Wall clock time and date at job start Wed Apr 1 2020 05:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47478 * 2 1 4 4 O 1.42911 * 109.47372 * 119.99726 * 2 1 3 5 5 C 1.35639 * 117.00285 * 156.85641 * 4 2 1 6 6 C 1.39352 * 120.54155 * 1.55003 * 5 4 2 7 7 C 1.38303 * 118.43806 * 180.28810 * 6 5 4 8 8 C 1.38768 * 119.44425 * 359.73174 * 7 6 5 9 9 N 1.31371 * 121.06822 * 0.02562 * 8 7 6 10 10 C 1.32855 * 121.69958 * 359.97438 * 9 8 7 11 11 C 1.47824 * 119.78711 * 179.97438 * 10 9 8 12 12 O 1.21560 * 120.00434 * 179.97438 * 11 10 9 13 13 N 1.34779 * 119.99988 * 359.97438 * 11 10 9 14 14 C 1.46499 * 120.00202 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.52222 * 324.91589 * 14 13 11 16 16 C 1.53042 * 109.49958 * 204.83894 * 14 13 11 17 17 C 1.53038 * 109.54016 * 178.68309 * 16 14 13 18 18 C 1.53200 * 109.31426 * 61.36150 * 17 16 14 19 19 H 1.09001 * 109.58238 * 65.14798 * 18 17 16 20 20 C 1.52996 * 109.58807 * 185.57932 * 18 17 16 21 21 N 1.46923 * 108.77617 * 305.37039 * 18 17 16 22 22 C 1.36936 * 120.62966 * 233.63367 * 21 18 17 23 23 H 1.08002 * 120.00524 * 40.48993 * 22 21 18 24 24 C 1.38818 * 119.99956 * 220.49924 * 22 21 18 25 25 N 1.31615 * 120.00067 * 215.30178 * 24 22 21 26 26 Si 1.86798 * 119.99850 * 35.29579 * 24 22 21 27 27 H 1.48502 * 109.46940 * 84.85893 * 26 24 22 28 28 H 1.48498 * 109.47245 * 204.85622 * 26 24 22 29 29 H 1.48497 * 109.47350 * 324.85841 * 26 24 22 30 30 C 1.46930 * 118.74107 * 53.60275 * 21 18 17 31 31 H 1.09000 * 109.46687 * 300.00193 * 1 2 3 32 32 H 1.08997 * 109.46789 * 60.00190 * 1 2 3 33 33 H 1.08998 * 109.47389 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47487 * 239.99345 * 2 1 3 35 35 H 1.08998 * 109.46479 * 299.99936 * 3 2 1 36 36 H 1.08993 * 109.47154 * 59.99550 * 3 2 1 37 37 H 1.08998 * 109.47381 * 180.02562 * 3 2 1 38 38 H 1.08001 * 120.77853 * 0.02743 * 6 5 4 39 39 H 1.08003 * 120.27519 * 179.75813 * 7 6 5 40 40 H 1.08000 * 119.46054 * 179.97438 * 8 7 6 41 41 H 0.97002 * 119.99686 * 359.97438 * 13 11 10 42 42 H 1.09007 * 109.45606 * 298.70503 * 16 14 13 43 43 H 1.08998 * 109.46118 * 58.65893 * 16 14 13 44 44 H 1.08995 * 109.49428 * 301.41390 * 17 16 14 45 45 H 1.08995 * 109.52407 * 181.33274 * 17 16 14 46 46 H 1.09000 * 109.47115 * 179.28997 * 20 18 17 47 47 H 1.08999 * 109.46712 * 299.28876 * 20 18 17 48 48 H 1.08996 * 109.47053 * 59.28973 * 20 18 17 49 49 H 0.96999 * 120.00176 * 179.97438 * 25 24 22 50 50 H 1.09001 * 109.58514 * 186.61171 * 30 21 18 51 51 H 1.08991 * 109.70442 * 66.25293 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2594 -1.1901 1.1114 6 6 4.0415 -1.0298 -0.0308 7 6 5.3105 -1.5794 -0.0425 8 6 5.7678 -2.2638 1.0747 9 7 5.0147 -2.3984 2.1426 10 6 3.7894 -1.8884 2.2015 11 6 2.9782 -2.0656 3.4245 12 8 1.8567 -1.6002 3.4829 13 7 3.4820 -2.7432 4.4750 14 6 2.6779 -2.9194 5.6869 15 1 2.0683 -2.0309 5.8519 16 6 3.6029 -3.1342 6.8870 17 6 2.7649 -3.2856 8.1586 18 6 1.8557 -4.5112 8.0233 19 1 2.4646 -5.4139 7.9723 20 6 0.9173 -4.5893 9.2292 21 7 1.0654 -4.3801 6.7917 22 6 -0.3000 -4.4785 6.8252 23 1 -0.8548 -4.0221 7.6317 24 6 -0.9712 -5.1650 5.8226 25 7 -2.1494 -4.7453 5.4128 26 14 -0.2021 -6.6844 5.0550 27 1 -0.5172 -7.8730 5.8876 28 1 -0.7484 -6.8788 3.6879 29 1 1.2705 -6.5093 4.9793 30 6 1.7678 -4.1408 5.5236 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9564 0.8899 37 1 3.1300 1.4425 -0.0005 38 1 3.6638 -0.4926 -0.8883 39 1 5.9405 -1.4764 -0.9137 40 1 6.7587 -2.6934 1.0657 41 1 4.3767 -3.1149 4.4283 42 1 4.1946 -4.0366 6.7324 43 1 4.2684 -2.2772 6.9905 44 1 2.1546 -2.3938 8.3002 45 1 3.4247 -3.4149 9.0164 46 1 0.2629 -5.4547 9.1248 47 1 1.5056 -4.6865 10.1416 48 1 0.3150 -3.6823 9.2801 49 1 -2.6183 -5.2247 4.7120 50 1 1.0411 -3.9520 4.7334 51 1 2.3691 -5.0127 5.2663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072037114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:14 Heat of formation + Delta-G solvation = -14.683694 kcal Electronic energy + Delta-G solvation = -31870.227906 eV Core-core repulsion = 27770.744393 eV Total energy + Delta-G solvation = -4099.483513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.07157 -39.21282 -38.56415 -37.52434 -34.39602 -33.44554 -32.78658 -32.52260 -30.81341 -30.58695 -30.03310 -27.50326 -26.24227 -25.04840 -24.48633 -23.70594 -22.39727 -21.43606 -20.88683 -20.10507 -19.34774 -18.52607 -17.63282 -17.03427 -16.39538 -15.83933 -15.63852 -15.28130 -14.97716 -14.66145 -14.61436 -14.33372 -14.20754 -13.76806 -13.52435 -13.42043 -13.32268 -13.13771 -12.77928 -12.67511 -12.47547 -12.40268 -12.32165 -12.12764 -11.92749 -11.68258 -11.34194 -11.21858 -11.09630 -10.97266 -10.66476 -10.53171 -10.38456 -10.17865 -10.09571 -10.01241 -9.90369 -9.64390 -9.46556 -9.32036 -8.64944 -8.47632 -8.18548 -6.60057 -5.97033 -3.25583 0.56625 1.04127 2.91258 2.97186 3.41393 3.49801 3.58683 3.64189 3.89388 4.18013 4.34361 4.46871 4.56199 4.66677 4.69491 4.78738 4.83701 4.92849 5.08237 5.27516 5.30932 5.32673 5.38912 5.43713 5.52350 5.56053 5.63577 5.64835 5.71240 5.74362 5.89848 5.92915 6.07597 6.10539 6.18240 6.21988 6.28514 6.39908 6.43220 6.48793 6.62823 6.70999 6.84158 6.94511 7.10499 7.13569 7.16757 7.25322 7.57924 8.02309 8.14342 8.54059 8.68381 9.11440 9.84329 10.32398 11.18360 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011088 B = 0.003527 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.647140 B = 7937.808064 C = 8970.311177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 C -0.180 4.180 4 O -0.261 6.261 5 C 0.143 3.857 6 C -0.181 4.181 7 C -0.112 4.112 8 C 0.052 3.948 9 N -0.421 5.421 10 C 0.048 3.952 11 C 0.563 3.437 12 O -0.502 6.502 13 N -0.708 5.708 14 C 0.124 3.876 15 H 0.089 0.911 16 C -0.116 4.116 17 C -0.125 4.125 18 C 0.162 3.838 19 H 0.026 0.974 20 C -0.134 4.134 21 N -0.590 5.590 22 C -0.275 4.275 23 H 0.077 0.923 24 C 0.054 3.946 25 N -0.875 5.875 26 Si 0.839 3.161 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.261 1.261 30 C 0.141 3.859 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.163 0.837 41 H 0.401 0.599 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.056 0.944 49 H 0.262 0.738 50 H 0.071 0.929 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.419 9.606 -11.777 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 C -0.237 4.237 4 O -0.171 6.171 5 C 0.092 3.908 6 C -0.207 4.207 7 C -0.132 4.132 8 C -0.108 4.108 9 N -0.132 5.132 10 C -0.092 4.092 11 C 0.346 3.654 12 O -0.375 6.375 13 N -0.360 5.360 14 C 0.019 3.981 15 H 0.108 0.892 16 C -0.154 4.154 17 C -0.165 4.165 18 C 0.056 3.944 19 H 0.044 0.956 20 C -0.191 4.191 21 N -0.315 5.315 22 C -0.403 4.403 23 H 0.095 0.905 24 C -0.149 4.149 25 N -0.513 5.513 26 Si 0.666 3.334 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.186 1.186 30 C 0.014 3.986 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.236 0.764 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.056 0.944 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 15.487 9.503 -10.899 21.189 hybrid contribution 0.711 -0.675 -1.763 2.017 sum 16.198 8.828 -12.662 22.375 Atomic orbital electron populations 1.21824 0.91636 1.03889 1.03182 1.22619 0.96481 0.92526 0.87140 1.22396 1.01642 0.96078 1.03610 1.86543 1.25513 1.66883 1.38120 1.20056 0.85736 0.91549 0.93468 1.21784 0.95809 1.04786 0.98360 1.22163 0.95388 0.95894 0.99712 1.22656 1.00018 0.99206 0.88962 1.67614 1.03210 1.15284 1.27129 1.20900 0.92344 1.01085 0.94837 1.17595 0.85849 0.79616 0.82300 1.90911 1.17722 1.48144 1.80736 1.45929 1.19408 1.55502 1.15139 1.21826 0.92387 1.01788 0.82084 0.89245 1.21674 0.97635 1.00951 0.95150 1.22019 0.98151 1.00823 0.95518 1.20613 0.91965 0.93711 0.88099 0.95623 1.21759 0.99196 1.02971 0.95188 1.44280 1.03220 1.82646 1.01311 1.18559 0.79833 1.29915 1.11984 0.90520 1.25549 0.94720 0.97781 0.96892 1.70104 1.16492 1.37421 1.27324 0.87399 0.81063 0.87364 0.77547 1.21580 1.22508 1.18621 1.21616 0.94394 0.92631 0.89997 0.90794 0.90605 0.91200 0.91160 0.90846 0.90903 0.92220 0.83656 0.84183 0.81988 0.76383 0.92197 0.92606 0.91735 0.92454 0.91845 0.94373 0.92500 0.92836 0.91084 0.95905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.56 37.16 0.36 -1.23 16 2 C 0.07 0.74 2.86 -26.73 -0.08 0.67 16 3 C -0.18 -1.56 9.19 37.16 0.34 -1.22 16 4 O -0.26 -4.06 7.87 -40.57 -0.32 -4.38 16 5 C 0.14 2.05 6.59 -38.55 -0.25 1.80 16 6 C -0.18 -1.83 8.31 -39.14 -0.33 -2.15 16 7 C -0.11 -0.93 10.10 -39.36 -0.40 -1.33 16 8 C 0.05 0.51 11.17 -17.55 -0.20 0.32 16 9 N -0.42 -5.68 9.54 -9.71 -0.09 -5.78 16 10 C 0.05 0.76 6.76 -82.89 -0.56 0.20 16 11 C 0.56 10.88 7.77 -12.34 -0.10 10.79 16 12 O -0.50 -11.66 14.80 -16.64 -0.25 -11.91 16 13 N -0.71 -12.54 5.07 -54.64 -0.28 -12.82 16 14 C 0.12 2.45 2.60 -67.81 -0.18 2.27 16 15 H 0.09 2.00 7.58 -51.93 -0.39 1.61 16 16 C -0.12 -1.88 5.35 -26.69 -0.14 -2.02 16 17 C -0.13 -2.12 5.37 -26.61 -0.14 -2.27 16 18 C 0.16 3.27 3.50 -67.60 -0.24 3.04 16 19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.13 -2.55 8.06 37.16 0.30 -2.25 16 21 N -0.59 -14.50 2.48 -164.77 -0.41 -14.90 16 22 C -0.28 -7.81 8.44 -15.06 -0.13 -7.94 16 23 H 0.08 2.30 6.81 -52.49 -0.36 1.95 16 24 C 0.05 1.59 4.80 -17.43 -0.08 1.51 16 25 N -0.88 -27.39 13.97 55.49 0.78 -26.62 16 26 Si 0.84 22.47 27.38 -169.99 -4.65 17.82 16 27 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 28 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 29 H -0.26 -6.79 5.25 56.52 0.30 -6.49 16 30 C 0.14 3.32 4.16 -3.71 -0.02 3.30 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.61 6.27 -51.93 -0.33 0.29 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.49 7.00 -51.93 -0.36 0.13 16 38 H 0.15 1.07 5.67 -52.49 -0.30 0.78 16 39 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.40 6.10 7.93 -40.82 -0.32 5.78 16 42 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.31 7.68 -51.93 -0.40 0.91 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 1.13 7.42 -51.93 -0.39 0.75 16 49 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 50 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16 51 H 0.02 0.54 6.72 -51.93 -0.35 0.20 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -35.35 399.21 -9.33 -44.68 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.29 Total: 4.40 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.83 Total: 3.49 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.00 Total: -60.12 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.57 Total: -16.29 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.65 Total: 17.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.35 -9.33 -44.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072037114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.998 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds