Wall clock time and date at job start Wed Apr 1 2020 05:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47057 * 2 1 4 4 O 1.42901 * 109.46580 * 119.99568 * 2 1 3 5 5 C 1.35726 * 116.99634 * 154.14085 * 4 2 1 6 6 C 1.39232 * 120.38168 * 5.20904 * 5 4 2 7 7 C 1.38321 * 118.44358 * 179.70797 * 6 5 4 8 8 C 1.39473 * 119.13424 * 0.51380 * 7 6 5 9 9 C 1.47926 * 119.65983 * 179.75448 * 8 7 6 10 10 O 1.21546 * 120.00181 * 359.72337 * 9 8 7 11 11 N 1.34774 * 119.99827 * 179.72978 * 9 8 7 12 12 C 1.46507 * 119.99606 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.52826 * 35.08277 * 12 11 9 14 14 C 1.53045 * 109.49518 * 155.15997 * 12 11 9 15 15 C 1.53046 * 109.53473 * 58.58469 * 14 12 11 16 16 C 1.53198 * 109.30968 * 61.36799 * 15 14 12 17 17 H 1.09000 * 109.58704 * 65.15217 * 16 15 14 18 18 C 1.52998 * 109.58293 * 185.57421 * 16 15 14 19 19 N 1.46917 * 108.77363 * 305.36000 * 16 15 14 20 20 C 1.36939 * 120.63083 * 233.63251 * 19 16 15 21 21 H 1.07999 * 119.99787 * 28.39790 * 20 19 16 22 22 C 1.38813 * 120.00087 * 208.40346 * 20 19 16 23 23 N 1.31614 * 120.00076 * 14.73252 * 22 20 19 24 24 Si 1.86800 * 119.99890 * 194.73619 * 22 20 19 25 25 H 1.48498 * 109.47170 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46889 * 119.99755 * 24 22 20 27 27 H 1.48493 * 109.47300 * 239.99568 * 24 22 20 28 28 C 1.46924 * 118.74272 * 53.61095 * 19 16 15 29 29 N 1.32799 * 120.68072 * 359.47450 * 8 7 6 30 30 C 1.31379 * 121.69539 * 0.27676 * 29 8 7 31 31 H 1.08995 * 109.47225 * 300.00059 * 1 2 3 32 32 H 1.08998 * 109.46808 * 60.00255 * 1 2 3 33 33 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47114 * 239.99164 * 2 1 3 35 35 H 1.08996 * 109.47841 * 59.99609 * 3 2 1 36 36 H 1.09000 * 109.47197 * 179.97438 * 3 2 1 37 37 H 1.09008 * 109.47105 * 299.99523 * 3 2 1 38 38 H 1.08000 * 120.77911 * 0.02562 * 6 5 4 39 39 H 1.07996 * 120.43551 * 180.26588 * 7 6 5 40 40 H 0.96997 * 120.00594 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.45901 * 178.60432 * 14 12 11 42 42 H 1.09003 * 109.46269 * 298.56812 * 14 12 11 43 43 H 1.08994 * 109.50122 * 301.41454 * 15 14 12 44 44 H 1.09002 * 109.51909 * 181.32913 * 15 14 12 45 45 H 1.08999 * 109.47105 * 179.28748 * 18 16 15 46 46 H 1.09002 * 109.47151 * 299.28865 * 18 16 15 47 47 H 1.08999 * 109.47149 * 59.28762 * 18 16 15 48 48 H 0.97001 * 120.00390 * 179.97438 * 23 22 20 49 49 H 1.08992 * 109.58942 * 186.60214 * 28 19 16 50 50 H 1.09005 * 109.70009 * 66.24740 * 28 19 16 51 51 H 1.08000 * 119.59245 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.2376 -1.2395 1.0922 6 6 4.0268 -1.0615 -0.0410 7 6 5.2777 -1.6512 -0.0719 8 6 5.6988 -2.4081 1.0213 9 6 7.0320 -3.0485 0.9982 10 8 7.7523 -2.9178 0.0280 11 7 7.4481 -3.7768 2.0531 12 6 8.7683 -4.4115 2.0301 13 1 9.4713 -3.7708 1.4978 14 6 9.2574 -4.6253 3.4644 15 6 8.2542 -5.4980 4.2224 16 6 8.1526 -6.8645 3.5374 17 1 9.1059 -7.3865 3.6198 18 6 7.0521 -7.6920 4.2046 19 7 7.8241 -6.6597 2.1201 20 6 6.7474 -7.2899 1.5553 21 1 5.8944 -7.5514 2.1639 22 6 6.7524 -7.5926 0.2006 23 7 7.8781 -7.5465 -0.4799 24 14 5.1615 -8.0653 -0.6567 25 1 4.0456 -8.0419 0.3228 26 1 4.8814 -7.0984 -1.7485 27 1 5.2927 -9.4304 -1.2260 28 6 8.6723 -5.7656 1.3203 29 7 4.9174 -2.5553 2.0849 30 6 3.7263 -2.0044 2.1480 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 3.6728 -0.4725 -0.8741 39 1 5.9182 -1.5305 -0.9330 40 1 6.8734 -3.8809 2.8276 41 1 10.2285 -5.1199 3.4470 42 1 9.3500 -3.6610 3.9641 43 1 7.2768 -5.0157 4.2188 44 1 8.5909 -5.6306 5.2506 45 1 6.9728 -8.6589 3.7077 46 1 7.2977 -7.8427 5.2558 47 1 6.1019 -7.1639 4.1255 48 1 7.8817 -7.7584 -1.4264 49 1 8.2314 -5.6301 0.3328 50 1 9.6684 -6.1968 1.2196 51 1 3.1189 -2.1466 3.0296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072127808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:21 Heat of formation + Delta-G solvation = -19.311536 kcal Electronic energy + Delta-G solvation = -31785.451332 eV Core-core repulsion = 27685.767141 eV Total energy + Delta-G solvation = -4099.684191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.92713 -39.51205 -38.41945 -37.25627 -34.07662 -33.68180 -32.71303 -32.29773 -30.99550 -29.95795 -29.64732 -27.72240 -26.19547 -25.02787 -24.54168 -23.61491 -22.09699 -21.85046 -20.74430 -20.20791 -18.65860 -18.62250 -17.76157 -16.88327 -16.19924 -15.86755 -15.41482 -15.23024 -14.81093 -14.72958 -14.50327 -14.14239 -13.92715 -13.88906 -13.55965 -13.44947 -13.27537 -13.04643 -12.81922 -12.68241 -12.62306 -12.51486 -12.36193 -12.19938 -11.80160 -11.35007 -11.17160 -11.12828 -11.09328 -10.89162 -10.78570 -10.65904 -10.30075 -10.24307 -9.92207 -9.89053 -9.87661 -9.49380 -9.36827 -9.27427 -8.54278 -8.38124 -8.20700 -6.52744 -5.67077 -3.10067 0.80983 1.14122 2.76987 3.11746 3.41862 3.49605 3.50821 3.70392 4.11244 4.30289 4.35781 4.45618 4.50144 4.56610 4.64111 4.76515 5.05361 5.07937 5.12067 5.28486 5.33186 5.36531 5.39506 5.44247 5.52266 5.60071 5.65856 5.68872 5.71408 5.72688 5.88824 5.96076 6.09956 6.20453 6.21570 6.26803 6.41338 6.42909 6.52599 6.60799 6.70313 6.78007 6.98592 7.02661 7.12344 7.21689 7.46630 7.74474 7.81813 7.91831 8.26126 8.56903 8.84802 9.31600 9.96274 10.51616 11.40727 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.003340 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.696458 B = 8381.237347 C = 9274.198603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.181 4.181 4 O -0.301 6.301 5 C 0.096 3.904 6 C -0.178 4.178 7 C -0.071 4.071 8 C 0.052 3.948 9 C 0.570 3.430 10 O -0.545 6.545 11 N -0.677 5.677 12 C 0.115 3.885 13 H 0.076 0.924 14 C -0.118 4.118 15 C -0.132 4.132 16 C 0.166 3.834 17 H 0.024 0.976 18 C -0.136 4.136 19 N -0.582 5.582 20 C -0.243 4.243 21 H 0.069 0.931 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.893 3.107 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.161 3.839 29 N -0.415 5.415 30 C 0.075 3.925 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.406 0.594 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.037 0.963 47 H 0.052 0.948 48 H 0.251 0.749 49 H 0.100 0.900 50 H 0.025 0.975 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.846 16.565 4.675 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.238 4.238 4 O -0.213 6.213 5 C 0.048 3.952 6 C -0.204 4.204 7 C -0.092 4.092 8 C -0.086 4.086 9 C 0.355 3.645 10 O -0.422 6.422 11 N -0.327 5.327 12 C 0.010 3.990 13 H 0.094 0.906 14 C -0.156 4.156 15 C -0.171 4.171 16 C 0.059 3.941 17 H 0.042 0.958 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.373 4.373 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.724 3.276 25 H -0.204 1.204 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.034 3.966 29 N -0.126 5.126 30 C -0.087 4.087 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.242 0.758 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.118 0.882 50 H 0.043 0.957 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.100 16.081 4.673 19.059 hybrid contribution -1.397 0.235 -1.204 1.859 sum -10.498 16.315 3.469 19.709 Atomic orbital electron populations 1.21860 0.92134 1.03441 1.03151 1.22540 0.95723 0.92723 0.87377 1.22386 1.02262 0.95782 1.03355 1.86103 1.29325 1.67183 1.38736 1.20397 0.85549 0.93775 0.95528 1.21690 0.95491 1.04489 0.98778 1.21960 0.95137 0.93235 0.98883 1.21263 0.96048 0.99751 0.91552 1.17578 0.84456 0.79109 0.83402 1.90758 1.55271 1.63011 1.33201 1.45693 1.18978 1.49011 1.19002 1.21855 0.83053 0.97478 0.96643 0.90604 1.21685 0.99458 0.99144 0.95310 1.22080 0.98692 0.98427 0.97922 1.20456 0.95712 0.91839 0.86077 0.95795 1.21797 0.99067 1.00919 0.97548 1.44041 1.31774 1.50355 1.04373 1.19145 0.93840 1.32039 0.92238 0.91385 1.25005 0.96184 1.00005 0.98260 1.69981 1.23887 1.52642 1.08046 0.86353 0.83841 0.77652 0.79770 1.20384 1.21832 1.21796 1.21215 0.94335 0.84678 0.96378 1.67630 1.03593 1.16409 1.25004 1.22222 0.92827 0.95713 0.97982 0.91323 0.90397 0.91433 0.90628 0.91239 0.91768 0.90795 0.83838 0.83203 0.75784 0.91114 0.93027 0.92385 0.92894 0.92117 0.94448 0.92871 0.93836 0.88232 0.95682 0.81533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.56 37.16 0.36 -0.56 16 2 C 0.07 0.57 2.84 -26.73 -0.08 0.49 16 3 C -0.18 -1.18 9.21 37.15 0.34 -0.83 16 4 O -0.30 -3.23 9.80 -18.89 -0.19 -3.41 16 5 C 0.10 1.18 6.64 -38.84 -0.26 0.93 16 6 C -0.18 -2.16 8.37 -39.18 -0.33 -2.49 16 7 C -0.07 -1.07 9.62 -39.09 -0.38 -1.45 16 8 C 0.05 0.91 6.75 -83.02 -0.56 0.35 16 9 C 0.57 11.68 7.77 -12.29 -0.10 11.59 16 10 O -0.54 -12.54 15.98 5.33 0.09 -12.45 16 11 N -0.68 -13.26 4.90 -54.60 -0.27 -13.53 16 12 C 0.12 2.30 2.81 -67.81 -0.19 2.11 16 13 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 14 C -0.12 -1.95 5.59 -26.68 -0.15 -2.10 16 15 C -0.13 -2.21 5.21 -26.60 -0.14 -2.35 16 16 C 0.17 3.37 3.50 -67.60 -0.24 3.13 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.54 7.94 37.16 0.29 -2.25 16 19 N -0.58 -14.22 2.91 -164.78 -0.48 -14.69 16 20 C -0.24 -6.58 8.62 -15.06 -0.13 -6.71 16 21 H 0.07 1.82 6.18 -52.49 -0.32 1.50 16 22 C 0.00 0.11 4.97 -17.43 -0.09 0.02 16 23 N -0.90 -26.87 11.07 55.49 0.61 -26.25 16 24 Si 0.89 22.60 29.58 -169.99 -5.03 17.57 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 C 0.16 3.93 4.89 -3.71 -0.02 3.91 16 29 N -0.41 -6.75 9.53 -9.68 -0.09 -6.84 16 30 C 0.07 1.01 11.14 -17.38 -0.19 0.81 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.57 6.27 -51.93 -0.33 0.25 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.47 7.05 -51.93 -0.37 0.10 16 37 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.14 1.31 5.62 -52.49 -0.29 1.02 16 39 H 0.15 2.17 7.63 -52.49 -0.40 1.77 16 40 H 0.41 7.56 6.09 -40.82 -0.25 7.31 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.99 6.40 -51.93 -0.33 0.66 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.24 7.61 -51.93 -0.40 0.84 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 1.01 7.45 -51.93 -0.39 0.63 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 49 H 0.10 2.86 6.00 -51.93 -0.31 2.55 16 50 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.17 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 400.34 15.07 6.03 6.03 Total: -1.00 -32.49 400.34 -9.15 -41.64 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.99 Total: 7.33 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.84 Total: 4.61 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -0.23 Total: -61.31 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.10 Total: -15.87 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.03 Total: 17.57 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.49 -9.15 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.329 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds