Wall clock time and date at job start Wed Apr 1 2020 05:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47230 * 2 1 4 4 O 1.42909 * 109.46915 * 119.99694 * 2 1 3 5 5 C 1.35429 * 116.99815 * 90.00027 * 4 2 1 6 6 N 1.32240 * 119.80051 * 0.27031 * 5 4 2 7 7 C 1.31885 * 121.79701 * 180.26952 * 6 5 4 8 8 C 1.38352 * 121.18370 * 359.72037 * 7 6 5 9 9 C 1.38336 * 119.46427 * 0.02562 * 8 7 6 10 10 C 1.39984 * 118.34508 * 359.97438 * 9 8 7 11 11 C 1.47527 * 120.59579 * 179.97438 * 10 9 8 12 12 O 1.21594 * 119.99847 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99793 * 359.73289 * 11 10 9 14 14 C 1.46500 * 119.99756 * 180.27429 * 13 11 10 15 15 H 1.09004 * 109.50444 * 35.05988 * 14 13 11 16 16 C 1.53043 * 109.49869 * 155.15859 * 14 13 11 17 17 C 1.53038 * 109.53831 * 58.58580 * 16 14 13 18 18 C 1.53193 * 109.31536 * 61.36318 * 17 16 14 19 19 H 1.09001 * 109.58646 * 65.15221 * 18 17 16 20 20 C 1.52996 * 109.58920 * 185.57928 * 18 17 16 21 21 N 1.46921 * 108.77588 * 305.36863 * 18 17 16 22 22 C 1.36939 * 120.63225 * 233.62957 * 21 18 17 23 23 H 1.08004 * 120.00089 * 29.00023 * 22 21 18 24 24 C 1.38810 * 120.00180 * 209.00712 * 22 21 18 25 25 N 1.31626 * 120.00223 * 15.01679 * 24 22 21 26 26 Si 1.86798 * 120.00230 * 195.01859 * 24 22 21 27 27 H 1.48498 * 109.47122 * 59.99633 * 26 24 22 28 28 H 1.48502 * 109.47592 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47108 * 299.99849 * 26 24 22 30 30 C 1.46933 * 118.74081 * 53.60709 * 21 18 17 31 31 H 1.09003 * 109.47115 * 60.00648 * 1 2 3 32 32 H 1.09002 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47258 * 300.00074 * 1 2 3 34 34 H 1.09003 * 109.47477 * 239.99175 * 2 1 3 35 35 H 1.09005 * 109.47155 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47365 * 299.99430 * 3 2 1 37 37 H 1.08996 * 109.47384 * 60.00089 * 3 2 1 38 38 H 1.07993 * 119.40272 * 179.75027 * 7 6 5 39 39 H 1.08006 * 120.26919 * 180.02562 * 8 7 6 40 40 H 1.07999 * 120.82943 * 180.02562 * 9 8 7 41 41 H 0.96995 * 120.00309 * 0.26913 * 13 11 10 42 42 H 1.09003 * 109.45940 * 178.60138 * 16 14 13 43 43 H 1.08998 * 109.46226 * 298.56400 * 16 14 13 44 44 H 1.09010 * 109.49683 * 301.41480 * 17 16 14 45 45 H 1.08992 * 109.52664 * 181.33554 * 17 16 14 46 46 H 1.09005 * 109.47507 * 179.28914 * 20 18 17 47 47 H 1.08998 * 109.47063 * 299.29437 * 20 18 17 48 48 H 1.08998 * 109.47164 * 59.29093 * 20 18 17 49 49 H 0.96997 * 120.00187 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.58669 * 186.60384 * 30 21 18 51 51 H 1.08999 * 109.70137 * 66.25131 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2112 -2.0085 1.0656 6 7 1.9750 -2.6246 -0.0804 7 6 2.1560 -3.9233 -0.2214 8 6 2.6092 -4.7016 0.8288 9 6 2.8773 -4.1082 2.0493 10 6 2.6778 -2.7284 2.1755 11 6 2.9474 -2.0446 3.4547 12 8 2.7700 -0.8457 3.5523 13 7 3.3848 -2.7499 4.5166 14 6 3.6468 -2.0719 5.7886 15 1 2.9254 -1.2665 5.9270 16 6 3.5204 -3.0748 6.9376 17 6 4.5102 -4.2228 6.7262 18 6 5.9378 -3.6670 6.7243 19 1 6.1739 -3.2629 7.7088 20 6 6.9228 -4.7846 6.3757 21 7 6.0283 -2.5994 5.7191 22 6 6.9922 -2.6361 4.7472 23 1 7.3733 -3.5852 4.4000 24 6 7.4797 -1.4534 4.2081 25 7 7.2490 -0.3088 4.8157 26 14 8.4631 -1.4863 2.6203 27 1 7.6292 -2.0591 1.5333 28 1 8.8655 -0.1033 2.2584 29 1 9.6762 -2.3224 2.8065 30 6 5.0646 -1.4917 5.7762 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.9471 -4.3874 -1.1739 39 1 2.7527 -5.7639 0.6968 40 1 3.2323 -4.6946 2.8838 41 1 3.5260 -3.7064 4.4388 42 1 3.7398 -2.5754 7.8813 43 1 2.5053 -3.4709 6.9639 44 1 4.3071 -4.7070 5.7709 45 1 4.4035 -4.9488 7.5320 46 1 7.9366 -4.3844 6.3625 47 1 6.8540 -5.5755 7.1225 48 1 6.6795 -5.1901 5.3937 49 1 7.5900 0.5175 4.4392 50 1 5.1903 -0.8526 4.9022 51 1 5.2287 -0.9082 6.6821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072130221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:13 Heat of formation + Delta-G solvation = -15.967417 kcal Electronic energy + Delta-G solvation = -32709.414250 eV Core-core repulsion = 28609.875070 eV Total energy + Delta-G solvation = -4099.539179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.79222 -39.14475 -38.11644 -37.33626 -34.08673 -33.16806 -32.86930 -32.53056 -30.68169 -29.99170 -29.70375 -27.23718 -26.23352 -25.02762 -24.45383 -23.52577 -22.13831 -21.27000 -20.84357 -20.23658 -18.74665 -18.43008 -17.38884 -16.79774 -16.17595 -15.69781 -15.38481 -15.02854 -14.87503 -14.40751 -14.31799 -14.09641 -13.92925 -13.72274 -13.53460 -13.25482 -13.13571 -12.89313 -12.72348 -12.45311 -12.34890 -12.26573 -12.23226 -11.90649 -11.84913 -11.18340 -11.14788 -10.91973 -10.90482 -10.86126 -10.72326 -10.67018 -10.36964 -10.32036 -9.93602 -9.87491 -9.83157 -9.49926 -9.41802 -9.13150 -8.46729 -8.40078 -8.21471 -6.55925 -5.70349 -3.14505 0.82076 1.28980 3.09927 3.31339 3.40490 3.47062 3.48211 3.70783 4.09804 4.27719 4.53646 4.74355 4.91058 4.91708 5.01601 5.05147 5.16916 5.25958 5.33910 5.38901 5.44140 5.53644 5.55008 5.59121 5.62920 5.74909 5.78489 5.82385 5.88296 6.03553 6.06409 6.13262 6.15305 6.18072 6.22965 6.34440 6.36286 6.39991 6.46458 6.55662 6.62824 6.73419 6.94915 7.06771 7.14897 7.40613 7.45999 7.75881 7.80127 7.87695 8.19014 8.53882 8.90601 9.28015 9.92725 10.48447 11.37438 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.004280 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.073474 B = 6540.008723 C = 7222.305316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 C -0.150 4.150 4 O -0.260 6.260 5 C 0.372 3.628 6 N -0.549 5.549 7 C 0.157 3.843 8 C -0.224 4.224 9 C -0.008 4.008 10 C -0.197 4.197 11 C 0.561 3.439 12 O -0.520 6.520 13 N -0.698 5.698 14 C 0.121 3.879 15 H 0.076 0.924 16 C -0.119 4.119 17 C -0.130 4.130 18 C 0.165 3.835 19 H 0.025 0.975 20 C -0.135 4.135 21 N -0.582 5.582 22 C -0.251 4.251 23 H 0.067 0.933 24 C 0.008 3.992 25 N -0.898 5.898 26 Si 0.894 3.106 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.161 3.839 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.391 0.609 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.036 0.964 48 H 0.051 0.949 49 H 0.254 0.746 50 H 0.098 0.902 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.889 -8.122 -6.281 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 C -0.207 4.207 4 O -0.164 6.164 5 C 0.192 3.808 6 N -0.273 5.273 7 C 0.000 4.000 8 C -0.244 4.244 9 C -0.033 4.033 10 C -0.203 4.203 11 C 0.346 3.654 12 O -0.397 6.397 13 N -0.349 5.349 14 C 0.015 3.985 15 H 0.094 0.906 16 C -0.157 4.157 17 C -0.169 4.169 18 C 0.058 3.942 19 H 0.042 0.958 20 C -0.193 4.193 21 N -0.305 5.305 22 C -0.380 4.380 23 H 0.084 0.916 24 C -0.191 4.191 25 N -0.542 5.542 26 Si 0.725 3.275 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.210 1.210 30 C 0.035 3.965 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.226 0.774 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.116 0.884 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.194 -6.331 -6.697 16.094 hybrid contribution 0.963 -1.023 -0.453 1.476 sum -12.231 -7.354 -7.150 15.963 Atomic orbital electron populations 1.22200 0.95060 1.02533 1.02499 1.22402 0.94260 0.93302 0.88173 1.21872 1.02368 0.93747 1.02705 1.86638 1.78016 1.14693 1.37060 1.19830 0.87701 0.85137 0.88112 1.67376 1.23271 1.12651 1.24017 1.22549 0.91070 0.87762 0.98623 1.21863 1.06519 1.01897 0.94122 1.21650 0.91302 0.92456 0.97940 1.20228 1.10401 0.94127 0.95557 1.17603 0.78021 0.86864 0.82882 1.90807 1.52072 1.13579 1.83251 1.45705 1.66700 1.11293 1.11220 1.21766 1.00957 0.94484 0.81313 0.90607 1.21693 0.98329 0.97181 0.98465 1.22066 0.97807 0.96899 1.00153 1.20454 0.91362 0.89725 0.92615 0.95789 1.21792 1.00602 0.97007 0.99876 1.44033 1.33152 1.22989 1.30375 1.19007 1.14805 0.91860 1.12346 0.91571 1.25028 0.98710 0.96223 0.99178 1.69963 1.48410 0.97629 1.38188 0.86500 0.79985 0.76666 0.84379 1.21276 1.21675 1.20984 1.21198 0.83350 0.89882 1.02094 0.91323 0.92292 0.91834 0.89566 0.91646 0.90857 0.91321 0.82262 0.84180 0.83987 0.77403 0.91095 0.93066 0.92879 0.92884 0.92038 0.94465 0.93035 0.93632 0.88378 0.95771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.53 37.16 0.35 -1.60 16 2 C 0.08 1.07 3.11 -26.74 -0.08 0.98 16 3 C -0.15 -1.92 9.56 37.15 0.36 -1.57 16 4 O -0.26 -4.79 7.86 -39.75 -0.31 -5.10 16 5 C 0.37 6.51 7.47 -16.61 -0.12 6.38 16 6 N -0.55 -8.09 8.64 -12.98 -0.11 -8.20 16 7 C 0.16 1.80 11.17 -17.49 -0.20 1.61 16 8 C -0.22 -2.45 10.09 -39.50 -0.40 -2.85 16 9 C -0.01 -0.10 9.64 -38.89 -0.37 -0.48 16 10 C -0.20 -3.44 5.90 -104.69 -0.62 -4.06 16 11 C 0.56 11.41 7.74 -12.47 -0.10 11.31 16 12 O -0.52 -12.45 14.86 -16.49 -0.24 -12.70 16 13 N -0.70 -12.82 4.87 -54.73 -0.27 -13.09 16 14 C 0.12 2.33 2.81 -67.81 -0.19 2.14 16 15 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 16 C -0.12 -1.87 5.59 -26.69 -0.15 -2.02 16 17 C -0.13 -2.03 5.21 -26.61 -0.14 -2.17 16 18 C 0.17 3.22 3.50 -67.60 -0.24 2.98 16 19 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.14 -2.41 7.94 37.16 0.30 -2.11 16 21 N -0.58 -13.81 2.91 -164.77 -0.48 -14.29 16 22 C -0.25 -6.62 8.60 -15.06 -0.13 -6.75 16 23 H 0.07 1.70 6.21 -52.48 -0.33 1.38 16 24 C 0.01 0.22 4.96 -17.43 -0.09 0.13 16 25 N -0.90 -26.69 11.14 55.49 0.62 -26.08 16 26 Si 0.89 22.43 29.58 -169.99 -5.03 17.40 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 30 C 0.16 3.89 4.89 -3.71 -0.02 3.87 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.20 6.98 -51.93 -0.36 0.84 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.14 1.61 6.51 -52.49 -0.34 1.27 16 41 H 0.39 6.26 4.87 -40.82 -0.20 6.06 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.80 6.40 -51.92 -0.33 0.47 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.21 7.62 -51.93 -0.40 0.82 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.05 0.91 7.44 -51.93 -0.39 0.53 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 51 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 400.68 15.07 6.04 6.04 Total: -1.00 -33.53 400.68 -9.73 -43.25 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.11 Total: 6.95 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -1.83 Total: 5.81 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.24 Total: -61.66 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.56 Total: -17.80 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.53 -9.73 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072130221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.286 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds