Wall clock time and date at job start Wed Apr 1 2020 05:31:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53004 * 109.47478 * 2 1
4 4 O 1.42911 * 109.47372 * 119.99726 * 2 1 3
5 5 C 1.35639 * 117.00285 * 156.85641 * 4 2 1
6 6 C 1.39352 * 120.54155 * 1.55003 * 5 4 2
7 7 C 1.38303 * 118.43806 * 180.28810 * 6 5 4
8 8 C 1.38768 * 119.44425 * 359.73174 * 7 6 5
9 9 N 1.31371 * 121.06822 * 0.02562 * 8 7 6
10 10 C 1.32855 * 121.69958 * 359.97438 * 9 8 7
11 11 C 1.47824 * 119.78711 * 179.97438 * 10 9 8
12 12 O 1.21560 * 120.00434 * 179.97438 * 11 10 9
13 13 N 1.34779 * 119.99988 * 359.97438 * 11 10 9
14 14 C 1.46499 * 120.00202 * 180.02562 * 13 11 10
15 15 H 1.09002 * 109.52222 * 324.91589 * 14 13 11
16 16 C 1.53042 * 109.49958 * 204.83894 * 14 13 11
17 17 C 1.53038 * 109.54016 * 178.68309 * 16 14 13
18 18 C 1.53200 * 109.31426 * 61.36150 * 17 16 14
19 19 H 1.09001 * 109.58238 * 65.14798 * 18 17 16
20 20 C 1.52996 * 109.58807 * 185.57932 * 18 17 16
21 21 N 1.46923 * 108.77617 * 305.37039 * 18 17 16
22 22 C 1.36936 * 120.62966 * 233.63367 * 21 18 17
23 23 H 1.08002 * 120.00524 * 40.48993 * 22 21 18
24 24 C 1.38818 * 119.99956 * 220.49924 * 22 21 18
25 25 N 1.31615 * 120.00067 * 215.30178 * 24 22 21
26 26 Si 1.86798 * 119.99850 * 35.29579 * 24 22 21
27 27 H 1.48502 * 109.46940 * 84.85893 * 26 24 22
28 28 H 1.48498 * 109.47245 * 204.85622 * 26 24 22
29 29 H 1.48497 * 109.47350 * 324.85841 * 26 24 22
30 30 C 1.46930 * 118.74107 * 53.60275 * 21 18 17
31 31 H 1.09000 * 109.46687 * 300.00193 * 1 2 3
32 32 H 1.08997 * 109.46789 * 60.00190 * 1 2 3
33 33 H 1.08998 * 109.47389 * 180.02562 * 1 2 3
34 34 H 1.09000 * 109.47487 * 239.99345 * 2 1 3
35 35 H 1.08998 * 109.46479 * 299.99936 * 3 2 1
36 36 H 1.08993 * 109.47154 * 59.99550 * 3 2 1
37 37 H 1.08998 * 109.47381 * 180.02562 * 3 2 1
38 38 H 1.08001 * 120.77853 * 0.02743 * 6 5 4
39 39 H 1.08003 * 120.27519 * 179.75813 * 7 6 5
40 40 H 1.08000 * 119.46054 * 179.97438 * 8 7 6
41 41 H 0.97002 * 119.99686 * 359.97438 * 13 11 10
42 42 H 1.09007 * 109.45606 * 298.70503 * 16 14 13
43 43 H 1.08998 * 109.46118 * 58.65893 * 16 14 13
44 44 H 1.08995 * 109.49428 * 301.41390 * 17 16 14
45 45 H 1.08995 * 109.52407 * 181.33274 * 17 16 14
46 46 H 1.09000 * 109.47115 * 179.28997 * 20 18 17
47 47 H 1.08999 * 109.46712 * 299.28876 * 20 18 17
48 48 H 1.08996 * 109.47053 * 59.28973 * 20 18 17
49 49 H 0.96999 * 120.00176 * 179.97438 * 25 24 22
50 50 H 1.09001 * 109.58514 * 186.61171 * 30 21 18
51 51 H 1.08991 * 109.70442 * 66.25293 * 30 21 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 8 2.0064 -0.6736 1.1669
5 6 3.2594 -1.1901 1.1114
6 6 4.0415 -1.0298 -0.0308
7 6 5.3105 -1.5794 -0.0425
8 6 5.7678 -2.2638 1.0747
9 7 5.0147 -2.3984 2.1426
10 6 3.7894 -1.8884 2.2015
11 6 2.9782 -2.0656 3.4245
12 8 1.8567 -1.6002 3.4829
13 7 3.4820 -2.7432 4.4750
14 6 2.6779 -2.9194 5.6869
15 1 2.0683 -2.0309 5.8519
16 6 3.6029 -3.1342 6.8870
17 6 2.7649 -3.2856 8.1586
18 6 1.8557 -4.5112 8.0233
19 1 2.4646 -5.4139 7.9723
20 6 0.9173 -4.5893 9.2292
21 7 1.0654 -4.3801 6.7917
22 6 -0.3000 -4.4785 6.8252
23 1 -0.8548 -4.0221 7.6317
24 6 -0.9712 -5.1650 5.8226
25 7 -2.1494 -4.7453 5.4128
26 14 -0.2021 -6.6844 5.0550
27 1 -0.5172 -7.8730 5.8876
28 1 -0.7484 -6.8788 3.6879
29 1 1.2705 -6.5093 4.9793
30 6 1.7678 -4.1408 5.5236
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 -1.0276 0.0005
34 1 1.8934 -0.5139 -0.8899
35 1 1.6767 1.9562 -0.8900
36 1 1.6767 1.9564 0.8899
37 1 3.1300 1.4425 -0.0005
38 1 3.6638 -0.4926 -0.8883
39 1 5.9405 -1.4764 -0.9137
40 1 6.7587 -2.6934 1.0657
41 1 4.3767 -3.1149 4.4283
42 1 4.1946 -4.0366 6.7324
43 1 4.2684 -2.2772 6.9905
44 1 2.1546 -2.3938 8.3002
45 1 3.4247 -3.4149 9.0164
46 1 0.2629 -5.4547 9.1248
47 1 1.5056 -4.6865 10.1416
48 1 0.3150 -3.6823 9.2801
49 1 -2.6183 -5.2247 4.7120
50 1 1.0411 -3.9520 4.7334
51 1 2.3691 -5.0127 5.2663
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001072037114.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:14
Heat of formation + Delta-G solvation = -14.683694 kcal
Electronic energy + Delta-G solvation = -31870.227906 eV
Core-core repulsion = 27770.744393 eV
Total energy + Delta-G solvation = -4099.483513 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-41.07157 -39.21282 -38.56415 -37.52434 -34.39602 -33.44554 -32.78658 -32.52260
-30.81341 -30.58695 -30.03310 -27.50326 -26.24227 -25.04840 -24.48633 -23.70594
-22.39727 -21.43606 -20.88683 -20.10507 -19.34774 -18.52607 -17.63282 -17.03427
-16.39538 -15.83933 -15.63852 -15.28130 -14.97716 -14.66145 -14.61436 -14.33372
-14.20754 -13.76806 -13.52435 -13.42043 -13.32268 -13.13771 -12.77928 -12.67511
-12.47547 -12.40268 -12.32165 -12.12764 -11.92749 -11.68258 -11.34194 -11.21858
-11.09630 -10.97266 -10.66476 -10.53171 -10.38456 -10.17865 -10.09571 -10.01241
-9.90369 -9.64390 -9.46556 -9.32036 -8.64944 -8.47632 -8.18548 -6.60057
-5.97033 -3.25583 0.56625 1.04127 2.91258 2.97186 3.41393 3.49801
3.58683 3.64189 3.89388 4.18013 4.34361 4.46871 4.56199 4.66677
4.69491 4.78738 4.83701 4.92849 5.08237 5.27516 5.30932 5.32673
5.38912 5.43713 5.52350 5.56053 5.63577 5.64835 5.71240 5.74362
5.89848 5.92915 6.07597 6.10539 6.18240 6.21988 6.28514 6.39908
6.43220 6.48793 6.62823 6.70999 6.84158 6.94511 7.10499 7.13569
7.16757 7.25322 7.57924 8.02309 8.14342 8.54059 8.68381 9.11440
9.84329 10.32398 11.18360
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011088 B = 0.003527 C = 0.003121
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2524.647140 B = 7937.808064 C = 8970.311177
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.069 3.931
3 C -0.180 4.180
4 O -0.261 6.261
5 C 0.143 3.857
6 C -0.181 4.181
7 C -0.112 4.112
8 C 0.052 3.948
9 N -0.421 5.421
10 C 0.048 3.952
11 C 0.563 3.437
12 O -0.502 6.502
13 N -0.708 5.708
14 C 0.124 3.876
15 H 0.089 0.911
16 C -0.116 4.116
17 C -0.125 4.125
18 C 0.162 3.838
19 H 0.026 0.974
20 C -0.134 4.134
21 N -0.590 5.590
22 C -0.275 4.275
23 H 0.077 0.923
24 C 0.054 3.946
25 N -0.875 5.875
26 Si 0.839 3.161
27 H -0.289 1.289
28 H -0.298 1.298
29 H -0.261 1.261
30 C 0.141 3.859
31 H 0.073 0.927
32 H 0.075 0.925
33 H 0.069 0.931
34 H 0.071 0.929
35 H 0.073 0.927
36 H 0.072 0.928
37 H 0.059 0.941
38 H 0.146 0.854
39 H 0.140 0.860
40 H 0.163 0.837
41 H 0.401 0.599
42 H 0.059 0.941
43 H 0.055 0.945
44 H 0.064 0.936
45 H 0.057 0.943
46 H 0.062 0.938
47 H 0.037 0.963
48 H 0.056 0.944
49 H 0.262 0.738
50 H 0.071 0.929
51 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.419 9.606 -11.777 22.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C 0.012 3.988
3 C -0.237 4.237
4 O -0.171 6.171
5 C 0.092 3.908
6 C -0.207 4.207
7 C -0.132 4.132
8 C -0.108 4.108
9 N -0.132 5.132
10 C -0.092 4.092
11 C 0.346 3.654
12 O -0.375 6.375
13 N -0.360 5.360
14 C 0.019 3.981
15 H 0.108 0.892
16 C -0.154 4.154
17 C -0.165 4.165
18 C 0.056 3.944
19 H 0.044 0.956
20 C -0.191 4.191
21 N -0.315 5.315
22 C -0.403 4.403
23 H 0.095 0.905
24 C -0.149 4.149
25 N -0.513 5.513
26 Si 0.666 3.334
27 H -0.216 1.216
28 H -0.225 1.225
29 H -0.186 1.186
30 C 0.014 3.986
31 H 0.092 0.908
32 H 0.094 0.906
33 H 0.088 0.912
34 H 0.088 0.912
35 H 0.092 0.908
36 H 0.091 0.909
37 H 0.078 0.922
38 H 0.163 0.837
39 H 0.158 0.842
40 H 0.180 0.820
41 H 0.236 0.764
42 H 0.078 0.922
43 H 0.074 0.926
44 H 0.083 0.917
45 H 0.075 0.925
46 H 0.082 0.918
47 H 0.056 0.944
48 H 0.075 0.925
49 H 0.072 0.928
50 H 0.089 0.911
51 H 0.041 0.959
Dipole moment (debyes) X Y Z Total
from point charges 15.487 9.503 -10.899 21.189
hybrid contribution 0.711 -0.675 -1.763 2.017
sum 16.198 8.828 -12.662 22.375
Atomic orbital electron populations
1.21824 0.91636 1.03889 1.03182 1.22619 0.96481 0.92526 0.87140
1.22396 1.01642 0.96078 1.03610 1.86543 1.25513 1.66883 1.38120
1.20056 0.85736 0.91549 0.93468 1.21784 0.95809 1.04786 0.98360
1.22163 0.95388 0.95894 0.99712 1.22656 1.00018 0.99206 0.88962
1.67614 1.03210 1.15284 1.27129 1.20900 0.92344 1.01085 0.94837
1.17595 0.85849 0.79616 0.82300 1.90911 1.17722 1.48144 1.80736
1.45929 1.19408 1.55502 1.15139 1.21826 0.92387 1.01788 0.82084
0.89245 1.21674 0.97635 1.00951 0.95150 1.22019 0.98151 1.00823
0.95518 1.20613 0.91965 0.93711 0.88099 0.95623 1.21759 0.99196
1.02971 0.95188 1.44280 1.03220 1.82646 1.01311 1.18559 0.79833
1.29915 1.11984 0.90520 1.25549 0.94720 0.97781 0.96892 1.70104
1.16492 1.37421 1.27324 0.87399 0.81063 0.87364 0.77547 1.21580
1.22508 1.18621 1.21616 0.94394 0.92631 0.89997 0.90794 0.90605
0.91200 0.91160 0.90846 0.90903 0.92220 0.83656 0.84183 0.81988
0.76383 0.92197 0.92606 0.91735 0.92454 0.91845 0.94373 0.92500
0.92836 0.91084 0.95905
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.58 9.56 37.16 0.36 -1.23 16
2 C 0.07 0.74 2.86 -26.73 -0.08 0.67 16
3 C -0.18 -1.56 9.19 37.16 0.34 -1.22 16
4 O -0.26 -4.06 7.87 -40.57 -0.32 -4.38 16
5 C 0.14 2.05 6.59 -38.55 -0.25 1.80 16
6 C -0.18 -1.83 8.31 -39.14 -0.33 -2.15 16
7 C -0.11 -0.93 10.10 -39.36 -0.40 -1.33 16
8 C 0.05 0.51 11.17 -17.55 -0.20 0.32 16
9 N -0.42 -5.68 9.54 -9.71 -0.09 -5.78 16
10 C 0.05 0.76 6.76 -82.89 -0.56 0.20 16
11 C 0.56 10.88 7.77 -12.34 -0.10 10.79 16
12 O -0.50 -11.66 14.80 -16.64 -0.25 -11.91 16
13 N -0.71 -12.54 5.07 -54.64 -0.28 -12.82 16
14 C 0.12 2.45 2.60 -67.81 -0.18 2.27 16
15 H 0.09 2.00 7.58 -51.93 -0.39 1.61 16
16 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16
17 C -0.13 -2.12 5.37 -26.61 -0.14 -2.27 16
18 C 0.16 3.27 3.50 -67.60 -0.24 3.04 16
19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
20 C -0.13 -2.55 8.06 37.16 0.30 -2.25 16
21 N -0.59 -14.50 2.48 -164.77 -0.41 -14.90 16
22 C -0.28 -7.81 8.44 -15.06 -0.13 -7.94 16
23 H 0.08 2.30 6.81 -52.49 -0.36 1.95 16
24 C 0.05 1.59 4.80 -17.43 -0.08 1.51 16
25 N -0.88 -27.39 13.97 55.49 0.78 -26.62 16
26 Si 0.84 22.47 27.38 -169.99 -4.65 17.82 16
27 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16
28 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16
29 H -0.26 -6.79 5.25 56.52 0.30 -6.49 16
30 C 0.14 3.32 4.16 -3.71 -0.02 3.30 16
31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16
34 H 0.07 0.61 6.27 -51.93 -0.33 0.29 16
35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
37 H 0.06 0.49 7.00 -51.93 -0.36 0.13 16
38 H 0.15 1.07 5.67 -52.49 -0.30 0.78 16
39 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16
40 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16
41 H 0.40 6.10 7.93 -40.82 -0.32 5.78 16
42 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16
43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16
45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16
46 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16
47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
48 H 0.06 1.13 7.42 -51.93 -0.39 0.75 16
49 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16
50 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16
51 H 0.02 0.54 6.72 -51.93 -0.35 0.20 16
LS Contribution 399.21 15.07 6.02 6.02
Total: -1.00 -35.35 399.21 -9.33 -44.68
By element:
Atomic # 1 Polarization: 12.69 SS G_CDS: -8.29 Total: 4.40 kcal
Atomic # 6 Polarization: 5.33 SS G_CDS: -1.83 Total: 3.49 kcal
Atomic # 7 Polarization: -60.11 SS G_CDS: 0.00 Total: -60.12 kcal
Atomic # 8 Polarization: -15.73 SS G_CDS: -0.57 Total: -16.29 kcal
Atomic # 14 Polarization: 22.47 SS G_CDS: -4.65 Total: 17.82 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -35.35 -9.33 -44.68 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001072037114.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.998 kcal
(2) G-P(sol) polarization free energy of solvation -35.349 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.351 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.684 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds