Wall clock time and date at job start Wed Apr 1 2020 05:31:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52994 * 109.47057 * 2 1
4 4 O 1.42901 * 109.46580 * 119.99568 * 2 1 3
5 5 C 1.35726 * 116.99634 * 154.14085 * 4 2 1
6 6 C 1.39232 * 120.38168 * 5.20904 * 5 4 2
7 7 C 1.38321 * 118.44358 * 179.70797 * 6 5 4
8 8 C 1.39473 * 119.13424 * 0.51380 * 7 6 5
9 9 C 1.47926 * 119.65983 * 179.75448 * 8 7 6
10 10 O 1.21546 * 120.00181 * 359.72337 * 9 8 7
11 11 N 1.34774 * 119.99827 * 179.72978 * 9 8 7
12 12 C 1.46507 * 119.99606 * 179.97438 * 11 9 8
13 13 H 1.08994 * 109.52826 * 35.08277 * 12 11 9
14 14 C 1.53045 * 109.49518 * 155.15997 * 12 11 9
15 15 C 1.53046 * 109.53473 * 58.58469 * 14 12 11
16 16 C 1.53198 * 109.30968 * 61.36799 * 15 14 12
17 17 H 1.09000 * 109.58704 * 65.15217 * 16 15 14
18 18 C 1.52998 * 109.58293 * 185.57421 * 16 15 14
19 19 N 1.46917 * 108.77363 * 305.36000 * 16 15 14
20 20 C 1.36939 * 120.63083 * 233.63251 * 19 16 15
21 21 H 1.07999 * 119.99787 * 28.39790 * 20 19 16
22 22 C 1.38813 * 120.00087 * 208.40346 * 20 19 16
23 23 N 1.31614 * 120.00076 * 14.73252 * 22 20 19
24 24 Si 1.86800 * 119.99890 * 194.73619 * 22 20 19
25 25 H 1.48498 * 109.47170 * 0.02562 * 24 22 20
26 26 H 1.48507 * 109.46889 * 119.99755 * 24 22 20
27 27 H 1.48493 * 109.47300 * 239.99568 * 24 22 20
28 28 C 1.46924 * 118.74272 * 53.61095 * 19 16 15
29 29 N 1.32799 * 120.68072 * 359.47450 * 8 7 6
30 30 C 1.31379 * 121.69539 * 0.27676 * 29 8 7
31 31 H 1.08995 * 109.47225 * 300.00059 * 1 2 3
32 32 H 1.08998 * 109.46808 * 60.00255 * 1 2 3
33 33 H 1.09000 * 109.47490 * 180.02562 * 1 2 3
34 34 H 1.08996 * 109.47114 * 239.99164 * 2 1 3
35 35 H 1.08996 * 109.47841 * 59.99609 * 3 2 1
36 36 H 1.09000 * 109.47197 * 179.97438 * 3 2 1
37 37 H 1.09008 * 109.47105 * 299.99523 * 3 2 1
38 38 H 1.08000 * 120.77911 * 0.02562 * 6 5 4
39 39 H 1.07996 * 120.43551 * 180.26588 * 7 6 5
40 40 H 0.96997 * 120.00594 * 359.97438 * 11 9 8
41 41 H 1.08994 * 109.45901 * 178.60432 * 14 12 11
42 42 H 1.09003 * 109.46269 * 298.56812 * 14 12 11
43 43 H 1.08994 * 109.50122 * 301.41454 * 15 14 12
44 44 H 1.09002 * 109.51909 * 181.32913 * 15 14 12
45 45 H 1.08999 * 109.47105 * 179.28748 * 18 16 15
46 46 H 1.09002 * 109.47151 * 299.28865 * 18 16 15
47 47 H 1.08999 * 109.47149 * 59.28762 * 18 16 15
48 48 H 0.97001 * 120.00390 * 179.97438 * 23 22 20
49 49 H 1.08992 * 109.58942 * 186.60214 * 28 19 16
50 50 H 1.09005 * 109.70009 * 66.24740 * 28 19 16
51 51 H 1.08000 * 119.59245 * 179.97438 * 30 29 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 8 2.0062 -0.6736 1.1669
5 6 3.2376 -1.2395 1.0922
6 6 4.0268 -1.0615 -0.0410
7 6 5.2777 -1.6512 -0.0719
8 6 5.6988 -2.4081 1.0213
9 6 7.0320 -3.0485 0.9982
10 8 7.7523 -2.9178 0.0280
11 7 7.4481 -3.7768 2.0531
12 6 8.7683 -4.4115 2.0301
13 1 9.4713 -3.7708 1.4978
14 6 9.2574 -4.6253 3.4644
15 6 8.2542 -5.4980 4.2224
16 6 8.1526 -6.8645 3.5374
17 1 9.1059 -7.3865 3.6198
18 6 7.0521 -7.6920 4.2046
19 7 7.8241 -6.6597 2.1201
20 6 6.7474 -7.2899 1.5553
21 1 5.8944 -7.5514 2.1639
22 6 6.7524 -7.5926 0.2006
23 7 7.8781 -7.5465 -0.4799
24 14 5.1615 -8.0653 -0.6567
25 1 4.0456 -8.0419 0.3228
26 1 4.8814 -7.0984 -1.7485
27 1 5.2927 -9.4304 -1.2260
28 6 8.6723 -5.7656 1.3203
29 7 4.9174 -2.5553 2.0849
30 6 3.7263 -2.0044 2.1480
31 1 -0.3633 0.5138 0.8899
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 -1.0276 0.0005
34 1 1.8933 -0.5139 -0.8899
35 1 1.6767 1.9564 0.8899
36 1 3.1300 1.4425 0.0005
37 1 1.6767 1.9563 -0.8901
38 1 3.6728 -0.4725 -0.8741
39 1 5.9182 -1.5305 -0.9330
40 1 6.8734 -3.8809 2.8276
41 1 10.2285 -5.1199 3.4470
42 1 9.3500 -3.6610 3.9641
43 1 7.2768 -5.0157 4.2188
44 1 8.5909 -5.6306 5.2506
45 1 6.9728 -8.6589 3.7077
46 1 7.2977 -7.8427 5.2558
47 1 6.1019 -7.1639 4.1255
48 1 7.8817 -7.7584 -1.4264
49 1 8.2314 -5.6301 0.3328
50 1 9.6684 -6.1968 1.2196
51 1 3.1189 -2.1466 3.0296
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001072127808.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:21
Heat of formation + Delta-G solvation = -19.311536 kcal
Electronic energy + Delta-G solvation = -31785.451332 eV
Core-core repulsion = 27685.767141 eV
Total energy + Delta-G solvation = -4099.684191 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.16 seconds
Orbital eigenvalues (eV)
-40.92713 -39.51205 -38.41945 -37.25627 -34.07662 -33.68180 -32.71303 -32.29773
-30.99550 -29.95795 -29.64732 -27.72240 -26.19547 -25.02787 -24.54168 -23.61491
-22.09699 -21.85046 -20.74430 -20.20791 -18.65860 -18.62250 -17.76157 -16.88327
-16.19924 -15.86755 -15.41482 -15.23024 -14.81093 -14.72958 -14.50327 -14.14239
-13.92715 -13.88906 -13.55965 -13.44947 -13.27537 -13.04643 -12.81922 -12.68241
-12.62306 -12.51486 -12.36193 -12.19938 -11.80160 -11.35007 -11.17160 -11.12828
-11.09328 -10.89162 -10.78570 -10.65904 -10.30075 -10.24307 -9.92207 -9.89053
-9.87661 -9.49380 -9.36827 -9.27427 -8.54278 -8.38124 -8.20700 -6.52744
-5.67077 -3.10067 0.80983 1.14122 2.76987 3.11746 3.41862 3.49605
3.50821 3.70392 4.11244 4.30289 4.35781 4.45618 4.50144 4.56610
4.64111 4.76515 5.05361 5.07937 5.12067 5.28486 5.33186 5.36531
5.39506 5.44247 5.52266 5.60071 5.65856 5.68872 5.71408 5.72688
5.88824 5.96076 6.09956 6.20453 6.21570 6.26803 6.41338 6.42909
6.52599 6.60799 6.70313 6.78007 6.98592 7.02661 7.12344 7.21689
7.46630 7.74474 7.81813 7.91831 8.26126 8.56903 8.84802 9.31600
9.96274 10.51616 11.40727
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011275 B = 0.003340 C = 0.003018
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2482.696458 B = 8381.237347 C = 9274.198603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.073 3.927
3 C -0.181 4.181
4 O -0.301 6.301
5 C 0.096 3.904
6 C -0.178 4.178
7 C -0.071 4.071
8 C 0.052 3.948
9 C 0.570 3.430
10 O -0.545 6.545
11 N -0.677 5.677
12 C 0.115 3.885
13 H 0.076 0.924
14 C -0.118 4.118
15 C -0.132 4.132
16 C 0.166 3.834
17 H 0.024 0.976
18 C -0.136 4.136
19 N -0.582 5.582
20 C -0.243 4.243
21 H 0.069 0.931
22 C 0.004 3.996
23 N -0.901 5.901
24 Si 0.893 3.107
25 H -0.279 1.279
26 H -0.291 1.291
27 H -0.291 1.291
28 C 0.161 3.839
29 N -0.415 5.415
30 C 0.075 3.925
31 H 0.068 0.932
32 H 0.077 0.923
33 H 0.067 0.933
34 H 0.076 0.924
35 H 0.069 0.931
36 H 0.063 0.937
37 H 0.073 0.927
38 H 0.144 0.856
39 H 0.150 0.850
40 H 0.406 0.594
41 H 0.070 0.930
42 H 0.051 0.949
43 H 0.058 0.942
44 H 0.052 0.948
45 H 0.060 0.940
46 H 0.037 0.963
47 H 0.052 0.948
48 H 0.251 0.749
49 H 0.100 0.900
50 H 0.025 0.975
51 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.846 16.565 4.675 19.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.016 3.984
3 C -0.238 4.238
4 O -0.213 6.213
5 C 0.048 3.952
6 C -0.204 4.204
7 C -0.092 4.092
8 C -0.086 4.086
9 C 0.355 3.645
10 O -0.422 6.422
11 N -0.327 5.327
12 C 0.010 3.990
13 H 0.094 0.906
14 C -0.156 4.156
15 C -0.171 4.171
16 C 0.059 3.941
17 H 0.042 0.958
18 C -0.193 4.193
19 N -0.305 5.305
20 C -0.373 4.373
21 H 0.086 0.914
22 C -0.195 4.195
23 N -0.546 5.546
24 Si 0.724 3.276
25 H -0.204 1.204
26 H -0.218 1.218
27 H -0.218 1.218
28 C 0.034 3.966
29 N -0.126 5.126
30 C -0.087 4.087
31 H 0.087 0.913
32 H 0.096 0.904
33 H 0.086 0.914
34 H 0.094 0.906
35 H 0.088 0.912
36 H 0.082 0.918
37 H 0.092 0.908
38 H 0.162 0.838
39 H 0.168 0.832
40 H 0.242 0.758
41 H 0.089 0.911
42 H 0.070 0.930
43 H 0.076 0.924
44 H 0.071 0.929
45 H 0.079 0.921
46 H 0.056 0.944
47 H 0.071 0.929
48 H 0.062 0.938
49 H 0.118 0.882
50 H 0.043 0.957
51 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -9.100 16.081 4.673 19.059
hybrid contribution -1.397 0.235 -1.204 1.859
sum -10.498 16.315 3.469 19.709
Atomic orbital electron populations
1.21860 0.92134 1.03441 1.03151 1.22540 0.95723 0.92723 0.87377
1.22386 1.02262 0.95782 1.03355 1.86103 1.29325 1.67183 1.38736
1.20397 0.85549 0.93775 0.95528 1.21690 0.95491 1.04489 0.98778
1.21960 0.95137 0.93235 0.98883 1.21263 0.96048 0.99751 0.91552
1.17578 0.84456 0.79109 0.83402 1.90758 1.55271 1.63011 1.33201
1.45693 1.18978 1.49011 1.19002 1.21855 0.83053 0.97478 0.96643
0.90604 1.21685 0.99458 0.99144 0.95310 1.22080 0.98692 0.98427
0.97922 1.20456 0.95712 0.91839 0.86077 0.95795 1.21797 0.99067
1.00919 0.97548 1.44041 1.31774 1.50355 1.04373 1.19145 0.93840
1.32039 0.92238 0.91385 1.25005 0.96184 1.00005 0.98260 1.69981
1.23887 1.52642 1.08046 0.86353 0.83841 0.77652 0.79770 1.20384
1.21832 1.21796 1.21215 0.94335 0.84678 0.96378 1.67630 1.03593
1.16409 1.25004 1.22222 0.92827 0.95713 0.97982 0.91323 0.90397
0.91433 0.90628 0.91239 0.91768 0.90795 0.83838 0.83203 0.75784
0.91114 0.93027 0.92385 0.92894 0.92117 0.94448 0.92871 0.93836
0.88232 0.95682 0.81533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.92 9.56 37.16 0.36 -0.56 16
2 C 0.07 0.57 2.84 -26.73 -0.08 0.49 16
3 C -0.18 -1.18 9.21 37.15 0.34 -0.83 16
4 O -0.30 -3.23 9.80 -18.89 -0.19 -3.41 16
5 C 0.10 1.18 6.64 -38.84 -0.26 0.93 16
6 C -0.18 -2.16 8.37 -39.18 -0.33 -2.49 16
7 C -0.07 -1.07 9.62 -39.09 -0.38 -1.45 16
8 C 0.05 0.91 6.75 -83.02 -0.56 0.35 16
9 C 0.57 11.68 7.77 -12.29 -0.10 11.59 16
10 O -0.54 -12.54 15.98 5.33 0.09 -12.45 16
11 N -0.68 -13.26 4.90 -54.60 -0.27 -13.53 16
12 C 0.12 2.30 2.81 -67.81 -0.19 2.11 16
13 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16
14 C -0.12 -1.95 5.59 -26.68 -0.15 -2.10 16
15 C -0.13 -2.21 5.21 -26.60 -0.14 -2.35 16
16 C 0.17 3.37 3.50 -67.60 -0.24 3.13 16
17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
18 C -0.14 -2.54 7.94 37.16 0.29 -2.25 16
19 N -0.58 -14.22 2.91 -164.78 -0.48 -14.69 16
20 C -0.24 -6.58 8.62 -15.06 -0.13 -6.71 16
21 H 0.07 1.82 6.18 -52.49 -0.32 1.50 16
22 C 0.00 0.11 4.97 -17.43 -0.09 0.02 16
23 N -0.90 -26.87 11.07 55.49 0.61 -26.25 16
24 Si 0.89 22.60 29.58 -169.99 -5.03 17.57 16
25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16
27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
28 C 0.16 3.93 4.89 -3.71 -0.02 3.91 16
29 N -0.41 -6.75 9.53 -9.68 -0.09 -6.84 16
30 C 0.07 1.01 11.14 -17.38 -0.19 0.81 16
31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
34 H 0.08 0.57 6.27 -51.93 -0.33 0.25 16
35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
36 H 0.06 0.47 7.05 -51.93 -0.37 0.10 16
37 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16
38 H 0.14 1.31 5.62 -52.49 -0.29 1.02 16
39 H 0.15 2.17 7.63 -52.49 -0.40 1.77 16
40 H 0.41 7.56 6.09 -40.82 -0.25 7.31 16
41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
43 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16
44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
45 H 0.06 1.24 7.61 -51.93 -0.40 0.84 16
46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
47 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16
48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
49 H 0.10 2.86 6.00 -51.93 -0.31 2.55 16
50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16
51 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16
LS Contribution 400.34 15.07 6.03 6.03
Total: -1.00 -32.49 400.34 -9.15 -41.64
By element:
Atomic # 1 Polarization: 15.32 SS G_CDS: -7.99 Total: 7.33 kcal
Atomic # 6 Polarization: 6.45 SS G_CDS: -1.84 Total: 4.61 kcal
Atomic # 7 Polarization: -61.09 SS G_CDS: -0.23 Total: -61.31 kcal
Atomic # 8 Polarization: -15.77 SS G_CDS: -0.10 Total: -15.87 kcal
Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -32.49 -9.15 -41.64 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001072127808.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.329 kcal
(2) G-P(sol) polarization free energy of solvation -32.488 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.159 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds