Wall clock time and date at job start Wed Apr 1 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47415 * 2 1 4 4 O 1.42909 * 109.47128 * 119.99691 * 2 1 3 5 5 C 1.35663 * 116.99789 * 149.99784 * 4 2 1 6 6 C 1.39294 * 119.61264 * 179.72600 * 5 4 2 7 7 C 1.38327 * 119.30325 * 179.79274 * 6 5 4 8 8 C 1.38783 * 118.55960 * 0.47543 * 7 6 5 9 9 C 1.39121 * 119.18671 * 359.74914 * 8 7 6 10 10 C 1.48157 * 119.69174 * 179.97438 * 9 8 7 11 11 O 1.21524 * 119.99334 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00595 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00500 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.49266 * 34.93266 * 13 12 10 15 15 C 1.53039 * 109.49642 * 154.99888 * 13 12 10 16 16 C 1.53039 * 109.53662 * 58.59193 * 15 13 12 17 17 C 1.53186 * 109.31479 * 61.36378 * 16 15 13 18 18 H 1.08995 * 109.58945 * 65.29606 * 17 16 15 19 19 C 1.53006 * 109.58646 * 185.57684 * 17 16 15 20 20 N 1.46928 * 108.77336 * 305.36019 * 17 16 15 21 21 C 1.36941 * 120.63063 * 233.58797 * 20 17 16 22 22 H 1.07994 * 119.99981 * 29.55471 * 21 20 17 23 23 C 1.38818 * 119.99651 * 209.55108 * 21 20 17 24 24 N 1.31618 * 119.99975 * 16.13186 * 23 21 20 25 25 Si 1.86797 * 119.99739 * 196.13285 * 23 21 20 26 26 H 1.48495 * 109.47171 * 92.95641 * 25 23 21 27 27 H 1.48501 * 109.47206 * 212.95879 * 25 23 21 28 28 H 1.48508 * 109.47261 * 332.95891 * 25 23 21 29 29 C 1.46922 * 118.73560 * 53.61379 * 20 17 16 30 30 N 1.31897 * 119.61970 * 0.02562 * 5 4 2 31 31 H 1.09001 * 109.46815 * 60.00199 * 1 2 3 32 32 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46982 * 300.00206 * 1 2 3 34 34 H 1.09000 * 109.47382 * 239.99143 * 2 1 3 35 35 H 1.08996 * 109.47173 * 59.99541 * 3 2 1 36 36 H 1.08998 * 109.47244 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46967 * 299.99708 * 3 2 1 38 38 H 1.07996 * 120.34618 * 0.02562 * 6 5 4 39 39 H 1.07997 * 120.72065 * 180.20366 * 7 6 5 40 40 H 1.08007 * 120.40426 * 179.76756 * 8 7 6 41 41 H 0.97011 * 119.99892 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.45777 * 178.60929 * 15 13 12 43 43 H 1.08992 * 109.46194 * 298.57908 * 15 13 12 44 44 H 1.08998 * 109.49397 * 181.31518 * 16 15 13 45 45 H 1.09006 * 109.49904 * 301.40639 * 16 15 13 46 46 H 1.09004 * 109.47071 * 59.99843 * 19 17 16 47 47 H 1.08995 * 109.47001 * 179.97438 * 19 17 16 48 48 H 1.09003 * 109.47103 * 300.00139 * 19 17 16 49 49 H 0.97001 * 119.99175 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.58382 * 186.59812 * 29 20 17 51 51 H 1.08997 * 109.58931 * 66.17642 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.1986 -1.3129 1.0654 6 6 3.7171 -1.9823 2.1714 7 6 4.9312 -2.6357 2.0595 8 6 5.5985 -2.5920 0.8435 9 6 5.0264 -1.9012 -0.2200 10 6 5.7294 -1.8469 -1.5230 11 8 6.8005 -2.4047 -1.6591 12 7 5.1812 -1.1790 -2.5572 13 6 5.8767 -1.1249 -3.8455 14 1 6.3991 -2.0661 -4.0167 15 6 4.8597 -0.8940 -4.9656 16 6 4.1022 0.4106 -4.7082 17 6 5.0925 1.5794 -4.7057 18 1 5.5255 1.6936 -5.6994 19 6 4.3654 2.8669 -4.3122 20 7 6.1554 1.2966 -3.7316 21 6 6.4587 2.1998 -2.7479 22 1 5.6924 2.8558 -2.3623 23 6 7.7511 2.2720 -2.2465 24 7 8.7457 1.7205 -2.9090 25 14 8.0785 3.1518 -0.6316 26 1 8.0336 2.1724 0.4837 27 1 9.4194 3.7884 -0.6777 28 1 7.0428 4.1943 -0.4169 29 6 6.8870 0.0265 -3.8332 30 7 3.8562 -1.2884 -0.0777 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9562 -0.8900 38 1 3.1750 -1.9943 3.1054 39 1 5.3528 -3.1646 2.9015 40 1 6.5502 -3.0886 0.7241 41 1 4.3264 -0.7334 -2.4484 42 1 5.3804 -0.8292 -5.9211 43 1 4.1541 -1.7242 -4.9923 44 1 3.3621 0.5626 -5.4938 45 1 3.6014 0.3560 -3.7416 46 1 3.9374 2.7525 -3.3162 47 1 5.0716 3.6970 -4.3106 48 1 3.5691 3.0681 -5.0289 49 1 9.6489 1.7713 -2.5587 50 1 7.5531 -0.0809 -2.9771 51 1 7.4683 0.0124 -4.7551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071942276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:54 Heat of formation + Delta-G solvation = -19.726362 kcal Electronic energy + Delta-G solvation = -33004.765101 eV Core-core repulsion = 28905.062922 eV Total energy + Delta-G solvation = -4099.702179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.80544 -39.38790 -38.20973 -37.26458 -34.14677 -33.31892 -32.83955 -32.51612 -30.69236 -30.05951 -29.78975 -27.29400 -26.30345 -25.12111 -24.53655 -23.46028 -22.15692 -21.23587 -21.04123 -20.32134 -18.70500 -18.54545 -17.49111 -16.26591 -16.01140 -15.92236 -15.71921 -15.26317 -15.00783 -14.54141 -14.26716 -14.19925 -13.99709 -13.78407 -13.52703 -13.33432 -13.19802 -12.97663 -12.75146 -12.47749 -12.39016 -12.34359 -12.10338 -11.91029 -11.82472 -11.21967 -11.14856 -10.96867 -10.94191 -10.85473 -10.79860 -10.70795 -10.35732 -10.29919 -10.07917 -9.95461 -9.93585 -9.53216 -9.43082 -9.27554 -8.54672 -8.41746 -8.29864 -6.56680 -5.72163 -3.15425 0.77265 1.28201 2.95326 3.11071 3.39863 3.46404 3.47986 3.57544 4.07275 4.19548 4.52863 4.79269 4.87225 4.93169 5.00499 5.04528 5.19206 5.24536 5.33257 5.38300 5.44341 5.50213 5.53301 5.53636 5.62707 5.64669 5.76615 5.82167 5.92182 6.02592 6.04159 6.11650 6.14003 6.18053 6.28158 6.34763 6.36851 6.38278 6.46002 6.53845 6.63165 6.70732 6.91959 7.06883 7.14679 7.22619 7.39597 7.66110 7.73242 7.87414 8.16425 8.52157 8.74908 9.26682 9.91260 10.47534 11.35960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008536 B = 0.004841 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.584547 B = 5782.999538 C = 6196.796115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.082 3.918 3 C -0.170 4.170 4 O -0.303 6.303 5 C 0.323 3.677 6 C -0.177 4.177 7 C -0.048 4.048 8 C -0.154 4.154 9 C 0.135 3.865 10 C 0.566 3.434 11 O -0.537 6.537 12 N -0.676 5.676 13 C 0.115 3.885 14 H 0.077 0.923 15 C -0.118 4.118 16 C -0.131 4.131 17 C 0.166 3.834 18 H 0.025 0.975 19 C -0.135 4.135 20 N -0.581 5.581 21 C -0.246 4.246 22 H 0.067 0.933 23 C 0.007 3.993 24 N -0.898 5.898 25 Si 0.892 3.108 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.163 3.837 30 N -0.513 5.513 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.404 0.596 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.036 0.964 49 H 0.253 0.747 50 H 0.095 0.905 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.022 -7.139 4.969 17.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.026 3.974 3 C -0.228 4.228 4 O -0.211 6.211 5 C 0.141 3.859 6 C -0.198 4.198 7 C -0.074 4.074 8 C -0.175 4.175 9 C -0.002 4.002 10 C 0.349 3.651 11 O -0.415 6.415 12 N -0.325 5.325 13 C 0.009 3.991 14 H 0.095 0.905 15 C -0.156 4.156 16 C -0.170 4.170 17 C 0.059 3.941 18 H 0.042 0.958 19 C -0.192 4.192 20 N -0.304 5.304 21 C -0.376 4.376 22 H 0.084 0.916 23 C -0.192 4.192 24 N -0.542 5.542 25 Si 0.723 3.277 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.205 1.205 29 C 0.036 3.964 30 N -0.240 5.240 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.241 0.759 42 H 0.090 0.910 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.113 0.887 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -14.611 -7.006 4.347 16.777 hybrid contribution 0.290 0.415 1.506 1.589 sum -14.320 -6.591 5.853 16.816 Atomic orbital electron populations 1.21901 0.93032 1.02703 1.02961 1.22359 0.94177 0.93073 0.87805 1.22223 1.02969 0.95127 1.02453 1.86275 1.31489 1.64444 1.38874 1.19709 0.86196 0.90413 0.89545 1.21213 0.97974 1.01903 0.98743 1.21398 0.92888 0.95660 0.97444 1.21991 1.02119 1.00853 0.92577 1.21015 0.90015 0.93857 0.95361 1.17723 0.84674 0.79755 0.82929 1.90768 1.20844 1.47160 1.82682 1.45710 1.24293 1.51516 1.11012 1.21876 0.94729 1.01304 0.81190 0.90489 1.21682 0.97983 0.97492 0.98444 1.22071 0.98316 0.96296 1.00344 1.20451 0.89094 0.91714 0.92810 0.95780 1.21789 0.98937 0.98510 1.00002 1.44014 1.38943 1.16058 1.31378 1.19055 0.92445 1.14809 1.11289 0.91551 1.25025 0.95627 0.99639 0.98921 1.69993 0.98894 1.48231 1.37109 0.86434 0.77316 0.79279 0.84692 1.21681 1.21783 1.20516 1.21163 0.91337 0.82092 1.01781 1.67131 1.09636 1.21896 1.25296 0.90428 0.92045 0.91781 0.89303 0.92273 0.91313 0.90902 0.83992 0.83619 0.83255 0.75907 0.91012 0.93034 0.92886 0.92604 0.92963 0.92107 0.94491 0.93728 0.88714 0.95527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.56 37.16 0.36 -0.98 16 2 C 0.08 0.98 3.11 -26.73 -0.08 0.90 16 3 C -0.17 -2.13 9.53 37.16 0.35 -1.77 16 4 O -0.30 -4.06 9.76 -18.69 -0.18 -4.24 16 5 C 0.32 4.64 7.46 -17.13 -0.13 4.51 16 6 C -0.18 -2.13 10.05 -39.16 -0.39 -2.52 16 7 C -0.05 -0.56 10.16 -39.35 -0.40 -0.96 16 8 C -0.15 -2.28 9.63 -39.05 -0.38 -2.65 16 9 C 0.13 2.33 6.75 -83.02 -0.56 1.77 16 10 C 0.57 11.29 7.78 -12.19 -0.09 11.19 16 11 O -0.54 -12.12 15.98 5.34 0.09 -12.03 16 12 N -0.68 -12.76 4.90 -54.54 -0.27 -13.03 16 13 C 0.11 2.21 2.81 -67.81 -0.19 2.02 16 14 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 15 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 16 C -0.13 -2.10 5.20 -26.61 -0.14 -2.24 16 17 C 0.17 3.26 3.50 -67.60 -0.24 3.02 16 18 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 19 C -0.13 -2.44 7.95 37.16 0.30 -2.14 16 20 N -0.58 -13.76 2.90 -164.78 -0.48 -14.24 16 21 C -0.25 -6.51 8.58 -15.06 -0.13 -6.64 16 22 H 0.07 1.73 6.22 -52.49 -0.33 1.41 16 23 C 0.01 0.19 4.92 -17.43 -0.09 0.11 16 24 N -0.90 -26.45 11.25 55.49 0.62 -25.83 16 25 Si 0.89 22.38 29.58 -169.99 -5.03 17.35 16 26 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.16 3.88 4.89 -3.72 -0.02 3.86 16 30 N -0.51 -8.26 7.82 -9.87 -0.08 -8.34 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.14 6.98 -51.93 -0.36 0.78 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.15 2.15 7.63 -52.48 -0.40 1.75 16 41 H 0.40 7.22 6.10 -40.82 -0.25 6.97 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.90 6.40 -51.93 -0.33 0.57 16 46 H 0.05 0.95 7.40 -51.93 -0.38 0.57 16 47 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 48 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.09 2.67 6.14 -51.93 -0.32 2.35 16 51 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -31.44 405.23 -9.42 -40.85 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -8.22 Total: 7.94 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.98 Total: 5.46 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.20 Total: -61.43 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.10 Total: -16.27 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.44 -9.42 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071942276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.126 kcal (2) G-P(sol) polarization free energy of solvation -31.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds