Wall clock time and date at job start Wed Apr 1 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46600 * 2 1 4 4 O 1.42900 * 109.47283 * 119.99414 * 2 1 3 5 5 C 1.35721 * 116.99799 * 84.66881 * 4 2 1 6 6 C 1.39231 * 120.38023 * 354.81744 * 5 4 2 7 7 C 1.38322 * 118.44373 * 179.75171 * 6 5 4 8 8 C 1.39473 * 119.13209 * 0.55107 * 7 6 5 9 9 C 1.47929 * 119.65745 * 179.70828 * 8 7 6 10 10 O 1.21548 * 120.00208 * 359.73350 * 9 8 7 11 11 N 1.34773 * 119.99896 * 179.72624 * 9 8 7 12 12 C 1.46500 * 120.00169 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.49338 * 324.94107 * 12 11 9 14 14 C 1.53035 * 109.52603 * 204.85790 * 12 11 9 15 15 C 1.53043 * 109.53977 * 301.39742 * 14 12 11 16 16 C 1.53188 * 109.31041 * 298.63730 * 15 14 12 17 17 H 1.08997 * 109.70145 * 294.76978 * 16 15 14 18 18 C 1.53006 * 109.58228 * 174.42163 * 16 15 14 19 19 N 1.46918 * 108.78004 * 54.63170 * 16 15 14 20 20 C 1.36946 * 120.63315 * 126.40760 * 19 16 15 21 21 H 1.07996 * 119.99870 * 325.47691 * 20 19 16 22 22 C 1.38813 * 119.99901 * 145.47090 * 20 19 16 23 23 N 1.31616 * 119.99844 * 343.79547 * 22 20 19 24 24 Si 1.86794 * 119.99685 * 163.80053 * 22 20 19 25 25 H 1.48499 * 109.47558 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47011 * 120.00208 * 24 22 20 27 27 H 1.48504 * 109.47214 * 239.99884 * 24 22 20 28 28 C 1.46925 * 118.74143 * 306.39253 * 19 16 15 29 29 N 1.32789 * 120.68092 * 359.43478 * 8 7 6 30 30 C 1.31380 * 121.70256 * 0.27678 * 29 8 7 31 31 H 1.08995 * 109.47367 * 60.00628 * 1 2 3 32 32 H 1.09004 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47250 * 299.99861 * 1 2 3 34 34 H 1.08995 * 109.47250 * 240.00139 * 2 1 3 35 35 H 1.09008 * 109.46846 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46848 * 299.99396 * 3 2 1 37 37 H 1.08995 * 109.47206 * 60.00112 * 3 2 1 38 38 H 1.07997 * 120.78011 * 0.04741 * 6 5 4 39 39 H 1.08000 * 120.43738 * 180.26409 * 7 6 5 40 40 H 0.96998 * 120.00132 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.46028 * 61.41656 * 14 12 11 42 42 H 1.09001 * 109.45962 * 181.37780 * 14 12 11 43 43 H 1.09000 * 109.49826 * 178.68240 * 15 14 12 44 44 H 1.09002 * 109.49466 * 58.58792 * 15 14 12 45 45 H 1.08996 * 109.47464 * 300.70540 * 18 16 15 46 46 H 1.08993 * 109.47293 * 60.71454 * 18 16 15 47 47 H 1.09007 * 109.46701 * 180.71145 * 18 16 15 48 48 H 0.97002 * 119.99890 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.58814 * 173.38907 * 28 19 16 50 50 H 1.08996 * 109.58369 * 293.82357 * 28 19 16 51 51 H 1.07994 * 119.60251 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.1058 -2.0254 1.1004 6 6 1.6527 -2.7104 -0.0238 7 6 1.7784 -4.0877 -0.0513 8 6 2.3404 -4.7402 1.0458 9 6 2.4745 -6.2133 1.0316 10 8 2.0914 -6.8492 0.0691 11 7 3.0216 -6.8504 2.0857 12 6 3.1539 -8.3093 2.0718 13 1 2.3024 -8.7468 1.5506 14 6 3.1969 -8.8327 3.5093 15 6 4.3728 -8.1938 4.2517 16 6 5.6816 -8.5816 3.5566 17 1 5.8400 -9.6564 3.6447 18 6 6.8485 -7.8362 4.2077 19 7 5.5912 -8.2117 2.1376 20 6 6.5534 -7.4283 1.5580 21 1 7.0338 -6.6498 2.1320 22 6 6.9113 -7.6351 0.2329 23 7 6.5796 -8.7564 -0.3711 24 14 7.8638 -6.3218 -0.6930 25 1 8.1121 -5.1650 0.2044 26 1 9.1615 -6.8809 -1.1497 27 1 7.0755 -5.8757 -1.8699 28 6 4.4490 -8.6985 1.3520 29 7 2.7613 -4.0522 2.1008 30 6 2.6618 -2.7434 2.1560 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8901 37 1 1.6766 1.9564 0.8899 38 1 1.2177 -2.1786 -0.8570 39 1 1.4415 -4.6508 -0.9090 40 1 3.3271 -6.3430 2.8539 41 1 2.2660 -8.5784 4.0163 42 1 3.3199 -9.9157 3.4979 43 1 4.3888 -8.5491 5.2820 44 1 4.2631 -7.1094 4.2420 45 1 6.6858 -6.7618 4.1231 46 1 6.9139 -8.1120 5.2601 47 1 7.7771 -8.1038 3.7035 48 1 6.8293 -8.9008 -1.2972 49 1 4.4670 -8.2445 0.3612 50 1 4.5044 -9.7832 1.2604 51 1 3.0147 -2.2180 3.0310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072127809.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:23 Heat of formation + Delta-G solvation = -43.208378 kcal Electronic energy + Delta-G solvation = -31735.741375 eV Core-core repulsion = 27635.020939 eV Total energy + Delta-G solvation = -4100.720436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.00689 -40.89906 -39.63973 -38.79755 -35.80508 -34.51041 -34.34037 -33.44286 -32.41524 -31.80864 -31.01917 -28.21869 -27.87046 -26.81465 -25.70341 -24.73565 -23.90133 -22.85403 -22.11169 -21.64203 -20.34945 -19.62387 -18.98464 -18.27617 -17.85568 -17.12327 -16.75245 -16.53593 -16.22308 -16.06888 -15.74618 -15.62906 -15.46534 -15.11193 -14.98972 -14.79248 -14.57317 -14.35241 -14.05442 -13.97863 -13.68998 -13.49277 -13.36676 -13.13127 -12.98603 -12.88346 -12.84273 -12.66549 -12.54682 -12.43962 -12.14682 -12.06181 -12.01048 -11.77016 -11.56505 -11.32826 -11.19179 -11.04270 -10.96210 -10.67405 -10.53883 -9.99336 -9.50057 -8.50488 -7.82811 -5.32060 -0.36709 0.08668 1.36226 1.39287 1.47764 1.73853 1.93954 2.27974 2.48421 2.81022 3.18459 3.31867 3.47352 3.64942 3.68293 3.77232 3.90776 3.96577 3.99130 4.04212 4.11819 4.12679 4.20177 4.49555 4.61663 4.64965 4.68533 4.72060 4.75131 4.77451 4.83815 4.85364 4.87421 4.88354 4.96734 5.05524 5.10134 5.12497 5.20979 5.24763 5.27676 5.28158 5.33767 5.56999 5.59915 5.67700 5.71348 5.75710 6.13089 6.47038 6.51554 6.81030 7.19669 7.29464 7.92165 8.46307 9.21713 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.003306 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.550351 B = 8466.482826 C = 9378.467706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.061 3.939 3 C -0.146 4.146 4 O -0.303 6.303 5 C 0.113 3.887 6 C -0.170 4.170 7 C -0.076 4.076 8 C 0.016 3.984 9 C 0.562 3.438 10 O -0.584 6.584 11 N -0.673 5.673 12 C 0.124 3.876 13 H 0.070 0.930 14 C -0.109 4.109 15 C -0.120 4.120 16 C 0.155 3.845 17 H 0.016 0.984 18 C -0.126 4.126 19 N -0.593 5.593 20 C -0.237 4.237 21 H 0.067 0.933 22 C -0.047 4.047 23 N -0.932 5.932 24 Si 0.944 3.056 25 H -0.264 1.264 26 H -0.289 1.289 27 H -0.302 1.302 28 C 0.178 3.822 29 N -0.429 5.429 30 C 0.069 3.931 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.176 0.824 39 H 0.147 0.853 40 H 0.411 0.589 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.075 0.925 47 H 0.034 0.966 48 H 0.244 0.756 49 H 0.033 0.967 50 H 0.003 0.997 51 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.426 18.303 6.526 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 C -0.203 4.203 4 O -0.215 6.215 5 C 0.064 3.936 6 C -0.195 4.195 7 C -0.097 4.097 8 C -0.120 4.120 9 C 0.349 3.651 10 O -0.465 6.465 11 N -0.322 5.322 12 C 0.018 3.982 13 H 0.088 0.912 14 C -0.147 4.147 15 C -0.159 4.159 16 C 0.049 3.951 17 H 0.034 0.966 18 C -0.184 4.184 19 N -0.316 5.316 20 C -0.368 4.368 21 H 0.085 0.915 22 C -0.243 4.243 23 N -0.579 5.579 24 Si 0.774 3.226 25 H -0.188 1.188 26 H -0.216 1.216 27 H -0.230 1.230 28 C 0.051 3.949 29 N -0.140 5.140 30 C -0.094 4.094 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.193 0.807 39 H 0.164 0.836 40 H 0.249 0.751 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.021 0.979 51 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.221 17.441 6.584 22.854 hybrid contribution 0.518 0.611 -1.880 2.043 sum -12.703 18.052 4.704 22.569 Atomic orbital electron populations 1.22397 0.93605 1.03126 1.04489 1.22911 0.95544 0.94590 0.86391 1.21892 1.01982 0.92092 1.04368 1.86129 1.80215 1.14440 1.40686 1.20409 0.93830 0.84534 0.94871 1.21944 1.04033 0.93735 0.99817 1.22016 0.94729 0.94936 0.98028 1.20895 1.03961 0.93578 0.93560 1.18152 0.77648 0.86656 0.82690 1.90717 1.52970 1.67831 1.34972 1.45645 1.59152 1.07864 1.19571 1.21606 0.98066 0.79817 0.98756 0.91179 1.21658 0.99589 1.00916 0.92558 1.21960 0.94212 1.00330 0.99397 1.20772 0.94682 0.95632 0.83975 0.96614 1.21697 0.97411 0.99847 0.99403 1.44174 1.22446 1.58939 1.06077 1.19289 1.14078 1.08602 0.94786 0.91550 1.25799 1.00512 0.97548 1.00415 1.70161 1.51783 1.24507 1.11413 0.85542 0.78062 0.80296 0.78728 1.18835 1.21581 1.22994 1.20753 0.85470 0.94613 0.94102 1.67520 1.12875 1.08763 1.24890 1.22657 0.99492 0.88102 0.99170 0.88652 0.92510 0.91240 0.90116 0.92077 0.88205 0.91126 0.80713 0.83554 0.75060 0.89735 0.90378 0.89039 0.92335 0.93380 0.90592 0.94665 0.94718 0.94808 0.97864 0.79030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 9.18 71.98 0.66 -1.08 16 2 C 0.06 0.75 2.85 30.60 0.09 0.84 16 3 C -0.15 -1.32 9.56 71.98 0.69 -0.63 16 4 O -0.30 -5.56 9.80 -90.43 -0.89 -6.45 16 5 C 0.11 2.50 6.63 22.75 0.15 2.65 16 6 C -0.17 -3.75 8.31 22.53 0.19 -3.56 16 7 C -0.08 -2.25 9.62 22.59 0.22 -2.04 16 8 C 0.02 0.58 6.75 41.87 0.28 0.86 16 9 C 0.56 23.61 7.77 86.81 0.67 24.29 16 10 O -0.58 -28.12 15.98 -3.87 -0.06 -28.18 16 11 N -0.67 -26.41 4.91 -444.96 -2.18 -28.59 16 12 C 0.12 4.96 2.81 45.07 0.13 5.09 16 13 H 0.07 2.89 7.58 -2.39 -0.02 2.87 16 14 C -0.11 -3.36 5.59 30.62 0.17 -3.19 16 15 C -0.12 -3.67 5.21 30.67 0.16 -3.51 16 16 C 0.15 6.14 3.50 44.98 0.16 6.29 16 17 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 18 C -0.13 -4.55 7.99 71.98 0.58 -3.97 16 19 N -0.59 -29.50 2.87 -675.24 -1.94 -31.44 16 20 C -0.24 -13.11 8.40 84.03 0.71 -12.41 16 21 H 0.07 3.60 6.41 -2.91 -0.02 3.58 16 22 C -0.05 -2.77 4.89 84.86 0.41 -2.35 16 23 N -0.93 -58.57 11.65 21.65 0.25 -58.32 16 24 Si 0.94 47.69 29.58 68.60 2.03 49.72 16 25 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 27 H -0.30 -15.71 7.11 99.48 0.71 -15.00 16 28 C 0.18 9.05 4.87 86.36 0.42 9.47 16 29 N -0.43 -13.51 9.52 -184.53 -1.76 -15.26 16 30 C 0.07 1.71 11.14 85.00 0.95 2.66 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.65 6.91 -2.39 -0.02 0.64 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.08 0.93 6.34 -2.39 -0.02 0.92 16 35 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.18 2.65 5.57 -2.91 -0.02 2.64 16 39 H 0.15 4.33 7.63 -2.91 -0.02 4.31 16 40 H 0.41 14.98 6.10 -92.71 -0.57 14.42 16 41 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.06 1.82 6.41 -2.39 -0.02 1.80 16 45 H 0.05 1.75 7.42 -2.39 -0.02 1.74 16 46 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.03 1.42 7.67 -2.38 -0.02 1.41 16 48 H 0.24 15.04 8.31 -92.71 -0.77 14.26 16 49 H 0.03 2.05 6.54 -2.39 -0.02 2.03 16 50 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 51 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -75.48 401.20 2.45 -73.03 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.37 Total: 26.08 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 6.63 Total: 19.41 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -5.63 Total: -133.62 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.95 Total: -34.63 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -75.48 2.45 -73.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127809.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.820 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds