Wall clock time and date at job start Wed Apr 1 2020 05:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47336 * 2 1 4 4 C 1.50702 * 109.47001 * 120.00081 * 2 1 3 5 5 C 1.38359 * 119.40477 * 274.99677 * 4 2 1 6 6 C 1.38334 * 119.45597 * 179.97438 * 5 4 2 7 7 C 1.39990 * 118.35289 * 0.02562 * 6 5 4 8 8 C 1.47523 * 120.59841 * 180.02562 * 7 6 5 9 9 O 1.21586 * 120.00016 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00011 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99981 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.52297 * 34.91926 * 11 10 8 13 13 C 1.53036 * 109.49558 * 154.99646 * 11 10 8 14 14 C 1.53041 * 109.53810 * 181.31971 * 13 11 10 15 15 C 1.53191 * 109.31030 * 298.63571 * 14 13 11 16 16 H 1.08999 * 109.58837 * 294.84566 * 15 14 13 17 17 C 1.53001 * 109.58742 * 174.56473 * 15 14 13 18 18 N 1.46929 * 108.89396 * 54.70942 * 15 14 13 19 19 C 1.36935 * 120.63641 * 126.32653 * 18 15 14 20 20 H 1.08002 * 119.99660 * 330.33687 * 19 18 15 21 21 C 1.38810 * 120.00726 * 150.33393 * 19 18 15 22 22 N 1.31624 * 119.99291 * 344.65073 * 21 19 18 23 23 Si 1.86796 * 120.00435 * 164.64705 * 21 19 18 24 24 H 1.48503 * 109.46912 * 90.00333 * 23 21 19 25 25 H 1.48493 * 109.47167 * 209.99924 * 23 21 19 26 26 H 1.48504 * 109.47069 * 330.00392 * 23 21 19 27 27 C 1.47210 * 118.55262 * 306.45626 * 18 15 14 28 28 C 1.40285 * 118.80239 * 0.26636 * 7 6 5 29 29 O 1.35429 * 119.79536 * 179.70209 * 28 7 6 30 30 N 1.31878 * 119.40776 * 95.02075 * 4 2 1 31 31 H 1.09001 * 109.47454 * 300.00009 * 1 2 3 32 32 H 1.09007 * 109.47226 * 60.00450 * 1 2 3 33 33 H 1.09000 * 109.47451 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47015 * 239.99730 * 2 1 3 35 35 H 1.09000 * 109.47037 * 179.97438 * 3 2 1 36 36 H 1.09006 * 109.47102 * 299.99799 * 3 2 1 37 37 H 1.09004 * 109.47289 * 59.99898 * 3 2 1 38 38 H 1.07999 * 120.26936 * 359.97438 * 5 4 2 39 39 H 1.08006 * 120.82164 * 180.02562 * 6 5 4 40 40 H 0.96994 * 119.99783 * 359.97438 * 10 8 7 41 41 H 1.08998 * 109.46275 * 61.30202 * 13 11 10 42 42 H 1.09000 * 109.46667 * 301.33878 * 13 11 10 43 43 H 1.09002 * 109.50206 * 178.68848 * 14 13 11 44 44 H 1.09000 * 109.49817 * 58.58725 * 14 13 11 45 45 H 1.09000 * 109.47403 * 60.28374 * 17 15 14 46 46 H 1.09007 * 109.47512 * 180.28589 * 17 15 14 47 47 H 1.09007 * 109.47284 * 300.28326 * 17 15 14 48 48 H 0.97004 * 119.99680 * 180.02562 * 22 21 19 49 49 H 1.09000 * 109.56266 * 293.70507 * 27 18 15 50 50 H 1.08999 * 109.64991 * 173.39780 * 27 18 15 51 51 H 0.96701 * 113.99243 * 90.00766 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1597 -0.0083 2.4158 6 6 2.6202 -0.6595 3.5461 7 6 2.9433 -2.0179 3.4455 8 6 3.4382 -2.7610 4.6198 9 8 3.7151 -3.9407 4.5203 10 7 3.5824 -2.1325 5.8034 11 6 4.0734 -2.8706 6.9697 12 1 4.8069 -3.6108 6.6500 13 6 4.7260 -1.8963 7.9530 14 6 5.2684 -2.6705 9.1566 15 6 4.1099 -3.3743 9.8702 16 1 3.4331 -2.6300 10.2899 17 6 4.6594 -4.2581 10.9918 18 7 3.3867 -4.2053 8.8980 19 6 3.1722 -5.5358 9.1402 20 1 3.8769 -6.0966 9.7362 21 6 2.0491 -6.1640 8.6197 22 7 1.0470 -5.4451 8.1597 23 14 1.9598 -8.0292 8.5721 24 1 1.3494 -8.5278 9.8308 25 1 1.1301 -8.4557 7.4169 26 1 3.3289 -8.5868 8.4311 27 6 2.9013 -3.5767 7.6585 28 6 2.7928 -2.6585 2.2065 29 8 3.1052 -3.9706 2.0850 30 7 2.3429 -1.9901 1.1579 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.9018 1.0396 2.4583 39 1 2.7277 -0.1329 4.4830 40 1 3.3611 -1.1915 5.8828 41 1 3.9857 -1.1714 8.2914 42 1 5.5450 -1.3746 7.4579 43 1 5.7537 -1.9790 9.8454 44 1 5.9907 -3.4126 8.8163 45 1 5.1998 -3.6406 11.7093 46 1 3.8340 -4.7618 11.4950 47 1 5.3359 -5.0016 10.5702 48 1 0.2619 -5.8840 7.7964 49 1 2.1259 -2.8489 7.8977 50 1 2.4939 -4.3400 6.9956 51 1 2.3664 -4.5688 2.2627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071879866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:05 Heat of formation + Delta-G solvation = -53.910153 kcal Electronic energy + Delta-G solvation = -31358.490347 eV Core-core repulsion = 27257.305847 eV Total energy + Delta-G solvation = -4101.184500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.03876 -40.58710 -39.19503 -38.46722 -36.18194 -35.88879 -34.66954 -33.83456 -32.13346 -31.71978 -30.61643 -28.00438 -27.78971 -26.89319 -25.68840 -24.35543 -24.01205 -22.64693 -21.96197 -21.34929 -20.97321 -19.50392 -18.74219 -18.37999 -18.09980 -17.18881 -16.98827 -16.58316 -16.15892 -15.84736 -15.78715 -15.41861 -15.25277 -15.22444 -14.97806 -14.73163 -14.46550 -14.20765 -14.09434 -13.91735 -13.52187 -13.44784 -13.07583 -12.85454 -12.83020 -12.77724 -12.70328 -12.55037 -12.38455 -12.28993 -12.14282 -12.05326 -11.99364 -11.81916 -11.65754 -11.42158 -11.16891 -11.06959 -11.02438 -10.54180 -10.44951 -10.15122 -9.86067 -8.61165 -7.86126 -5.31440 -0.51223 0.04254 1.39371 1.43893 1.51132 1.79655 2.04735 2.42244 2.49761 2.70046 3.30086 3.34719 3.58537 3.62483 3.74121 3.90318 3.96694 4.09758 4.10925 4.13840 4.25367 4.26954 4.39473 4.41668 4.58887 4.62857 4.71785 4.77448 4.79513 4.84344 4.88361 4.89795 4.96495 5.01294 5.04849 5.07157 5.18953 5.21763 5.30002 5.32983 5.36785 5.42647 5.45149 5.46603 5.55004 5.61501 5.70566 5.79523 6.40223 6.44163 6.57486 6.78860 7.15275 7.26495 7.89722 8.39527 9.19168 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.002844 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.970859 B = 9844.299732 C =11065.403324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.050 4.050 3 C -0.144 4.144 4 C 0.172 3.828 5 C -0.175 4.175 6 C -0.017 4.017 7 C -0.223 4.223 8 C 0.553 3.447 9 O -0.566 6.566 10 N -0.701 5.701 11 C 0.133 3.867 12 H 0.049 0.951 13 C -0.107 4.107 14 C -0.119 4.119 15 C 0.153 3.847 16 H 0.024 0.976 17 C -0.130 4.130 18 N -0.603 5.603 19 C -0.249 4.249 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.932 5.932 23 Si 0.955 3.045 24 H -0.279 1.279 25 H -0.300 1.300 26 H -0.274 1.274 27 C 0.181 3.819 28 C 0.348 3.652 29 O -0.483 6.483 30 N -0.531 5.531 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.189 0.811 39 H 0.178 0.822 40 H 0.412 0.588 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.244 0.756 49 H 0.001 0.999 50 H 0.039 0.961 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 21.041 -11.298 23.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.069 4.069 3 C -0.201 4.201 4 C 0.034 3.966 5 C -0.194 4.194 6 C -0.043 4.043 7 C -0.229 4.229 8 C 0.340 3.660 9 O -0.446 6.446 10 N -0.353 5.353 11 C 0.027 3.973 12 H 0.067 0.933 13 C -0.145 4.145 14 C -0.158 4.158 15 C 0.048 3.952 16 H 0.042 0.958 17 C -0.187 4.187 18 N -0.328 5.328 19 C -0.380 4.380 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.578 5.578 23 Si 0.784 3.216 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.199 1.199 27 C 0.054 3.946 28 C 0.169 3.831 29 O -0.292 6.292 30 N -0.250 5.250 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.206 0.794 39 H 0.195 0.805 40 H 0.249 0.751 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.116 0.884 44 H 0.068 0.932 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.058 0.942 51 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.850 19.813 -12.266 23.476 hybrid contribution -0.919 -1.471 0.684 1.864 sum 1.930 18.342 -11.582 21.778 Atomic orbital electron populations 1.21808 0.92310 1.01757 1.03827 1.20270 0.97074 0.96646 0.92927 1.21946 1.01245 0.92701 1.04238 1.21908 0.90311 0.87475 0.96919 1.22341 1.01844 1.03706 0.91512 1.22126 0.90520 0.90542 1.01067 1.21084 1.10563 0.97613 0.93683 1.18298 0.77784 0.86475 0.83465 1.90824 1.51201 1.17346 1.85203 1.45723 1.66898 1.14229 1.08448 1.21532 0.96665 0.94293 0.84852 0.93298 1.21657 1.00590 0.96979 0.95294 1.21959 0.97617 0.99166 0.97049 1.20813 0.92200 0.92396 0.89801 0.95805 1.21741 0.99977 0.99504 0.97517 1.44365 1.65511 1.06339 1.16540 1.19430 1.02356 0.86131 1.30036 0.90983 1.25773 0.95114 1.01504 1.02380 1.70155 1.06109 1.34914 1.46641 0.85459 0.77447 0.81862 0.76872 1.20501 1.22634 1.19933 1.20782 0.91807 0.94421 0.87560 1.19376 0.90413 0.86224 0.87065 1.84641 1.39979 1.12580 1.92027 1.67129 1.14619 1.11412 1.31874 0.91221 0.89713 0.94207 0.90081 0.92615 0.90061 0.90136 0.79368 0.80503 0.75068 0.90373 0.89597 0.88443 0.93165 0.90231 0.94351 0.93724 0.94717 0.98097 0.94196 0.72673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.17 71.98 0.66 -0.98 16 2 C -0.05 -0.69 3.23 -11.54 -0.04 -0.72 16 3 C -0.14 -1.09 8.61 71.98 0.62 -0.47 16 4 C 0.17 3.49 5.79 42.58 0.25 3.73 16 5 C -0.17 -2.67 9.15 22.32 0.20 -2.47 16 6 C -0.02 -0.32 9.64 22.72 0.22 -0.10 16 7 C -0.22 -6.66 5.90 -19.91 -0.12 -6.77 16 8 C 0.55 20.72 7.74 86.69 0.67 21.39 16 9 O -0.57 -27.37 14.85 16.83 0.25 -27.12 16 10 N -0.70 -22.39 5.03 -445.35 -2.24 -24.64 16 11 C 0.13 5.12 2.61 45.07 0.12 5.24 16 12 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 13 C -0.11 -3.05 5.35 30.62 0.16 -2.89 16 14 C -0.12 -3.62 5.37 30.67 0.16 -3.45 16 15 C 0.15 6.01 3.49 44.97 0.16 6.16 16 16 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 17 C -0.13 -4.66 7.95 71.98 0.57 -4.09 16 18 N -0.60 -30.47 3.00 -674.51 -2.02 -32.49 16 19 C -0.25 -14.02 8.58 84.03 0.72 -13.30 16 20 H 0.07 3.93 6.23 -2.91 -0.02 3.91 16 21 C -0.05 -3.09 4.95 84.86 0.42 -2.67 16 22 N -0.93 -57.73 11.23 21.65 0.24 -57.49 16 23 Si 0.95 47.94 29.58 68.60 2.03 49.97 16 24 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 25 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 26 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.18 9.00 4.87 86.31 0.42 9.42 16 28 C 0.35 11.38 7.77 85.13 0.66 12.04 16 29 O -0.48 -17.41 11.66 -66.43 -0.77 -18.18 16 30 N -0.53 -15.15 10.28 -296.05 -3.04 -18.20 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.08 0.33 6.47 -2.38 -0.02 0.32 16 38 H 0.19 1.21 6.28 -2.91 -0.02 1.19 16 39 H 0.18 2.00 6.52 -2.91 -0.02 1.98 16 40 H 0.41 9.14 6.70 -92.71 -0.62 8.52 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 45 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.04 1.52 7.65 -2.38 -0.02 1.50 16 47 H 0.04 1.66 7.42 -2.38 -0.02 1.64 16 48 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 49 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.04 2.40 6.16 -2.39 -0.01 2.39 16 51 H 0.41 12.50 9.06 -74.06 -0.67 11.83 16 Total: -1.00 -83.56 401.35 -0.03 -83.59 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -0.33 Total: 24.49 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 5.86 Total: 20.07 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -7.06 Total: -132.81 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.52 Total: -45.30 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -83.56 -0.03 -83.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071879866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.679 kcal (2) G-P(sol) polarization free energy of solvation -83.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds