Wall clock time and date at job start Wed Apr 1 2020 05:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47230 * 2 1 4 4 O 1.42909 * 109.46915 * 119.99694 * 2 1 3 5 5 C 1.35429 * 116.99815 * 90.00027 * 4 2 1 6 6 N 1.32240 * 119.80051 * 0.27031 * 5 4 2 7 7 C 1.31885 * 121.79701 * 180.26952 * 6 5 4 8 8 C 1.38352 * 121.18370 * 359.72037 * 7 6 5 9 9 C 1.38336 * 119.46427 * 0.02562 * 8 7 6 10 10 C 1.39984 * 118.34508 * 359.97438 * 9 8 7 11 11 C 1.47527 * 120.59579 * 179.97438 * 10 9 8 12 12 O 1.21594 * 119.99847 * 180.02562 * 11 10 9 13 13 N 1.34775 * 119.99793 * 359.73289 * 11 10 9 14 14 C 1.46500 * 119.99756 * 180.27429 * 13 11 10 15 15 H 1.09004 * 109.50444 * 35.05988 * 14 13 11 16 16 C 1.53043 * 109.49869 * 155.15859 * 14 13 11 17 17 C 1.53038 * 109.53831 * 58.58580 * 16 14 13 18 18 C 1.53193 * 109.31536 * 61.36318 * 17 16 14 19 19 H 1.09001 * 109.58646 * 65.15221 * 18 17 16 20 20 C 1.52996 * 109.58920 * 185.57928 * 18 17 16 21 21 N 1.46921 * 108.77588 * 305.36863 * 18 17 16 22 22 C 1.36939 * 120.63225 * 233.62957 * 21 18 17 23 23 H 1.08004 * 120.00089 * 29.00023 * 22 21 18 24 24 C 1.38810 * 120.00180 * 209.00712 * 22 21 18 25 25 N 1.31626 * 120.00223 * 15.01679 * 24 22 21 26 26 Si 1.86798 * 120.00230 * 195.01859 * 24 22 21 27 27 H 1.48498 * 109.47122 * 59.99633 * 26 24 22 28 28 H 1.48502 * 109.47592 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47108 * 299.99849 * 26 24 22 30 30 C 1.46933 * 118.74081 * 53.60709 * 21 18 17 31 31 H 1.09003 * 109.47115 * 60.00648 * 1 2 3 32 32 H 1.09002 * 109.47365 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47258 * 300.00074 * 1 2 3 34 34 H 1.09003 * 109.47477 * 239.99175 * 2 1 3 35 35 H 1.09005 * 109.47155 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47365 * 299.99430 * 3 2 1 37 37 H 1.08996 * 109.47384 * 60.00089 * 3 2 1 38 38 H 1.07993 * 119.40272 * 179.75027 * 7 6 5 39 39 H 1.08006 * 120.26919 * 180.02562 * 8 7 6 40 40 H 1.07999 * 120.82943 * 180.02562 * 9 8 7 41 41 H 0.96995 * 120.00309 * 0.26913 * 13 11 10 42 42 H 1.09003 * 109.45940 * 178.60138 * 16 14 13 43 43 H 1.08998 * 109.46226 * 298.56400 * 16 14 13 44 44 H 1.09010 * 109.49683 * 301.41480 * 17 16 14 45 45 H 1.08992 * 109.52664 * 181.33554 * 17 16 14 46 46 H 1.09005 * 109.47507 * 179.28914 * 20 18 17 47 47 H 1.08998 * 109.47063 * 299.29437 * 20 18 17 48 48 H 1.08998 * 109.47164 * 59.29093 * 20 18 17 49 49 H 0.96997 * 120.00187 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.58669 * 186.60384 * 30 21 18 51 51 H 1.08999 * 109.70137 * 66.25131 * 30 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2112 -2.0085 1.0656 6 7 1.9750 -2.6246 -0.0804 7 6 2.1560 -3.9233 -0.2214 8 6 2.6092 -4.7016 0.8288 9 6 2.8773 -4.1082 2.0493 10 6 2.6778 -2.7284 2.1755 11 6 2.9474 -2.0446 3.4547 12 8 2.7700 -0.8457 3.5523 13 7 3.3848 -2.7499 4.5166 14 6 3.6468 -2.0719 5.7886 15 1 2.9254 -1.2665 5.9270 16 6 3.5204 -3.0748 6.9376 17 6 4.5102 -4.2228 6.7262 18 6 5.9378 -3.6670 6.7243 19 1 6.1739 -3.2629 7.7088 20 6 6.9228 -4.7846 6.3757 21 7 6.0283 -2.5994 5.7191 22 6 6.9922 -2.6361 4.7472 23 1 7.3733 -3.5852 4.4000 24 6 7.4797 -1.4534 4.2081 25 7 7.2490 -0.3088 4.8157 26 14 8.4631 -1.4863 2.6203 27 1 7.6292 -2.0591 1.5333 28 1 8.8655 -0.1033 2.2584 29 1 9.6762 -2.3224 2.8065 30 6 5.0646 -1.4917 5.7762 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5140 -0.8899 35 1 3.1300 1.4424 -0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 1.9471 -4.3874 -1.1739 39 1 2.7527 -5.7639 0.6968 40 1 3.2323 -4.6946 2.8838 41 1 3.5260 -3.7064 4.4388 42 1 3.7398 -2.5754 7.8813 43 1 2.5053 -3.4709 6.9639 44 1 4.3071 -4.7070 5.7709 45 1 4.4035 -4.9488 7.5320 46 1 7.9366 -4.3844 6.3625 47 1 6.8540 -5.5755 7.1225 48 1 6.6795 -5.1901 5.3937 49 1 7.5900 0.5175 4.4392 50 1 5.1903 -0.8526 4.9022 51 1 5.2287 -0.9082 6.6821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072130221.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:11 Heat of formation + Delta-G solvation = -38.278480 kcal Electronic energy + Delta-G solvation = -32710.381730 eV Core-core repulsion = 28609.875070 eV Total energy + Delta-G solvation = -4100.506659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.96096 -40.64802 -39.26777 -38.91369 -35.77495 -34.55090 -34.24451 -33.84108 -32.03198 -31.71990 -31.03067 -28.23920 -27.87077 -26.81849 -25.61557 -24.67517 -23.86355 -22.46794 -22.20922 -21.72974 -20.37299 -19.62347 -18.69201 -18.24777 -17.77034 -17.11954 -16.84269 -16.43648 -16.07913 -15.89735 -15.75776 -15.53310 -15.40174 -15.19895 -14.89945 -14.66505 -14.41762 -14.22661 -14.04384 -13.94326 -13.60229 -13.39079 -13.31725 -13.23774 -12.97662 -12.89869 -12.85947 -12.59797 -12.56907 -12.40625 -12.14027 -12.07485 -11.95323 -11.79333 -11.56573 -11.21153 -11.09835 -11.01525 -10.97960 -10.56106 -10.47076 -9.93998 -9.47627 -8.56573 -7.81491 -5.26223 -0.28133 0.25946 1.36659 1.40934 1.45109 1.98188 2.02485 2.31292 2.49001 2.86797 3.26372 3.34777 3.64505 3.76319 3.80055 3.89038 3.98052 4.00470 4.05676 4.12060 4.19320 4.20181 4.24403 4.51230 4.52631 4.62436 4.67831 4.74894 4.76609 4.77577 4.82714 4.83885 4.90523 4.98429 5.06592 5.09179 5.12000 5.13400 5.15542 5.19033 5.28676 5.34248 5.48223 5.59817 5.63729 5.70844 5.76744 5.77698 6.31151 6.44778 6.66817 6.80685 7.19181 7.42220 7.94498 8.44879 9.23496 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.004280 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.073474 B = 6540.008723 C = 7222.305316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 C -0.147 4.147 4 O -0.297 6.297 5 C 0.348 3.652 6 N -0.557 5.557 7 C 0.160 3.840 8 C -0.206 4.206 9 C -0.006 4.006 10 C -0.237 4.237 11 C 0.553 3.447 12 O -0.573 6.573 13 N -0.686 5.686 14 C 0.130 3.870 15 H 0.060 0.940 16 C -0.110 4.110 17 C -0.118 4.118 18 C 0.153 3.847 19 H 0.012 0.988 20 C -0.128 4.128 21 N -0.593 5.593 22 C -0.232 4.232 23 H 0.080 0.920 24 C -0.056 4.056 25 N -0.937 5.937 26 Si 0.946 3.054 27 H -0.287 1.287 28 H -0.306 1.306 29 H -0.266 1.266 30 C 0.172 3.828 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.109 0.891 37 H 0.055 0.945 38 H 0.206 0.794 39 H 0.188 0.812 40 H 0.164 0.836 41 H 0.405 0.595 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.033 0.967 47 H 0.076 0.924 48 H 0.054 0.946 49 H 0.240 0.760 50 H 0.045 0.955 51 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -12.970 -7.450 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.011 3.989 3 C -0.204 4.204 4 O -0.203 6.203 5 C 0.169 3.831 6 N -0.282 5.282 7 C 0.003 3.997 8 C -0.225 4.225 9 C -0.032 4.032 10 C -0.243 4.243 11 C 0.340 3.660 12 O -0.454 6.454 13 N -0.338 5.338 14 C 0.023 3.977 15 H 0.078 0.922 16 C -0.148 4.148 17 C -0.157 4.157 18 C 0.048 3.952 19 H 0.030 0.970 20 C -0.185 4.185 21 N -0.317 5.317 22 C -0.363 4.363 23 H 0.097 0.903 24 C -0.251 4.251 25 N -0.585 5.585 26 Si 0.776 3.224 27 H -0.214 1.214 28 H -0.233 1.233 29 H -0.191 1.191 30 C 0.045 3.955 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.222 0.778 39 H 0.205 0.795 40 H 0.181 0.819 41 H 0.243 0.757 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.052 0.948 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -14.497 -11.268 -7.850 19.969 hybrid contribution 1.355 0.378 -0.113 1.411 sum -13.142 -10.890 -7.963 18.834 Atomic orbital electron populations 1.22123 0.93237 1.02433 1.03421 1.22667 0.95756 0.93288 0.87224 1.21907 1.00993 0.93680 1.03820 1.86596 1.78662 1.15944 1.39110 1.20054 0.88831 0.85030 0.89164 1.67458 1.23647 1.14359 1.22717 1.23475 0.88849 0.86661 1.00667 1.22377 1.03855 1.03951 0.92352 1.21986 0.90598 0.90684 0.99951 1.20187 1.13799 0.96071 0.94258 1.18227 0.77042 0.86503 0.84185 1.90767 1.54362 1.15966 1.84271 1.45551 1.66020 1.11751 1.10465 1.21468 0.96958 0.95633 0.83617 0.92205 1.21665 1.00556 0.96218 0.96335 1.21962 0.94185 0.97125 1.02429 1.20790 0.94884 0.88913 0.90621 0.96989 1.21723 0.98272 0.97145 1.01400 1.44249 1.32553 1.23649 1.31275 1.19390 1.13378 0.91782 1.11741 0.90293 1.25719 1.00932 0.96359 1.02057 1.70152 1.50801 0.97818 1.39696 0.85642 0.79434 0.75883 0.81418 1.21415 1.23315 1.19103 1.20831 0.86708 0.89757 0.98196 0.88337 0.92828 0.92836 0.89398 0.93767 0.87248 0.92583 0.77764 0.79501 0.81869 0.75749 0.90945 0.89584 0.91632 0.88906 0.94785 0.90497 0.92689 0.95050 0.93640 0.98800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 9.53 71.98 0.69 -2.97 16 2 C 0.07 1.96 3.11 30.59 0.10 2.05 16 3 C -0.15 -3.98 9.56 71.98 0.69 -3.29 16 4 O -0.30 -11.71 7.86 -66.43 -0.52 -12.23 16 5 C 0.35 12.45 7.47 85.13 0.64 13.08 16 6 N -0.56 -15.70 8.64 -308.00 -2.66 -18.36 16 7 C 0.16 3.07 11.17 84.71 0.95 4.01 16 8 C -0.21 -3.56 10.09 22.32 0.23 -3.33 16 9 C -0.01 -0.16 9.64 22.72 0.22 0.06 16 10 C -0.24 -8.35 5.90 -19.91 -0.12 -8.47 16 11 C 0.55 23.50 7.74 86.69 0.67 24.17 16 12 O -0.57 -29.77 14.86 16.81 0.25 -29.52 16 13 N -0.69 -25.25 4.87 -445.32 -2.17 -27.42 16 14 C 0.13 5.13 2.81 45.07 0.13 5.25 16 15 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 16 C -0.11 -3.20 5.59 30.62 0.17 -3.03 16 17 C -0.12 -3.21 5.21 30.67 0.16 -3.05 16 18 C 0.15 5.68 3.50 44.97 0.16 5.84 16 19 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 20 C -0.13 -4.17 7.94 71.98 0.57 -3.60 16 21 N -0.59 -28.51 2.91 -675.21 -1.96 -30.48 16 22 C -0.23 -12.41 8.60 84.03 0.72 -11.68 16 23 H 0.08 3.97 6.21 -2.91 -0.02 3.96 16 24 C -0.06 -3.26 4.96 84.86 0.42 -2.84 16 25 N -0.94 -59.45 11.14 21.65 0.24 -59.21 16 26 Si 0.95 47.60 29.58 68.60 2.03 49.63 16 27 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.31 -16.02 7.11 99.48 0.71 -15.31 16 29 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 30 C 0.17 8.77 4.89 86.36 0.42 9.19 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 2.48 6.98 -2.39 -0.02 2.47 16 35 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 40 H 0.16 3.09 6.51 -2.91 -0.02 3.07 16 41 H 0.40 12.16 4.87 -92.71 -0.45 11.70 16 42 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.07 1.66 6.40 -2.38 -0.02 1.64 16 45 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.03 1.27 7.62 -2.38 -0.02 1.26 16 47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.05 1.74 7.44 -2.39 -0.02 1.73 16 49 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 50 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 51 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 Total: -1.00 -83.01 400.68 2.49 -80.52 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.48 Total: 25.65 kcal Atomic # 6 Polarization: 14.60 SS G_CDS: 6.80 Total: 21.40 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -6.55 Total: -135.46 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.27 Total: -41.75 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -83.01 2.49 -80.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072130221.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.246 kcal (2) G-P(sol) polarization free energy of solvation -83.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds