Wall clock time and date at job start Wed Apr 1 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47018 * 2 1 4 4 O 1.42895 * 109.47092 * 119.99759 * 2 1 3 5 5 C 1.35429 * 116.99771 * 90.00094 * 4 2 1 6 6 N 1.32238 * 119.79990 * 359.97438 * 5 4 2 7 7 C 1.31884 * 121.80127 * 180.02562 * 6 5 4 8 8 C 1.38355 * 121.18769 * 0.02562 * 7 6 5 9 9 C 1.38346 * 119.45431 * 359.73752 * 8 7 6 10 10 C 1.39981 * 118.34953 * 0.50171 * 9 8 7 11 11 C 1.47523 * 120.59853 * 179.77840 * 10 9 8 12 12 O 1.21591 * 120.00409 * 179.71962 * 11 10 9 13 13 N 1.34780 * 120.00011 * 359.72665 * 11 10 9 14 14 C 1.46500 * 120.00236 * 180.02562 * 13 11 10 15 15 H 1.09004 * 109.52197 * 34.91066 * 14 13 11 16 16 C 1.53036 * 109.49913 * 154.99532 * 14 13 11 17 17 C 1.53041 * 109.53965 * 181.31441 * 16 14 13 18 18 C 1.53191 * 109.31254 * 298.63797 * 17 16 14 19 19 H 1.09002 * 109.58561 * 294.84700 * 18 17 16 20 20 C 1.53000 * 109.58976 * 174.56464 * 18 17 16 21 21 N 1.46926 * 108.89669 * 54.70361 * 18 17 16 22 22 C 1.36935 * 120.63603 * 126.32520 * 21 18 17 23 23 H 1.08002 * 119.99660 * 330.34114 * 22 21 18 24 24 C 1.38810 * 120.00726 * 150.33821 * 22 21 18 25 25 N 1.31624 * 119.99291 * 344.65073 * 24 22 21 26 26 Si 1.86796 * 120.00435 * 164.64705 * 24 22 21 27 27 H 1.48498 * 109.46975 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47091 * 119.99903 * 26 24 22 29 29 H 1.48491 * 109.47212 * 240.00025 * 26 24 22 30 30 C 1.47210 * 118.55427 * 306.46329 * 21 18 17 31 31 H 1.09006 * 109.46778 * 299.99907 * 1 2 3 32 32 H 1.08990 * 109.47402 * 59.99618 * 1 2 3 33 33 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47060 * 240.00115 * 2 1 3 35 35 H 1.08998 * 109.47533 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.47283 * 300.00353 * 3 2 1 37 37 H 1.09006 * 109.47271 * 60.00394 * 3 2 1 38 38 H 1.08000 * 119.40542 * 179.97438 * 7 6 5 39 39 H 1.07995 * 120.27489 * 180.02562 * 8 7 6 40 40 H 1.07998 * 120.82440 * 180.25971 * 9 8 7 41 41 H 0.96998 * 119.99300 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.46070 * 61.29552 * 16 14 13 43 43 H 1.08998 * 109.45994 * 301.33392 * 16 14 13 44 44 H 1.08996 * 109.49924 * 178.68306 * 17 16 14 45 45 H 1.09001 * 109.49378 * 58.58310 * 17 16 14 46 46 H 1.08993 * 109.47152 * 60.27580 * 20 18 17 47 47 H 1.08996 * 109.47418 * 180.28266 * 20 18 17 48 48 H 1.09007 * 109.46915 * 300.28242 * 20 18 17 49 49 H 0.97004 * 119.99680 * 180.02562 * 25 24 22 50 50 H 1.09000 * 109.55879 * 293.69878 * 30 21 18 51 51 H 1.08999 * 109.65160 * 173.39287 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2113 -2.0084 1.0654 6 7 1.9695 -2.6254 -0.0789 7 6 2.1547 -3.9234 -0.2213 8 6 2.6127 -4.7011 0.8273 9 6 2.8866 -4.1066 2.0461 10 6 2.6775 -2.7285 2.1754 11 6 2.9487 -2.0446 3.4541 12 8 2.7681 -0.8462 3.5529 13 7 3.3969 -2.7480 4.5128 14 6 3.6657 -2.0689 5.7828 15 1 2.9439 -1.2647 5.9257 16 6 3.5479 -3.0714 6.9330 17 6 3.7963 -2.3561 8.2630 18 6 5.2146 -1.7770 8.2695 19 1 5.9410 -2.5892 8.2412 20 6 5.4235 -0.9461 9.5372 21 7 5.3850 -0.9222 7.0867 22 6 5.8134 0.3719 7.2169 23 1 5.5843 0.9289 8.1134 24 6 6.5421 0.9678 6.1968 25 7 7.0799 0.2257 5.2521 26 14 6.7594 2.8228 6.1646 27 1 6.0627 3.4231 7.3306 28 1 8.2058 3.1530 6.2290 29 1 6.1828 3.3670 4.9090 30 6 5.0825 -1.4866 5.7612 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8901 38 1 1.9444 -4.3877 -1.1735 39 1 2.7596 -5.7627 0.6942 40 1 3.2490 -4.6918 2.8783 41 1 3.5406 -3.7040 4.4340 42 1 4.2866 -3.8622 6.8026 43 1 2.5481 -3.5055 6.9355 44 1 3.6893 -3.0657 9.0833 45 1 3.0734 -1.5491 8.3825 46 1 5.2917 -1.5808 10.4134 47 1 6.4313 -0.5309 9.5375 48 1 4.6962 -0.1346 9.5637 49 1 7.5895 0.6421 4.5394 50 1 5.7981 -2.2751 5.5283 51 1 5.1439 -0.7027 5.0063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072130220.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:08 Heat of formation + Delta-G solvation = -42.668724 kcal Electronic energy + Delta-G solvation = -31863.085388 eV Core-core repulsion = 27762.388353 eV Total energy + Delta-G solvation = -4100.697035 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.98166 -40.57461 -39.29766 -39.00977 -36.01355 -34.69140 -34.26377 -33.85859 -32.09438 -31.73318 -31.07503 -28.25505 -27.79575 -26.87772 -25.53198 -24.63911 -23.96458 -22.45102 -22.23354 -21.46837 -20.97259 -19.61157 -18.55085 -18.35509 -17.94649 -17.19740 -16.85208 -16.58082 -16.06591 -15.91654 -15.71314 -15.53474 -15.38886 -15.24511 -15.01339 -14.75153 -14.54535 -14.19689 -14.10183 -13.98575 -13.50121 -13.41017 -13.33489 -13.25336 -13.08566 -12.91285 -12.77843 -12.72640 -12.56160 -12.28094 -12.12064 -11.97809 -11.96327 -11.80678 -11.65861 -11.41336 -11.15751 -11.05759 -11.00680 -10.56221 -10.52811 -10.08096 -9.50521 -8.62475 -7.86777 -5.32664 -0.30681 0.25686 1.37132 1.42299 1.49863 1.92020 2.01550 2.15256 2.48905 2.83614 3.23451 3.30861 3.63412 3.75714 3.78282 3.87648 3.96430 3.99523 4.00085 4.09937 4.19017 4.20149 4.28185 4.39611 4.52452 4.60668 4.62384 4.71757 4.73788 4.76289 4.80506 4.81757 4.89255 4.91230 5.01168 5.06996 5.08915 5.14224 5.17473 5.19098 5.30920 5.34217 5.46547 5.50541 5.55217 5.61565 5.69837 5.80408 6.30224 6.40320 6.61082 6.78582 7.14507 7.35403 7.89117 8.38906 9.18574 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010357 B = 0.003623 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.890943 B = 7726.143873 C = 9447.330448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.069 3.931 3 C -0.148 4.148 4 O -0.300 6.300 5 C 0.349 3.651 6 N -0.558 5.558 7 C 0.162 3.838 8 C -0.204 4.204 9 C -0.004 4.004 10 C -0.238 4.238 11 C 0.551 3.449 12 O -0.568 6.568 13 N -0.704 5.704 14 C 0.134 3.866 15 H 0.047 0.953 16 C -0.106 4.106 17 C -0.118 4.118 18 C 0.153 3.847 19 H 0.024 0.976 20 C -0.130 4.130 21 N -0.604 5.604 22 C -0.249 4.249 23 H 0.075 0.925 24 C -0.053 4.053 25 N -0.933 5.933 26 Si 0.953 3.047 27 H -0.261 1.261 28 H -0.286 1.286 29 H -0.303 1.303 30 C 0.182 3.818 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.205 0.795 39 H 0.190 0.810 40 H 0.173 0.827 41 H 0.410 0.590 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.044 0.956 49 H 0.243 0.757 50 H -0.001 1.001 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.157 -15.092 -9.303 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 C -0.205 4.205 4 O -0.206 6.206 5 C 0.170 3.830 6 N -0.282 5.282 7 C 0.005 3.995 8 C -0.224 4.224 9 C -0.030 4.030 10 C -0.244 4.244 11 C 0.339 3.661 12 O -0.448 6.448 13 N -0.357 5.357 14 C 0.028 3.972 15 H 0.065 0.935 16 C -0.144 4.144 17 C -0.158 4.158 18 C 0.048 3.952 19 H 0.042 0.958 20 C -0.187 4.187 21 N -0.328 5.328 22 C -0.379 4.379 23 H 0.092 0.908 24 C -0.248 4.248 25 N -0.580 5.580 26 Si 0.782 3.218 27 H -0.185 1.185 28 H -0.213 1.213 29 H -0.231 1.231 30 C 0.055 3.945 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.222 0.778 39 H 0.207 0.793 40 H 0.190 0.810 41 H 0.248 0.752 42 H 0.096 0.904 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.052 0.948 50 H 0.017 0.983 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.455 -13.446 -9.762 21.380 hybrid contribution 0.976 0.756 0.138 1.242 sum -12.479 -12.690 -9.624 20.233 Atomic orbital electron populations 1.22134 0.93430 1.02465 1.03324 1.22646 0.95617 0.93180 0.87262 1.21920 1.01134 0.93843 1.03651 1.86608 1.78586 1.16174 1.39199 1.20098 0.88719 0.84952 0.89276 1.67474 1.23515 1.14473 1.22749 1.23510 0.88592 0.86604 1.00777 1.22399 1.03705 1.03938 0.92350 1.22048 0.90604 0.90282 1.00021 1.20114 1.14448 0.96237 0.93630 1.18382 0.76953 0.86507 0.84296 1.90834 1.53417 1.16376 1.84140 1.45706 1.66922 1.12065 1.10980 1.21490 0.97471 0.95232 0.83043 0.93492 1.21651 1.02882 0.96919 0.92965 1.21958 0.96855 0.99813 0.97133 1.20814 0.94841 0.92307 0.87208 0.95846 1.21737 1.00788 0.99725 0.96456 1.44386 1.76737 1.10177 1.01532 1.19501 1.25621 0.89110 1.03670 0.90773 1.25789 0.97950 1.01618 0.99465 1.70168 1.37480 1.34726 1.15627 0.85400 0.77219 0.81858 0.77303 1.18506 1.21279 1.23113 1.20771 0.90615 0.95180 0.87978 0.93151 0.88314 0.92681 0.88988 0.93532 0.87220 0.93046 0.77817 0.79327 0.81020 0.75185 0.90449 0.89532 0.88341 0.93153 0.90141 0.94345 0.93725 0.94803 0.98255 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.53 71.98 0.69 -2.96 16 2 C 0.07 1.96 3.11 30.59 0.10 2.05 16 3 C -0.15 -4.00 9.56 71.98 0.69 -3.31 16 4 O -0.30 -11.42 7.86 -66.43 -0.52 -11.94 16 5 C 0.35 11.54 7.47 85.13 0.64 12.18 16 6 N -0.56 -14.15 8.64 -307.99 -2.66 -16.81 16 7 C 0.16 2.57 11.17 84.71 0.95 3.51 16 8 C -0.20 -2.69 10.09 22.32 0.23 -2.46 16 9 C 0.00 -0.08 9.64 22.72 0.22 0.14 16 10 C -0.24 -7.53 5.90 -19.91 -0.12 -7.65 16 11 C 0.55 22.23 7.74 86.69 0.67 22.90 16 12 O -0.57 -29.64 14.86 16.81 0.25 -29.39 16 13 N -0.70 -24.10 5.03 -445.34 -2.24 -26.34 16 14 C 0.13 5.43 2.61 45.07 0.12 5.55 16 15 H 0.05 2.25 7.58 -2.38 -0.02 2.23 16 16 C -0.11 -3.16 5.35 30.62 0.16 -3.00 16 17 C -0.12 -3.72 5.37 30.67 0.16 -3.56 16 18 C 0.15 6.19 3.49 44.97 0.16 6.34 16 19 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 20 C -0.13 -4.75 7.95 71.98 0.57 -4.17 16 21 N -0.60 -31.47 3.00 -674.50 -2.02 -33.49 16 22 C -0.25 -14.35 8.58 84.03 0.72 -13.63 16 23 H 0.07 4.13 6.23 -2.91 -0.02 4.11 16 24 C -0.05 -3.21 4.95 84.86 0.42 -2.79 16 25 N -0.93 -59.88 11.23 21.65 0.24 -59.64 16 26 Si 0.95 49.15 29.58 68.60 2.03 51.18 16 27 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.30 -16.24 7.11 99.48 0.71 -15.54 16 30 C 0.18 9.42 4.87 86.31 0.42 9.84 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 2.44 6.98 -2.39 -0.02 2.42 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.11 2.06 8.14 -2.38 -0.02 2.05 16 37 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.17 2.16 6.51 -2.91 -0.02 2.14 16 41 H 0.41 9.95 6.70 -92.71 -0.62 9.33 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 47 H 0.04 1.55 7.65 -2.39 -0.02 1.53 16 48 H 0.04 1.69 7.42 -2.38 -0.02 1.67 16 49 H 0.24 15.30 8.31 -92.71 -0.77 14.53 16 50 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 51 H 0.04 2.31 6.16 -2.39 -0.01 2.29 16 Total: -1.00 -88.03 404.41 2.17 -85.86 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.31 Total: 21.59 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.79 Total: 18.98 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -6.68 Total: -136.28 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.27 Total: -41.33 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Total: -88.03 2.17 -85.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072130220.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.188 kcal (2) G-P(sol) polarization free energy of solvation -88.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds