Wall clock time and date at job start Wed Apr 1 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 O 1.42895 * 109.47092 * 119.99759 * 2 1 3 5 5 C 1.35429 * 116.99771 * 90.00094 * 4 2 1 6 6 N 1.32238 * 119.79990 * 359.97438 * 5 4 2 7 7 C 1.31884 * 121.80127 * 180.02562 * 6 5 4 8 8 C 1.38355 * 121.18769 * 0.02562 * 7 6 5 9 9 C 1.38346 * 119.45431 * 359.73752 * 8 7 6 10 10 C 1.39981 * 118.34953 * 0.50171 * 9 8 7 11 11 C 1.47523 * 120.59853 * 179.77840 * 10 9 8 12 12 O 1.21591 * 120.00409 * 179.71962 * 11 10 9 13 13 N 1.34780 * 120.00011 * 359.72665 * 11 10 9 14 14 C 1.46500 * 120.00236 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.52197 * 34.91066 * 14 13 11 16 16 C 1.53036 * 109.49913 * 154.99532 * 14 13 11 17 17 C 1.53041 * 109.53965 * 181.31441 * 16 14 13 18 18 C 1.53191 * 109.31254 * 298.63797 * 17 16 14 19 19 H 1.09002 * 109.58561 * 294.84700 * 18 17 16 20 20 C 1.53000 * 109.58976 * 174.56464 * 18 17 16 21 21 N 1.46926 * 108.89669 * 54.70361 * 18 17 16 22 22 C 1.36935 * 120.63603 * 126.32520 * 21 18 17 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 18 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 18 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 C 1.47210 * 118.55427 * 306.46329 * 21 18 17 31 31 H 1.09006 * 109.46778 * 299.99907 * 1 2 3 32 32 H 1.08990 * 109.47402 * 59.99618 * 1 2 3 33 33 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47060 * 240.00115 * 2 1 3 35 35 H 1.08998 * 109.47533 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.47283 * 300.00353 * 3 2 1 37 37 H 1.09006 * 109.47271 * 60.00394 * 3 2 1 38 38 H 1.08000 * 119.40542 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.27489 * 180.02562 * 8 7 6 40 40 H 1.07998 * 120.82440 * 180.25971 * 9 8 7 41 41 H 0.96998 * 119.99300 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.46070 * 61.29552 * 16 14 13 43 43 H 1.08998 * 109.45994 * 301.33392 * 16 14 13 44 44 H 1.08996 * 109.49924 * 178.68306 * 17 16 14 45 45 H 1.09001 * 109.49378 * 58.58310 * 17 16 14 46 46 H 1.08993 * 109.47152 * 60.27580 * 20 18 17 47 47 H 1.08996 * 109.47418 * 180.28266 * 20 18 17 48 48 H 1.09007 * 109.46915 * 300.28242 * 20 18 17 49 49 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.55879 * 293.69878 * 30 21 18 51 51 H 1.08999 * 109.65160 * 173.39287 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2113 -2.0084 1.0654 6 7 1.9695 -2.6254 -0.0789 7 6 2.1547 -3.9234 -0.2213 8 6 2.6127 -4.7011 0.8273 9 6 2.8866 -4.1066 2.0461 10 6 2.6775 -2.7285 2.1754 11 6 2.9487 -2.0446 3.4541 12 8 2.7681 -0.8462 3.5529 13 7 3.3969 -2.7480 4.5128 14 6 3.6657 -2.0689 5.7828 15 1 2.9439 -1.2647 5.9257 16 6 3.5479 -3.0714 6.9330 17 6 3.7963 -2.3561 8.2630 18 6 5.2146 -1.7770 8.2695 19 1 5.9410 -2.5892 8.2412 20 6 5.4235 -0.9461 9.5372 21 7 5.3850 -0.9222 7.0867 22 6 5.8134 0.3719 7.2169 23 1 5.5843 0.9289 8.1134 24 6 6.5421 0.9678 6.1968 25 7 7.0799 0.2257 5.2521 26 14 6.7594 2.8228 6.1646 27 1 6.0627 3.4231 7.3306 28 1 8.2058 3.1530 6.2290 29 1 6.1828 3.3670 4.9090 30 6 5.0825 -1.4866 5.7612 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8901 38 1 1.9444 -4.3877 -1.1735 39 1 2.7596 -5.7627 0.6942 40 1 3.2490 -4.6918 2.8783 41 1 3.5406 -3.7040 4.4340 42 1 4.2866 -3.8622 6.8026 43 1 2.5481 -3.5055 6.9355 44 1 3.6893 -3.0657 9.0833 45 1 3.0734 -1.5491 8.3825 46 1 5.2917 -1.5808 10.4134 47 1 6.4313 -0.5309 9.5375 48 1 4.6962 -0.1346 9.5637 49 1 7.5895 0.6421 4.5394 50 1 5.7981 -2.2751 5.5283 51 1 5.1439 -0.7027 5.0063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072130220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:09 Heat of formation + Delta-G solvation = -18.250675 kcal Electronic energy + Delta-G solvation = -31862.026542 eV Core-core repulsion = 27762.388353 eV Total energy + Delta-G solvation = -4099.638189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.92116 -39.11065 -38.21514 -37.41770 -34.37088 -33.23613 -32.96491 -32.61124 -30.75286 -30.07452 -29.69461 -27.27581 -26.10158 -25.08774 -24.44773 -23.53925 -22.22647 -21.30538 -20.86465 -19.98077 -19.30230 -18.54505 -17.30525 -16.93969 -16.31938 -15.79913 -15.44641 -15.14562 -15.01418 -14.48246 -14.30417 -14.18939 -13.87133 -13.74197 -13.55602 -13.32557 -13.26120 -13.05540 -12.68007 -12.45767 -12.34310 -12.32674 -12.27266 -11.96753 -11.81755 -11.41028 -11.08260 -10.96137 -10.84826 -10.79358 -10.67903 -10.48216 -10.35183 -10.21066 -10.02927 -9.94685 -9.90921 -9.67131 -9.40090 -9.21510 -8.60157 -8.40520 -8.36236 -6.55341 -5.68989 -3.13492 0.66918 1.14561 2.99780 3.16318 3.44817 3.50736 3.53853 3.54975 3.92674 4.14449 4.58303 4.59074 4.76015 4.84521 4.91392 4.96343 5.02197 5.19367 5.34868 5.39792 5.41727 5.51748 5.55605 5.61590 5.66794 5.70312 5.73714 5.75616 5.80913 5.91306 6.01069 6.10176 6.13931 6.18991 6.27660 6.30722 6.35433 6.42904 6.49364 6.54724 6.66339 6.79099 7.00837 7.08529 7.16634 7.30142 7.37440 7.67026 7.80129 7.91201 8.00310 8.55288 8.73826 9.29489 9.94038 10.50006 11.39356 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.003623 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.890943 B = 7726.143873 C = 9447.330448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.076 3.924 3 C -0.151 4.151 4 O -0.259 6.259 5 C 0.374 3.626 6 N -0.548 5.548 7 C 0.159 3.841 8 C -0.225 4.225 9 C -0.010 4.010 10 C -0.202 4.202 11 C 0.557 3.443 12 O -0.505 6.505 13 N -0.719 5.719 14 C 0.119 3.881 15 H 0.083 0.917 16 C -0.116 4.116 17 C -0.126 4.126 18 C 0.165 3.835 19 H 0.024 0.976 20 C -0.136 4.136 21 N -0.584 5.584 22 C -0.252 4.252 23 H 0.070 0.930 24 C 0.007 3.993 25 N -0.899 5.899 26 Si 0.898 3.102 27 H -0.277 1.277 28 H -0.291 1.291 29 H -0.288 1.288 30 C 0.169 3.831 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.161 0.839 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.388 0.612 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.037 0.963 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.252 0.748 50 H 0.016 0.984 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.654 -11.360 -9.279 18.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.020 3.980 3 C -0.208 4.208 4 O -0.164 6.164 5 C 0.194 3.806 6 N -0.272 5.272 7 C 0.002 3.998 8 C -0.245 4.245 9 C -0.036 4.036 10 C -0.208 4.208 11 C 0.342 3.658 12 O -0.380 6.380 13 N -0.370 5.370 14 C 0.014 3.986 15 H 0.101 0.899 16 C -0.154 4.154 17 C -0.166 4.166 18 C 0.059 3.941 19 H 0.042 0.958 20 C -0.194 4.194 21 N -0.307 5.307 22 C -0.382 4.382 23 H 0.088 0.912 24 C -0.192 4.192 25 N -0.543 5.543 26 Si 0.729 3.271 27 H -0.202 1.202 28 H -0.218 1.218 29 H -0.215 1.215 30 C 0.042 3.958 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.178 0.822 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.222 0.778 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.062 0.938 50 H 0.034 0.966 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.940 -9.647 -9.775 18.199 hybrid contribution 0.517 -0.259 0.194 0.610 sum -11.423 -9.906 -9.581 17.900 Atomic orbital electron populations 1.22207 0.94983 1.02551 1.02639 1.22421 0.94344 0.93321 0.87949 1.21886 1.02375 0.93677 1.02854 1.86651 1.77838 1.14606 1.37262 1.19860 0.87410 0.85231 0.88066 1.67407 1.23042 1.12663 1.24075 1.22592 0.90735 0.87761 0.98675 1.21874 1.06585 1.01892 0.94160 1.21650 0.91759 0.92329 0.97890 1.20232 1.10961 0.94206 0.95397 1.17696 0.78235 0.87007 0.82887 1.90877 1.50621 1.13503 1.82958 1.45949 1.67713 1.11142 1.12240 1.21963 1.02034 0.94479 0.80111 0.89935 1.21681 1.00195 0.97953 0.95596 1.22046 1.00170 0.99226 0.95148 1.20480 0.92405 0.92708 0.88554 0.95825 1.21801 1.02563 0.99483 0.95536 1.44083 1.76579 1.10106 0.99939 1.19161 1.27385 0.87544 1.04078 0.91223 1.25074 0.97030 0.97967 0.99097 1.70012 1.35875 1.33549 1.14908 0.86283 0.77165 0.85998 0.77703 1.20209 1.21846 1.21497 1.21108 0.87970 0.97507 0.89244 0.91761 0.91231 0.92288 0.89523 0.91613 0.90773 0.91232 0.82164 0.84117 0.83906 0.77849 0.92327 0.93103 0.92706 0.92065 0.94393 0.92006 0.92805 0.93835 0.96560 0.88864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.53 37.16 0.35 -1.55 16 2 C 0.08 1.03 3.11 -26.73 -0.08 0.94 16 3 C -0.15 -1.89 9.56 37.15 0.36 -1.53 16 4 O -0.26 -4.55 7.86 -39.75 -0.31 -4.86 16 5 C 0.37 5.98 7.47 -16.61 -0.12 5.86 16 6 N -0.55 -7.22 8.64 -12.98 -0.11 -7.33 16 7 C 0.16 1.55 11.17 -17.49 -0.20 1.36 16 8 C -0.22 -1.99 10.09 -39.50 -0.40 -2.39 16 9 C -0.01 -0.11 9.64 -38.89 -0.37 -0.49 16 10 C -0.20 -3.13 5.90 -104.69 -0.62 -3.75 16 11 C 0.56 10.60 7.74 -12.47 -0.10 10.50 16 12 O -0.50 -11.99 14.86 -16.48 -0.24 -12.23 16 13 N -0.72 -12.13 5.03 -54.73 -0.28 -12.41 16 14 C 0.12 2.36 2.61 -67.81 -0.18 2.19 16 15 H 0.08 1.87 7.58 -51.93 -0.39 1.48 16 16 C -0.12 -1.88 5.35 -26.69 -0.14 -2.03 16 17 C -0.13 -2.16 5.37 -26.61 -0.14 -2.31 16 18 C 0.17 3.41 3.49 -67.60 -0.24 3.18 16 19 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.14 -2.59 7.95 37.16 0.30 -2.29 16 21 N -0.58 -14.75 3.00 -164.55 -0.49 -15.24 16 22 C -0.25 -7.01 8.58 -15.06 -0.13 -7.14 16 23 H 0.07 1.89 6.23 -52.49 -0.33 1.56 16 24 C 0.01 0.21 4.95 -17.43 -0.09 0.12 16 25 N -0.90 -27.15 11.23 55.49 0.62 -26.52 16 26 Si 0.90 22.79 29.58 -169.99 -5.03 17.77 16 27 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 30 C 0.17 4.15 4.87 -3.55 -0.02 4.14 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.12 6.98 -51.93 -0.36 0.75 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 40 H 0.14 1.17 6.51 -52.49 -0.34 0.83 16 41 H 0.39 5.02 6.70 -40.82 -0.27 4.74 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.27 7.65 -51.93 -0.40 0.87 16 48 H 0.05 1.04 7.42 -51.92 -0.39 0.66 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.09 2.73 6.16 -51.93 -0.32 2.41 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -35.10 404.41 -9.84 -44.95 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.28 Total: 4.98 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -1.82 Total: 4.81 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.26 Total: -61.50 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.56 Total: -17.09 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.10 -9.84 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072130220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.696 kcal (2) G-P(sol) polarization free energy of solvation -35.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds