Wall clock time and date at job start Wed Apr 1 2020 05:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46600 * 2 1 4 4 O 1.42900 * 109.47283 * 119.99414 * 2 1 3 5 5 C 1.35721 * 116.99799 * 84.66881 * 4 2 1 6 6 C 1.39231 * 120.38023 * 354.81744 * 5 4 2 7 7 C 1.38322 * 118.44373 * 179.75171 * 6 5 4 8 8 C 1.39473 * 119.13209 * 0.55107 * 7 6 5 9 9 C 1.47929 * 119.65745 * 179.70828 * 8 7 6 10 10 O 1.21548 * 120.00208 * 359.73350 * 9 8 7 11 11 N 1.34773 * 119.99896 * 179.72624 * 9 8 7 12 12 C 1.46500 * 120.00169 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.49338 * 324.94107 * 12 11 9 14 14 C 1.53035 * 109.52603 * 204.85790 * 12 11 9 15 15 C 1.53043 * 109.53977 * 301.39742 * 14 12 11 16 16 C 1.53188 * 109.31041 * 298.63730 * 15 14 12 17 17 H 1.08997 * 109.70145 * 294.76978 * 16 15 14 18 18 C 1.53006 * 109.58228 * 174.42163 * 16 15 14 19 19 N 1.46918 * 108.78004 * 54.63170 * 16 15 14 20 20 C 1.36946 * 120.63315 * 126.40760 * 19 16 15 21 21 H 1.07996 * 119.99870 * 325.47691 * 20 19 16 22 22 C 1.38813 * 119.99901 * 145.47090 * 20 19 16 23 23 N 1.31616 * 119.99844 * 343.79547 * 22 20 19 24 24 Si 1.86794 * 119.99685 * 163.80053 * 22 20 19 25 25 H 1.48499 * 109.47558 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47011 * 120.00208 * 24 22 20 27 27 H 1.48504 * 109.47214 * 239.99884 * 24 22 20 28 28 C 1.46925 * 118.74143 * 306.39253 * 19 16 15 29 29 N 1.32789 * 120.68092 * 359.43478 * 8 7 6 30 30 C 1.31380 * 121.70256 * 0.27678 * 29 8 7 31 31 H 1.08995 * 109.47367 * 60.00628 * 1 2 3 32 32 H 1.09004 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47250 * 299.99861 * 1 2 3 34 34 H 1.08995 * 109.47250 * 240.00139 * 2 1 3 35 35 H 1.09008 * 109.46846 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46848 * 299.99396 * 3 2 1 37 37 H 1.08995 * 109.47206 * 60.00112 * 3 2 1 38 38 H 1.07997 * 120.78011 * 0.04741 * 6 5 4 39 39 H 1.08000 * 120.43738 * 180.26409 * 7 6 5 40 40 H 0.96998 * 120.00132 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.46028 * 61.41656 * 14 12 11 42 42 H 1.09001 * 109.45962 * 181.37780 * 14 12 11 43 43 H 1.09000 * 109.49826 * 178.68240 * 15 14 12 44 44 H 1.09002 * 109.49466 * 58.58792 * 15 14 12 45 45 H 1.08996 * 109.47464 * 300.70540 * 18 16 15 46 46 H 1.08993 * 109.47293 * 60.71454 * 18 16 15 47 47 H 1.09007 * 109.46701 * 180.71145 * 18 16 15 48 48 H 0.97002 * 119.99890 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.58814 * 173.38907 * 28 19 16 50 50 H 1.08996 * 109.58369 * 293.82357 * 28 19 16 51 51 H 1.07994 * 119.60251 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1058 -2.0254 1.1004 6 6 1.6527 -2.7104 -0.0238 7 6 1.7784 -4.0877 -0.0513 8 6 2.3404 -4.7402 1.0458 9 6 2.4745 -6.2133 1.0316 10 8 2.0914 -6.8492 0.0691 11 7 3.0216 -6.8504 2.0857 12 6 3.1539 -8.3093 2.0718 13 1 2.3024 -8.7468 1.5506 14 6 3.1969 -8.8327 3.5093 15 6 4.3728 -8.1938 4.2517 16 6 5.6816 -8.5816 3.5566 17 1 5.8400 -9.6564 3.6447 18 6 6.8485 -7.8362 4.2077 19 7 5.5912 -8.2117 2.1376 20 6 6.5534 -7.4283 1.5580 21 1 7.0338 -6.6498 2.1320 22 6 6.9113 -7.6351 0.2329 23 7 6.5796 -8.7564 -0.3711 24 14 7.8638 -6.3218 -0.6930 25 1 8.1121 -5.1650 0.2044 26 1 9.1615 -6.8809 -1.1497 27 1 7.0755 -5.8757 -1.8699 28 6 4.4490 -8.6985 1.3520 29 7 2.7613 -4.0522 2.1008 30 6 2.6618 -2.7434 2.1560 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.2177 -2.1786 -0.8570 39 1 1.4415 -4.6508 -0.9090 40 1 3.3271 -6.3430 2.8539 41 1 2.2660 -8.5784 4.0163 42 1 3.3199 -9.9157 3.4979 43 1 4.3888 -8.5491 5.2820 44 1 4.2631 -7.1094 4.2420 45 1 6.6858 -6.7618 4.1231 46 1 6.9139 -8.1120 5.2601 47 1 7.7771 -8.1038 3.7035 48 1 6.8293 -8.9008 -1.2972 49 1 4.4670 -8.2445 0.3612 50 1 4.5044 -9.7832 1.2604 51 1 3.0147 -2.2180 3.0310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072127809.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:24 Heat of formation + Delta-G solvation = -22.200153 kcal Electronic energy + Delta-G solvation = -31734.830390 eV Core-core repulsion = 27635.020939 eV Total energy + Delta-G solvation = -4099.809451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.94403 -39.53278 -38.42940 -37.26281 -34.08246 -33.68982 -32.68539 -32.30253 -31.00120 -29.98951 -29.70128 -27.73203 -26.18986 -25.00569 -24.54130 -23.62342 -22.13156 -21.86484 -20.75800 -20.21562 -18.66328 -18.64096 -17.78431 -16.89778 -16.18846 -15.88557 -15.41586 -15.22532 -14.83715 -14.74268 -14.51635 -14.14973 -13.94525 -13.90943 -13.56868 -13.46820 -13.26175 -13.05660 -12.83904 -12.69019 -12.63479 -12.52813 -12.36702 -12.20432 -11.81448 -11.36157 -11.18204 -11.13717 -11.06537 -10.92648 -10.78414 -10.69355 -10.31906 -10.24393 -9.94185 -9.90402 -9.90034 -9.50270 -9.39947 -9.28130 -8.56003 -8.38460 -8.22813 -6.45725 -5.69566 -3.16786 0.79321 1.12707 2.75848 3.09498 3.40996 3.49176 3.50447 3.68020 4.08909 4.29465 4.34374 4.44246 4.49151 4.55936 4.63151 4.75033 5.03864 5.06591 5.11152 5.27568 5.32028 5.35517 5.39231 5.42839 5.51654 5.59387 5.65044 5.67281 5.70100 5.71799 5.87486 5.94641 6.09680 6.20361 6.21484 6.26304 6.41655 6.45031 6.53284 6.59701 6.70963 6.76523 6.96975 7.01463 7.15759 7.23035 7.42570 7.65772 7.76200 7.92966 8.23309 8.58727 8.81869 9.30494 9.93976 10.53875 11.38232 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.003306 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.550351 B = 8466.482826 C = 9378.467706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.073 3.927 3 C -0.148 4.148 4 O -0.301 6.301 5 C 0.097 3.903 6 C -0.178 4.178 7 C -0.071 4.071 8 C 0.051 3.949 9 C 0.571 3.429 10 O -0.546 6.546 11 N -0.677 5.677 12 C 0.116 3.884 13 H 0.076 0.924 14 C -0.117 4.117 15 C -0.132 4.132 16 C 0.166 3.834 17 H 0.024 0.976 18 C -0.134 4.134 19 N -0.580 5.580 20 C -0.248 4.248 21 H 0.064 0.936 22 C 0.011 3.989 23 N -0.896 5.896 24 Si 0.891 3.109 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.167 3.833 29 N -0.415 5.415 30 C 0.075 3.925 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.144 0.856 39 H 0.150 0.850 40 H 0.406 0.594 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.036 0.964 47 H 0.060 0.940 48 H 0.252 0.748 49 H 0.084 0.916 50 H 0.028 0.972 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.459 15.375 4.466 20.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.017 3.983 3 C -0.206 4.206 4 O -0.213 6.213 5 C 0.048 3.952 6 C -0.205 4.205 7 C -0.092 4.092 8 C -0.087 4.087 9 C 0.355 3.645 10 O -0.424 6.424 11 N -0.327 5.327 12 C 0.010 3.990 13 H 0.094 0.906 14 C -0.155 4.155 15 C -0.171 4.171 16 C 0.059 3.941 17 H 0.042 0.958 18 C -0.192 4.192 19 N -0.303 5.303 20 C -0.378 4.378 21 H 0.082 0.918 22 C -0.188 4.188 23 N -0.539 5.539 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.040 3.960 29 N -0.126 5.126 30 C -0.087 4.087 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.243 0.757 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.046 0.954 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.256 14.487 4.471 19.496 hybrid contribution 0.248 1.367 -1.280 1.890 sum -12.008 15.855 3.191 20.143 Atomic orbital electron populations 1.22400 0.94808 1.03289 1.03378 1.22538 0.94512 0.93940 0.87336 1.21856 1.02375 0.93163 1.03161 1.86101 1.80603 1.15601 1.39034 1.20398 0.95597 0.83654 0.95552 1.21698 1.04836 0.95017 0.98908 1.21962 0.94825 0.93625 0.98791 1.21249 1.00670 0.95114 0.91642 1.17588 0.78508 0.85123 0.83312 1.90757 1.51340 1.66531 1.33728 1.45701 1.59349 1.08165 1.19478 1.21840 1.01244 0.79158 0.96765 0.90571 1.21675 0.98016 1.00682 0.95176 1.22078 0.96835 1.00209 0.97989 1.20469 0.91665 0.95817 0.86114 0.95808 1.21777 0.99497 1.00428 0.97477 1.43971 1.22895 1.59103 1.04372 1.19024 1.14980 1.08963 0.94862 0.91835 1.25139 0.98620 0.95893 0.99193 1.70017 1.49530 1.22627 1.11727 0.86409 0.79428 0.81934 0.80144 1.20282 1.21730 1.21719 1.21074 0.82779 0.96619 0.95557 1.67623 1.12420 1.07440 1.25139 1.22223 0.99739 0.88836 0.97929 0.90784 0.91740 0.91229 0.90659 0.91421 0.90387 0.91312 0.83826 0.83201 0.75730 0.92986 0.91064 0.92880 0.92399 0.92965 0.94542 0.92059 0.93823 0.89791 0.95401 0.81518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 9.18 37.16 0.34 -0.82 16 2 C 0.07 0.56 2.85 -26.73 -0.08 0.49 16 3 C -0.15 -0.90 9.56 37.16 0.36 -0.54 16 4 O -0.30 -3.19 9.80 -18.87 -0.18 -3.37 16 5 C 0.10 1.18 6.63 -38.84 -0.26 0.92 16 6 C -0.18 -2.13 8.31 -39.18 -0.33 -2.46 16 7 C -0.07 -1.05 9.62 -39.09 -0.38 -1.43 16 8 C 0.05 0.89 6.75 -83.02 -0.56 0.33 16 9 C 0.57 11.54 7.77 -12.29 -0.10 11.44 16 10 O -0.55 -12.40 15.98 5.32 0.09 -12.32 16 11 N -0.68 -13.12 4.91 -54.61 -0.27 -13.38 16 12 C 0.12 2.28 2.81 -67.81 -0.19 2.09 16 13 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 14 C -0.12 -1.93 5.59 -26.69 -0.15 -2.08 16 15 C -0.13 -2.21 5.21 -26.61 -0.14 -2.35 16 16 C 0.17 3.38 3.50 -67.60 -0.24 3.15 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.13 -2.54 7.99 37.16 0.30 -2.25 16 19 N -0.58 -14.16 2.87 -164.78 -0.47 -14.63 16 20 C -0.25 -6.74 8.40 -15.05 -0.13 -6.87 16 21 H 0.06 1.72 6.41 -52.49 -0.34 1.38 16 22 C 0.01 0.32 4.89 -17.43 -0.09 0.23 16 23 N -0.90 -26.74 11.65 55.49 0.65 -26.09 16 24 Si 0.89 22.53 29.58 -169.99 -5.03 17.50 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 C 0.17 4.04 4.87 -3.71 -0.02 4.02 16 29 N -0.41 -6.67 9.52 -9.68 -0.09 -6.76 16 30 C 0.07 1.00 11.14 -17.37 -0.19 0.80 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 6.91 -51.93 -0.36 0.10 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.56 6.34 -51.93 -0.33 0.23 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.14 1.29 5.57 -52.49 -0.29 1.00 16 39 H 0.15 2.14 7.63 -52.49 -0.40 1.74 16 40 H 0.41 7.49 6.10 -40.82 -0.25 7.24 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.99 6.41 -51.93 -0.33 0.65 16 45 H 0.05 1.00 7.42 -51.93 -0.39 0.62 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.08 2.39 6.54 -51.93 -0.34 2.05 16 50 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 401.20 15.07 6.05 6.05 Total: -1.00 -32.53 401.20 -9.13 -41.66 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.02 Total: 6.67 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.84 Total: 4.69 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.19 Total: -60.87 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.10 Total: -15.69 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.53 -9.13 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127809.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.461 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds