Wall clock time and date at job start Wed Apr 1 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47057 * 2 1 4 4 O 1.42901 * 109.46580 * 119.99568 * 2 1 3 5 5 C 1.35726 * 116.99634 * 154.14085 * 4 2 1 6 6 C 1.39232 * 120.38168 * 5.20904 * 5 4 2 7 7 C 1.38321 * 118.44358 * 179.70797 * 6 5 4 8 8 C 1.39473 * 119.13424 * 0.51380 * 7 6 5 9 9 C 1.47926 * 119.65983 * 179.75448 * 8 7 6 10 10 O 1.21546 * 120.00181 * 359.72337 * 9 8 7 11 11 N 1.34774 * 119.99827 * 179.72978 * 9 8 7 12 12 C 1.46507 * 119.99606 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.52826 * 35.08277 * 12 11 9 14 14 C 1.53045 * 109.49518 * 155.15997 * 12 11 9 15 15 C 1.53046 * 109.53473 * 58.58469 * 14 12 11 16 16 C 1.53198 * 109.30968 * 61.36799 * 15 14 12 17 17 H 1.09000 * 109.58704 * 65.15217 * 16 15 14 18 18 C 1.52998 * 109.58293 * 185.57421 * 16 15 14 19 19 N 1.46917 * 108.77363 * 305.36000 * 16 15 14 20 20 C 1.36939 * 120.63083 * 233.63251 * 19 16 15 21 21 H 1.07999 * 119.99787 * 28.39790 * 20 19 16 22 22 C 1.38813 * 120.00087 * 208.40346 * 20 19 16 23 23 N 1.31614 * 120.00076 * 14.73252 * 22 20 19 24 24 Si 1.86800 * 119.99890 * 194.73619 * 22 20 19 25 25 H 1.48498 * 109.47170 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46889 * 119.99755 * 24 22 20 27 27 H 1.48493 * 109.47300 * 239.99568 * 24 22 20 28 28 C 1.46924 * 118.74272 * 53.61095 * 19 16 15 29 29 N 1.32799 * 120.68072 * 359.47450 * 8 7 6 30 30 C 1.31379 * 121.69539 * 0.27676 * 29 8 7 31 31 H 1.08995 * 109.47225 * 300.00059 * 1 2 3 32 32 H 1.08998 * 109.46808 * 60.00255 * 1 2 3 33 33 H 1.09000 * 109.47490 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.47114 * 239.99164 * 2 1 3 35 35 H 1.08996 * 109.47841 * 59.99609 * 3 2 1 36 36 H 1.09000 * 109.47197 * 179.97438 * 3 2 1 37 37 H 1.09008 * 109.47105 * 299.99523 * 3 2 1 38 38 H 1.08000 * 120.77911 * 0.02562 * 6 5 4 39 39 H 1.07996 * 120.43551 * 180.26588 * 7 6 5 40 40 H 0.96997 * 120.00594 * 359.97438 * 11 9 8 41 41 H 1.08994 * 109.45901 * 178.60432 * 14 12 11 42 42 H 1.09003 * 109.46269 * 298.56812 * 14 12 11 43 43 H 1.08994 * 109.50122 * 301.41454 * 15 14 12 44 44 H 1.09002 * 109.51909 * 181.32913 * 15 14 12 45 45 H 1.08999 * 109.47105 * 179.28748 * 18 16 15 46 46 H 1.09002 * 109.47151 * 299.28865 * 18 16 15 47 47 H 1.08999 * 109.47149 * 59.28762 * 18 16 15 48 48 H 0.97001 * 120.00390 * 179.97438 * 23 22 20 49 49 H 1.08992 * 109.58942 * 186.60214 * 28 19 16 50 50 H 1.09005 * 109.70009 * 66.24740 * 28 19 16 51 51 H 1.08000 * 119.59245 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 3.2376 -1.2395 1.0922 6 6 4.0268 -1.0615 -0.0410 7 6 5.2777 -1.6512 -0.0719 8 6 5.6988 -2.4081 1.0213 9 6 7.0320 -3.0485 0.9982 10 8 7.7523 -2.9178 0.0280 11 7 7.4481 -3.7768 2.0531 12 6 8.7683 -4.4115 2.0301 13 1 9.4713 -3.7708 1.4978 14 6 9.2574 -4.6253 3.4644 15 6 8.2542 -5.4980 4.2224 16 6 8.1526 -6.8645 3.5374 17 1 9.1059 -7.3865 3.6198 18 6 7.0521 -7.6920 4.2046 19 7 7.8241 -6.6597 2.1201 20 6 6.7474 -7.2899 1.5553 21 1 5.8944 -7.5514 2.1639 22 6 6.7524 -7.5926 0.2006 23 7 7.8781 -7.5465 -0.4799 24 14 5.1615 -8.0653 -0.6567 25 1 4.0456 -8.0419 0.3228 26 1 4.8814 -7.0984 -1.7485 27 1 5.2927 -9.4304 -1.2260 28 6 8.6723 -5.7656 1.3203 29 7 4.9174 -2.5553 2.0849 30 6 3.7263 -2.0044 2.1480 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.6767 1.9564 0.8899 36 1 3.1300 1.4425 0.0005 37 1 1.6767 1.9563 -0.8901 38 1 3.6728 -0.4725 -0.8741 39 1 5.9182 -1.5305 -0.9330 40 1 6.8734 -3.8809 2.8276 41 1 10.2285 -5.1199 3.4470 42 1 9.3500 -3.6610 3.9641 43 1 7.2768 -5.0157 4.2188 44 1 8.5909 -5.6306 5.2506 45 1 6.9728 -8.6589 3.7077 46 1 7.2977 -7.8427 5.2558 47 1 6.1019 -7.1639 4.1255 48 1 7.8817 -7.7584 -1.4264 49 1 8.2314 -5.6301 0.3328 50 1 9.6684 -6.1968 1.2196 51 1 3.1189 -2.1466 3.0296 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072127808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:20 Heat of formation + Delta-G solvation = -40.268586 kcal Electronic energy + Delta-G solvation = -31786.360098 eV Core-core repulsion = 27685.767141 eV Total energy + Delta-G solvation = -4100.592957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.00362 -40.89177 -39.64214 -38.79795 -35.80487 -34.53752 -34.34654 -33.44443 -32.42039 -31.73460 -31.01165 -28.21641 -27.87383 -26.83789 -25.70494 -24.74098 -23.86833 -22.85187 -22.10960 -21.63458 -20.33498 -19.63013 -18.97916 -18.27940 -17.86037 -17.14326 -16.74736 -16.52994 -16.20323 -16.04895 -15.73363 -15.62960 -15.44556 -15.12260 -14.98268 -14.79107 -14.56303 -14.34548 -14.06454 -13.97379 -13.67370 -13.49302 -13.35397 -13.13500 -13.00326 -12.88107 -12.84743 -12.62762 -12.53120 -12.40002 -12.10857 -12.05873 -12.01053 -11.76716 -11.56578 -11.32158 -11.18951 -11.03256 -10.96495 -10.67749 -10.51611 -9.98643 -9.50051 -8.56078 -7.80451 -5.24552 -0.36582 0.08547 1.37125 1.39923 1.48321 1.74682 1.93869 2.28949 2.49781 2.81387 3.18682 3.34750 3.47185 3.65237 3.68253 3.76875 3.91240 3.96777 3.99102 4.05207 4.11951 4.12737 4.20604 4.50901 4.61605 4.64842 4.68546 4.72016 4.75006 4.77357 4.83764 4.85152 4.87272 4.88314 4.97900 5.05586 5.10964 5.12141 5.20855 5.24772 5.27570 5.27810 5.34707 5.57298 5.64281 5.70103 5.75450 5.77478 6.12991 6.45934 6.52150 6.81482 7.20227 7.30728 7.94948 8.44758 9.24589 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011275 B = 0.003340 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.696458 B = 8381.237347 C = 9274.198603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 C -0.178 4.178 4 O -0.303 6.303 5 C 0.113 3.887 6 C -0.170 4.170 7 C -0.076 4.076 8 C 0.017 3.983 9 C 0.562 3.438 10 O -0.584 6.584 11 N -0.673 5.673 12 C 0.123 3.877 13 H 0.068 0.932 14 C -0.110 4.110 15 C -0.120 4.120 16 C 0.154 3.846 17 H 0.018 0.982 18 C -0.128 4.128 19 N -0.594 5.594 20 C -0.231 4.231 21 H 0.074 0.926 22 C -0.055 4.055 23 N -0.936 5.936 24 Si 0.946 3.054 25 H -0.264 1.264 26 H -0.304 1.304 27 H -0.291 1.291 28 C 0.170 3.830 29 N -0.429 5.429 30 C 0.069 3.931 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.176 0.824 39 H 0.146 0.854 40 H 0.411 0.589 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.036 0.964 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.242 0.758 49 H 0.051 0.949 50 H 0.001 0.999 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 18.377 6.848 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 C -0.235 4.235 4 O -0.215 6.215 5 C 0.063 3.937 6 C -0.195 4.195 7 C -0.097 4.097 8 C -0.120 4.120 9 C 0.348 3.652 10 O -0.465 6.465 11 N -0.322 5.322 12 C 0.017 3.983 13 H 0.086 0.914 14 C -0.148 4.148 15 C -0.159 4.159 16 C 0.049 3.951 17 H 0.036 0.964 18 C -0.185 4.185 19 N -0.318 5.318 20 C -0.362 4.362 21 H 0.091 0.909 22 C -0.250 4.250 23 N -0.583 5.583 24 Si 0.776 3.224 25 H -0.188 1.188 26 H -0.232 1.232 27 H -0.218 1.218 28 C 0.043 3.957 29 N -0.140 5.140 30 C -0.094 4.094 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.193 0.807 39 H 0.164 0.836 40 H 0.249 0.751 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.095 0.905 47 H 0.067 0.933 48 H 0.051 0.949 49 H 0.069 0.931 50 H 0.018 0.982 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.517 17.896 6.902 22.373 hybrid contribution -0.781 -0.250 -1.834 2.009 sum -12.299 17.646 5.068 22.098 Atomic orbital electron populations 1.21895 0.90696 1.03397 1.04373 1.22916 0.96871 0.93271 0.86419 1.22382 1.01736 0.94921 1.04482 1.86131 1.28101 1.66822 1.40402 1.20408 0.85983 0.92421 0.94854 1.21939 0.94058 1.03828 0.99718 1.22011 0.96348 0.93263 0.98115 1.20907 0.95416 1.02173 0.93482 1.18148 0.85471 0.78782 0.82789 1.90717 1.56791 1.64471 1.34472 1.45638 1.18836 1.48639 1.19081 1.21619 0.83545 0.94443 0.98702 0.91351 1.21664 0.99511 1.00930 0.92656 1.21966 0.98930 0.95676 0.99361 1.20772 0.95941 0.94501 0.83895 0.96418 1.21719 0.98235 0.99096 0.99477 1.44246 1.31164 1.50283 1.06116 1.19439 0.94604 1.29946 0.92202 0.90891 1.25664 0.98451 1.01548 0.99319 1.70152 1.25652 1.55010 1.07533 0.85493 0.81466 0.76780 0.78639 1.18786 1.23195 1.21808 1.20885 0.92451 0.87246 0.95086 1.67527 1.04587 1.17217 1.24713 1.22662 0.92148 0.95364 0.99247 0.91118 0.88205 0.92111 0.90109 0.91228 0.92542 0.88652 0.80707 0.83595 0.75109 0.90400 0.89860 0.92389 0.89024 0.94510 0.90502 0.93344 0.94875 0.93056 0.98155 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.56 71.98 0.69 -0.67 16 2 C 0.06 0.76 2.84 30.59 0.09 0.85 16 3 C -0.18 -1.76 9.21 71.98 0.66 -1.10 16 4 O -0.30 -5.64 9.80 -90.49 -0.89 -6.52 16 5 C 0.11 2.54 6.64 22.75 0.15 2.69 16 6 C -0.17 -3.83 8.37 22.53 0.19 -3.64 16 7 C -0.08 -2.30 9.62 22.59 0.22 -2.09 16 8 C 0.02 0.59 6.75 41.86 0.28 0.87 16 9 C 0.56 23.95 7.77 86.81 0.67 24.62 16 10 O -0.58 -28.53 15.98 -3.86 -0.06 -28.59 16 11 N -0.67 -26.73 4.90 -444.95 -2.18 -28.92 16 12 C 0.12 4.99 2.81 45.07 0.13 5.12 16 13 H 0.07 2.86 7.58 -2.39 -0.02 2.85 16 14 C -0.11 -3.40 5.59 30.62 0.17 -3.23 16 15 C -0.12 -3.68 5.21 30.68 0.16 -3.52 16 16 C 0.15 6.07 3.50 44.98 0.16 6.22 16 17 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 18 C -0.13 -4.53 7.94 71.98 0.57 -3.96 16 19 N -0.59 -29.53 2.91 -675.25 -1.97 -31.50 16 20 C -0.23 -12.76 8.62 84.03 0.72 -12.03 16 21 H 0.07 3.90 6.18 -2.91 -0.02 3.89 16 22 C -0.06 -3.25 4.97 84.86 0.42 -2.82 16 23 N -0.94 -58.81 11.07 21.65 0.24 -58.57 16 24 Si 0.95 47.81 29.58 68.60 2.03 49.84 16 25 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 26 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.29 -14.55 7.11 99.48 0.71 -13.85 16 28 C 0.17 8.73 4.89 86.36 0.42 9.15 16 29 N -0.43 -13.68 9.53 -184.52 -1.76 -15.44 16 30 C 0.07 1.74 11.14 85.00 0.95 2.68 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.96 6.27 -2.39 -0.01 0.95 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.66 7.05 -2.39 -0.02 0.65 16 37 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.18 2.72 5.62 -2.91 -0.02 2.70 16 39 H 0.15 4.41 7.63 -2.91 -0.02 4.38 16 40 H 0.41 15.15 6.09 -92.71 -0.56 14.58 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 1.81 6.40 -2.39 -0.02 1.79 16 44 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.04 1.45 7.61 -2.39 -0.02 1.43 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16 48 H 0.24 15.01 8.31 -92.71 -0.77 14.23 16 49 H 0.05 3.14 6.00 -2.39 -0.01 3.13 16 50 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 51 H 0.19 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -75.41 400.34 2.44 -72.97 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 0.38 Total: 27.59 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.65 Total: 19.14 kcal Atomic # 7 Polarization: -128.76 SS G_CDS: -5.67 Total: -134.43 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.95 Total: -35.11 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.84 kcal Total: -75.41 2.44 -72.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.701 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds