.20306 0.92173 0.86878 0.93938 1.22152 1.02421 0.90784 1.04638 1.22738 0.95242 0.99513 0.93247 1.23469 0.92763 0.96371 0.98491 1.67556 1.40972 0.97670 1.08851 1.20531 0.89419 0.92748 1.10261 1.18153 0.83072 0.87855 0.76688 1.90751 1.72576 1.29478 1.51988 1.45588 1.04715 1.10269 1.72112 1.21550 0.92182 0.86615 0.97754 0.91905 1.21656 0.93381 1.00432 0.99225 1.21959 1.01019 0.97564 0.95278 1.20776 0.86186 0.95009 0.93138 0.96479 1.21714 1.00108 0.97452 0.99180 1.44241 1.16797 1.48709 1.22033 1.19432 1.24125 0.96534 0.96035 0.90812 1.25702 1.03782 0.95326 1.00288 1.70165 1.40922 1.05617 1.41740 0.85490 0.77920 0.79037 0.79936 1.18432 1.23547 1.21626 1.20833 0.95780 0.89506 0.89234 0.91612 0.90730 0.91294 0.91797 0.93169 0.90689 0.89270 0.80506 0.78985 0.78361 0.75290 0.89934 0.90491 0.92366 0.88910 0.93320 0.90393 0.94519 0.94960 0.93596 0.98336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.91 71.98 0.71 -1.36 16 2 C -0.13 -2.93 6.30 30.59 0.19 -2.74 16 3 C 0.04 1.02 4.76 71.98 0.34 1.36 16 4 O -0.31 -11.07 8.20 -68.65 -0.56 -11.63 16 5 C 0.12 3.90 6.71 22.93 0.15 4.06 16 6 C -0.17 -3.66 9.13 22.55 0.21 -3.45 16 7 C -0.09 -1.42 10.10 22.41 0.23 -1.19 16 8 C 0.05 1.09 11.17 84.89 0.95 2.04 16 9 N -0.44 -14.01 9.54 -184.62 -1.76 -15.77 16 10 C 0.01 0.26 6.76 41.93 0.28 0.54 16 11 C 0.56 25.56 7.77 86.78 0.67 26.23 16 12 O -0.57 -30.20 14.80 17.12 0.25 -29.95 16 13 N -0.68 -28.44 4.90 -445.06 -2.18 -30.63 16 14 C 0.13 5.35 2.81 45.07 0.13 5.48 16 15 H 0.06 2.81 7.58 -2.39 -0.02 2.79 16 16 C -0.11 -3.55 5.59 30.62 0.17 -3.38 16 17 C -0.12 -3.76 5.20 30.67 0.16 -3.60 16 18 C 0.15 6.21 3.50 44.97 0.16 6.37 16 19 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 20 C -0.13 -4.57 7.94 71.98 0.57 -4.00 16 21 N -0.59 -30.35 2.91 -675.22 -1.96 -32.31 16 22 C -0.23 -12.99 8.61 84.03 0.72 -12.27 16 23 H 0.07 4.01 6.20 -2.91 -0.02 3.99 16 24 C -0.06 -3.39 4.96 84.86 0.42 -2.97 16 25 N -0.94 -60.45 11.14 21.65 0.24 -60.21 16 26 Si 0.95 48.76 29.58 68.60 2.03 50.79 16 27 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.31 -16.48 7.11 99.48 0.71 -15.77 16 29 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 30 C 0.17 9.24 4.89 86.36 0.42 9.66 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.07 1.49 7.70 -2.38 -0.02 1.47 16 37 H 0.09 1.51 7.70 -2.39 -0.02 1.49 16 38 H 0.18 2.35 6.46 -2.91 -0.02 2.33 16 39 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.41 15.85 6.10 -92.71 -0.57 15.28 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 1.87 6.40 -2.39 -0.02 1.85 16 45 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.05 1.78 7.40 -2.39 -0.02 1.76 16 47 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.04 1.46 7.66 -2.39 -0.02 1.45 16 49 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 50 H 0.05 2.93 6.06 -2.39 -0.01 2.91 16 51 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -84.52 401.74 2.91 -81.60 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.37 Total: 27.33 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 6.49 Total: 20.78 kcal Atomic # 7 Polarization: -133.25 SS G_CDS: -5.67 Total: -138.91 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -0.31 Total: -41.58 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.03 Total: 50.79 kcal Total: -84.52 2.91 -81.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071796236.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.644 kcal (2) G-P(sol) polarization free energy of solvation -84.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds