Wall clock time and date at job start Wed Apr 1 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47415 * 2 1 4 4 O 1.42909 * 109.47128 * 119.99691 * 2 1 3 5 5 C 1.35663 * 116.99789 * 149.99784 * 4 2 1 6 6 C 1.39294 * 119.61264 * 179.72600 * 5 4 2 7 7 C 1.38327 * 119.30325 * 179.79274 * 6 5 4 8 8 C 1.38783 * 118.55960 * 0.47543 * 7 6 5 9 9 C 1.39121 * 119.18671 * 359.74914 * 8 7 6 10 10 C 1.48157 * 119.69174 * 179.97438 * 9 8 7 11 11 O 1.21524 * 119.99334 * 0.02562 * 10 9 8 12 12 N 1.34769 * 120.00595 * 180.02562 * 10 9 8 13 13 C 1.46503 * 120.00500 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.49266 * 34.93266 * 13 12 10 15 15 C 1.53039 * 109.49642 * 154.99888 * 13 12 10 16 16 C 1.53039 * 109.53662 * 58.59193 * 15 13 12 17 17 C 1.53186 * 109.31479 * 61.36378 * 16 15 13 18 18 H 1.08995 * 109.58945 * 65.29606 * 17 16 15 19 19 C 1.53006 * 109.58646 * 185.57684 * 17 16 15 20 20 N 1.46928 * 108.77336 * 305.36019 * 17 16 15 21 21 C 1.36941 * 120.63063 * 233.58797 * 20 17 16 22 22 H 1.07994 * 119.99981 * 29.55471 * 21 20 17 23 23 C 1.38818 * 119.99651 * 209.55108 * 21 20 17 24 24 N 1.31618 * 119.99975 * 16.13186 * 23 21 20 25 25 Si 1.86797 * 119.99739 * 196.13285 * 23 21 20 26 26 H 1.48495 * 109.47171 * 92.95641 * 25 23 21 27 27 H 1.48501 * 109.47206 * 212.95879 * 25 23 21 28 28 H 1.48508 * 109.47261 * 332.95891 * 25 23 21 29 29 C 1.46922 * 118.73560 * 53.61379 * 20 17 16 30 30 N 1.31897 * 119.61970 * 0.02562 * 5 4 2 31 31 H 1.09001 * 109.46815 * 60.00199 * 1 2 3 32 32 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46982 * 300.00206 * 1 2 3 34 34 H 1.09000 * 109.47382 * 239.99143 * 2 1 3 35 35 H 1.08996 * 109.47173 * 59.99541 * 3 2 1 36 36 H 1.08998 * 109.47244 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.46967 * 299.99708 * 3 2 1 38 38 H 1.07996 * 120.34618 * 0.02562 * 6 5 4 39 39 H 1.07997 * 120.72065 * 180.20366 * 7 6 5 40 40 H 1.08007 * 120.40426 * 179.76756 * 8 7 6 41 41 H 0.97011 * 119.99892 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.45777 * 178.60929 * 15 13 12 43 43 H 1.08992 * 109.46194 * 298.57908 * 15 13 12 44 44 H 1.08998 * 109.49397 * 181.31518 * 16 15 13 45 45 H 1.09006 * 109.49904 * 301.40639 * 16 15 13 46 46 H 1.09004 * 109.47071 * 59.99843 * 19 17 16 47 47 H 1.08995 * 109.47001 * 179.97438 * 19 17 16 48 48 H 1.09003 * 109.47103 * 300.00139 * 19 17 16 49 49 H 0.97001 * 119.99175 * 179.97438 * 24 23 21 50 50 H 1.09006 * 109.58382 * 186.59812 * 29 20 17 51 51 H 1.08997 * 109.58931 * 66.17642 * 29 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.1986 -1.3129 1.0654 6 6 3.7171 -1.9823 2.1714 7 6 4.9312 -2.6357 2.0595 8 6 5.5985 -2.5920 0.8435 9 6 5.0264 -1.9012 -0.2200 10 6 5.7294 -1.8469 -1.5230 11 8 6.8005 -2.4047 -1.6591 12 7 5.1812 -1.1790 -2.5572 13 6 5.8767 -1.1249 -3.8455 14 1 6.3991 -2.0661 -4.0167 15 6 4.8597 -0.8940 -4.9656 16 6 4.1022 0.4106 -4.7082 17 6 5.0925 1.5794 -4.7057 18 1 5.5255 1.6936 -5.6994 19 6 4.3654 2.8669 -4.3122 20 7 6.1554 1.2966 -3.7316 21 6 6.4587 2.1998 -2.7479 22 1 5.6924 2.8558 -2.3623 23 6 7.7511 2.2720 -2.2465 24 7 8.7457 1.7205 -2.9090 25 14 8.0785 3.1518 -0.6316 26 1 8.0336 2.1724 0.4837 27 1 9.4194 3.7884 -0.6777 28 1 7.0428 4.1943 -0.4169 29 6 6.8870 0.0265 -3.8332 30 7 3.8562 -1.2884 -0.0777 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 1.6767 1.9563 0.8899 36 1 3.1301 1.4424 -0.0005 37 1 1.6768 1.9562 -0.8900 38 1 3.1750 -1.9943 3.1054 39 1 5.3528 -3.1646 2.9015 40 1 6.5502 -3.0886 0.7241 41 1 4.3264 -0.7334 -2.4484 42 1 5.3804 -0.8292 -5.9211 43 1 4.1541 -1.7242 -4.9923 44 1 3.3621 0.5626 -5.4938 45 1 3.6014 0.3560 -3.7416 46 1 3.9374 2.7525 -3.3162 47 1 5.0716 3.6970 -4.3106 48 1 3.5691 3.0681 -5.0289 49 1 9.6489 1.7713 -2.5587 50 1 7.5531 -0.0809 -2.9771 51 1 7.4683 0.0124 -4.7551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071942276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:53 Heat of formation + Delta-G solvation = -40.404462 kcal Electronic energy + Delta-G solvation = -33005.661771 eV Core-core repulsion = 28905.062922 eV Total energy + Delta-G solvation = -4100.598849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95651 -40.82566 -39.48536 -38.70015 -35.84344 -34.56453 -34.25901 -33.72418 -32.14063 -31.75787 -31.14434 -28.13536 -27.93197 -26.90739 -25.82166 -24.53819 -23.89863 -22.50739 -22.14420 -21.87980 -20.37559 -19.74307 -18.72082 -18.14739 -17.32997 -17.05791 -16.81454 -16.77573 -16.58074 -16.01021 -15.77858 -15.59167 -15.40840 -15.18234 -14.94423 -14.63949 -14.51937 -14.33181 -14.04082 -13.94166 -13.66661 -13.24295 -13.15317 -13.10981 -13.03092 -12.88912 -12.83182 -12.67068 -12.58005 -12.42876 -12.13329 -12.08772 -11.89061 -11.76908 -11.58948 -11.46748 -11.22464 -11.06281 -10.99503 -10.62060 -10.52604 -10.01470 -9.57861 -8.57347 -7.83441 -5.27263 -0.38940 0.23945 1.34931 1.38474 1.44692 1.74253 1.97477 2.19415 2.47346 2.81845 3.00004 3.31964 3.62883 3.82934 3.91010 3.97134 4.01207 4.02136 4.06097 4.08902 4.17372 4.21285 4.30129 4.46844 4.48344 4.63415 4.72029 4.72710 4.80955 4.85264 4.87129 4.90616 4.95310 4.97534 5.02577 5.06258 5.09645 5.11738 5.23714 5.25460 5.30094 5.31363 5.40015 5.55958 5.60365 5.65466 5.72382 5.72926 6.17495 6.43638 6.46518 6.74575 7.18082 7.23662 7.92494 8.43164 9.21837 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008536 B = 0.004841 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3279.584547 B = 5782.999538 C = 6196.796115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.077 3.923 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.306 3.694 6 C -0.162 4.162 7 C -0.035 4.035 8 C -0.161 4.161 9 C 0.100 3.900 10 C 0.557 3.443 11 O -0.576 6.576 12 N -0.670 5.670 13 C 0.122 3.878 14 H 0.070 0.930 15 C -0.110 4.110 16 C -0.119 4.119 17 C 0.155 3.845 18 H 0.018 0.982 19 C -0.127 4.127 20 N -0.592 5.592 21 C -0.230 4.230 22 H 0.072 0.928 23 C -0.052 4.052 24 N -0.934 5.934 25 Si 0.942 3.058 26 H -0.302 1.302 27 H -0.296 1.296 28 H -0.263 1.263 29 C 0.173 3.827 30 N -0.525 5.525 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.031 0.969 37 H 0.086 0.914 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.145 0.855 41 H 0.410 0.590 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.056 0.944 46 H 0.048 0.952 47 H 0.034 0.966 48 H 0.076 0.924 49 H 0.243 0.757 50 H 0.045 0.955 51 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.913 -7.375 6.049 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.022 3.978 3 C -0.223 4.223 4 O -0.212 6.212 5 C 0.124 3.876 6 C -0.183 4.183 7 C -0.059 4.059 8 C -0.183 4.183 9 C -0.035 4.035 10 C 0.343 3.657 11 O -0.457 6.457 12 N -0.319 5.319 13 C 0.016 3.984 14 H 0.088 0.912 15 C -0.148 4.148 16 C -0.158 4.158 17 C 0.049 3.951 18 H 0.035 0.965 19 C -0.184 4.184 20 N -0.316 5.316 21 C -0.361 4.361 22 H 0.089 0.911 23 C -0.247 4.247 24 N -0.581 5.581 25 Si 0.773 3.227 26 H -0.230 1.230 27 H -0.223 1.223 28 H -0.187 1.187 29 C 0.046 3.954 30 N -0.252 5.252 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.104 0.896 38 H 0.195 0.805 39 H 0.208 0.792 40 H 0.163 0.837 41 H 0.248 0.752 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -18.565 -7.220 5.410 20.641 hybrid contribution 1.421 0.496 1.186 1.916 sum -17.145 -6.723 6.596 19.561 Atomic orbital electron populations 1.21885 0.90386 1.03425 1.04130 1.22512 0.96101 0.92210 0.87024 1.22185 1.00488 0.96063 1.03564 1.86288 1.30971 1.64454 1.39460 1.20130 0.86569 0.91063 0.89847 1.21706 0.97732 0.99678 0.99161 1.21862 0.92186 0.94767 0.97130 1.22165 1.02241 1.00423 0.93432 1.20698 0.91307 0.96789 0.94756 1.18287 0.84353 0.78977 0.84106 1.90727 1.22556 1.48798 1.83588 1.45654 1.24224 1.51295 1.10756 1.21645 0.94989 0.98723 0.83029 0.91216 1.21666 0.97512 0.98764 0.96842 1.21951 0.97769 0.94174 1.01884 1.20765 0.88702 0.94395 0.91204 0.96479 1.21710 0.99184 0.96518 1.01007 1.44211 1.39659 1.15633 1.32085 1.19335 0.91991 1.13778 1.10981 0.91080 1.25652 0.95952 1.01491 1.01615 1.70149 0.98710 1.50715 1.38518 0.85607 0.77228 0.78427 0.81468 1.22979 1.22297 1.18728 1.20827 0.91913 0.84319 0.98311 1.66971 1.09357 1.22139 1.26692 0.88729 0.91548 0.91129 0.90503 0.91427 0.94944 0.89563 0.80452 0.79159 0.83712 0.75210 0.90322 0.89852 0.88957 0.92502 0.93313 0.94673 0.90478 0.94818 0.93671 0.97990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.56 71.98 0.69 -1.43 16 2 C 0.08 1.71 3.11 30.59 0.10 1.81 16 3 C -0.17 -3.91 9.53 71.98 0.69 -3.23 16 4 O -0.30 -7.53 9.76 -89.79 -0.88 -8.41 16 5 C 0.31 8.31 7.46 84.94 0.63 8.94 16 6 C -0.16 -3.38 10.05 22.55 0.23 -3.16 16 7 C -0.03 -0.70 10.16 22.42 0.23 -0.47 16 8 C -0.16 -4.71 9.63 22.61 0.22 -4.49 16 9 C 0.10 3.54 6.75 41.84 0.28 3.82 16 10 C 0.56 23.26 7.78 86.88 0.68 23.94 16 11 O -0.58 -27.68 15.98 -3.79 -0.06 -27.74 16 12 N -0.67 -25.88 4.90 -444.75 -2.18 -28.06 16 13 C 0.12 4.82 2.81 45.07 0.13 4.94 16 14 H 0.07 2.84 7.58 -2.39 -0.02 2.82 16 15 C -0.11 -3.28 5.59 30.62 0.17 -3.11 16 16 C -0.12 -3.46 5.20 30.67 0.16 -3.30 16 17 C 0.15 5.89 3.50 44.97 0.16 6.05 16 18 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 19 C -0.13 -4.34 7.95 71.98 0.57 -3.76 16 20 N -0.59 -28.70 2.90 -675.24 -1.96 -30.66 16 21 C -0.23 -12.47 8.58 84.03 0.72 -11.75 16 22 H 0.07 3.74 6.22 -2.91 -0.02 3.72 16 23 C -0.05 -3.03 4.92 84.86 0.42 -2.61 16 24 N -0.93 -58.18 11.25 21.65 0.24 -57.94 16 25 Si 0.94 47.61 29.58 68.60 2.03 49.64 16 26 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 27 H -0.30 -15.05 7.11 99.48 0.71 -14.35 16 28 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 29 C 0.17 8.69 4.89 86.36 0.42 9.12 16 30 N -0.52 -16.78 7.82 -298.20 -2.33 -19.11 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.89 6.98 -2.39 -0.02 1.87 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.15 4.28 7.63 -2.91 -0.02 4.26 16 41 H 0.41 14.65 6.10 -92.70 -0.57 14.09 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.06 1.68 6.40 -2.38 -0.02 1.66 16 46 H 0.05 1.68 7.40 -2.39 -0.02 1.67 16 47 H 0.03 1.36 7.66 -2.39 -0.02 1.34 16 48 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 49 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.04 2.72 6.14 -2.38 -0.01 2.71 16 51 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -74.61 405.23 1.71 -72.90 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.36 Total: 28.06 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 6.48 Total: 21.30 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -6.23 Total: -135.77 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.94 Total: -36.14 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -74.61 1.71 -72.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071942276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.500 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds