Wall clock time and date at job start Wed Apr 1 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46758 * 2 1 4 4 O 1.42891 * 109.46919 * 119.99584 * 2 1 3 5 5 C 1.35673 * 116.99911 * 154.94841 * 4 2 1 6 6 C 1.38938 * 120.57666 * 5.52452 * 5 4 2 7 7 N 1.31633 * 120.79270 * 180.25997 * 6 5 4 8 8 C 1.31907 * 122.14486 * 359.73553 * 7 6 5 9 9 C 1.37962 * 121.07359 * 0.02562 * 8 7 6 10 10 C 1.39941 * 119.07283 * 359.97438 * 9 8 7 11 11 C 1.47843 * 120.96576 * 179.97438 * 10 9 8 12 12 O 1.21549 * 120.00100 * 179.97438 * 11 10 9 13 13 N 1.34778 * 119.99768 * 359.97438 * 11 10 9 14 14 C 1.46496 * 119.99796 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47461 * 35.00226 * 14 13 11 16 16 C 1.53004 * 109.47041 * 274.99981 * 14 13 11 17 17 C 1.53007 * 109.47109 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47262 * 59.99897 * 17 16 14 19 19 C 1.53004 * 109.47143 * 300.00082 * 18 17 16 20 20 C 1.53000 * 109.47020 * 155.00068 * 14 13 11 21 21 H 1.09006 * 109.47237 * 60.00123 * 20 14 13 22 22 N 1.46498 * 109.47357 * 299.99905 * 20 14 13 23 23 C 1.36931 * 120.00174 * 154.99992 * 22 20 14 24 24 H 1.07998 * 120.00342 * 359.97438 * 23 22 20 25 25 C 1.38821 * 119.99842 * 179.97438 * 23 22 20 26 26 N 1.31613 * 119.99792 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99819 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47200 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46946 * 120.00382 * 27 25 23 30 30 H 1.48503 * 109.46853 * 240.00090 * 27 25 23 31 31 H 1.08995 * 109.47289 * 299.99821 * 1 2 3 32 32 H 1.09005 * 109.46890 * 60.00179 * 1 2 3 33 33 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47289 * 240.00179 * 2 1 3 35 35 H 1.08996 * 109.47176 * 299.99797 * 3 2 1 36 36 H 1.09003 * 109.47341 * 59.99947 * 3 2 1 37 37 H 1.08998 * 109.46890 * 180.02562 * 3 2 1 38 38 H 1.08000 * 119.60702 * 359.97373 * 6 5 4 39 39 H 1.07998 * 119.45656 * 180.02562 * 8 7 6 40 40 H 1.08009 * 120.46182 * 179.97438 * 9 8 7 41 41 H 0.96998 * 120.00132 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.47117 * 60.00183 * 16 14 13 43 43 H 1.09006 * 109.46757 * 299.99824 * 16 14 13 44 44 H 1.08996 * 109.46661 * 299.99901 * 17 16 14 45 45 H 1.08994 * 109.46897 * 179.97438 * 17 16 14 46 46 H 1.09005 * 109.47166 * 59.99570 * 18 17 16 47 47 H 1.08990 * 109.47064 * 179.97438 * 18 17 16 48 48 H 1.09001 * 109.47117 * 179.97438 * 19 18 17 49 49 H 1.08996 * 109.47279 * 300.00301 * 19 18 17 50 50 H 0.96998 * 119.99771 * 334.99651 * 22 20 14 51 51 H 0.97010 * 119.99822 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.2441 -1.2247 1.0977 6 6 4.0430 -1.0299 -0.0223 7 7 5.2426 -1.5668 -0.0960 8 6 5.7432 -2.3026 0.8776 9 6 5.0232 -2.5453 2.0292 10 6 3.7419 -1.9974 2.1582 11 6 2.9336 -2.2311 3.3739 12 8 1.8229 -1.7463 3.4676 13 7 3.4283 -2.9816 4.3781 14 6 2.6271 -3.2136 5.5824 15 1 1.5746 -3.2896 5.3096 16 6 2.8191 -2.0481 6.5550 17 6 1.9828 -2.2907 7.8131 18 6 2.4321 -3.5918 8.4812 19 6 2.2401 -4.7572 7.5086 20 6 3.0759 -4.5147 6.2507 21 1 4.1285 -4.4387 6.5236 22 7 2.8922 -5.6306 5.3195 23 6 3.6525 -6.7621 5.4483 24 1 4.3880 -6.8318 6.2361 25 6 3.4780 -7.8198 4.5662 26 7 2.5821 -7.7347 3.6059 27 14 4.5158 -9.3631 4.7414 28 1 5.4427 -9.2084 5.8913 29 1 3.6295 -10.5317 4.9743 30 1 5.2997 -9.5762 3.4983 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 3.6736 -0.4346 -0.8442 39 1 6.7327 -2.7220 0.7715 40 1 5.4426 -3.1496 2.8201 41 1 4.3145 -3.3687 4.3031 42 1 2.4993 -1.1212 6.0789 43 1 3.8717 -1.9723 6.8279 44 1 0.9302 -2.3669 7.5405 45 1 2.1199 -1.4607 8.5061 46 1 3.4848 -3.5156 8.7537 47 1 1.8366 -3.7643 9.3776 48 1 2.5607 -5.6840 7.9844 49 1 1.1876 -4.8334 7.2360 50 1 2.2319 -5.5680 4.6118 51 1 2.4604 -8.4736 2.9892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085284430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:59 Heat of formation + Delta-G solvation = -40.775293 kcal Electronic energy + Delta-G solvation = -31684.693274 eV Core-core repulsion = 27584.078345 eV Total energy + Delta-G solvation = -4100.614929 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00618 -39.46641 -38.48489 -37.64620 -34.06373 -33.82163 -33.60679 -32.21790 -31.14479 -30.25745 -29.21586 -27.69706 -27.50455 -24.83597 -23.86693 -23.66929 -22.08522 -21.41842 -21.08141 -20.19600 -19.68137 -18.47332 -17.49111 -17.11838 -16.83897 -15.79737 -15.69217 -15.42756 -14.99575 -14.67261 -14.48568 -14.33380 -14.07380 -13.91351 -13.72104 -13.60931 -13.32291 -13.23514 -12.97842 -12.76567 -12.60588 -12.55080 -12.28501 -12.12960 -12.08568 -11.91476 -11.25300 -11.09319 -11.04347 -10.94565 -10.84184 -10.75962 -10.57292 -10.33239 -10.15082 -9.98197 -9.75552 -9.72651 -9.64781 -9.30259 -8.93843 -8.60609 -8.44313 -7.00459 -5.79747 -3.09665 0.74791 1.07978 2.95595 3.15302 3.39205 3.41688 3.45506 3.47985 3.88802 4.29649 4.46992 4.53680 4.59018 4.66536 4.73999 4.82732 4.84896 5.06843 5.12542 5.16499 5.29231 5.30692 5.36929 5.45807 5.51347 5.52768 5.56093 5.58557 5.70438 5.73208 5.82775 5.84230 5.89400 5.90635 5.95749 5.98171 6.00094 6.11847 6.33027 6.39170 6.45614 6.48564 6.50951 6.58230 6.85529 6.89760 7.07997 7.20150 7.66167 7.80287 7.90528 8.37099 8.58006 9.49088 10.05656 10.40880 11.42101 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.003578 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.010385 B = 7823.507282 C = 9541.007284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 C -0.180 4.180 4 O -0.267 6.267 5 C 0.135 3.865 6 C 0.005 3.995 7 N -0.436 5.436 8 C 0.050 3.950 9 C -0.092 4.092 10 C -0.122 4.122 11 C 0.560 3.440 12 O -0.522 6.522 13 N -0.702 5.702 14 C 0.143 3.857 15 H 0.085 0.915 16 C -0.124 4.124 17 C -0.113 4.113 18 C -0.119 4.119 19 C -0.133 4.133 20 C 0.173 3.827 21 H 0.050 0.950 22 N -0.722 5.722 23 C -0.241 4.241 24 H 0.071 0.929 25 C -0.010 4.010 26 N -0.928 5.928 27 Si 0.903 3.097 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.162 0.838 39 H 0.163 0.837 40 H 0.148 0.852 41 H 0.401 0.599 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.057 0.943 50 H 0.385 0.615 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 17.698 -3.151 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 C -0.237 4.237 4 O -0.177 6.177 5 C 0.085 3.915 6 C -0.154 4.154 7 N -0.146 5.146 8 C -0.106 4.106 9 C -0.113 4.113 10 C -0.134 4.134 11 C 0.346 3.654 12 O -0.398 6.398 13 N -0.352 5.352 14 C 0.038 3.962 15 H 0.103 0.897 16 C -0.163 4.163 17 C -0.152 4.152 18 C -0.158 4.158 19 C -0.174 4.174 20 C 0.063 3.937 21 H 0.068 0.932 22 N -0.363 5.363 23 C -0.372 4.372 24 H 0.089 0.911 25 C -0.206 4.206 26 N -0.576 5.576 27 Si 0.735 3.265 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.179 0.821 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.236 0.764 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.076 0.924 50 H 0.219 0.781 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.369 18.039 -3.615 18.449 hybrid contribution 0.348 -1.366 0.293 1.440 sum 1.718 16.673 -3.322 17.088 Atomic orbital electron populations 1.21817 0.91953 1.03628 1.02957 1.22589 0.96232 0.92655 0.87368 1.22401 1.01938 0.95979 1.03425 1.86437 1.27417 1.66298 1.37563 1.20103 0.86044 0.91529 0.93869 1.22958 0.91527 1.03451 0.97501 1.67338 1.12027 1.06085 1.29132 1.22546 1.00829 0.97739 0.89511 1.22345 0.92659 0.96744 0.99543 1.19957 0.95987 1.01609 0.95808 1.17797 0.85994 0.79370 0.82288 1.90789 1.19099 1.49799 1.80100 1.45778 1.20610 1.51388 1.17459 1.21310 0.96479 0.94889 0.83542 0.89698 1.21877 1.00225 0.98448 0.95746 1.21469 0.99935 0.97490 0.96256 1.21582 1.00808 0.95143 0.98218 1.22211 1.01117 0.97371 0.96681 1.20456 0.97193 0.86272 0.89816 0.93179 1.42431 1.45763 1.13811 1.34266 1.19240 1.13894 0.92894 1.11174 0.91143 1.24735 0.99345 0.98455 0.98107 1.69685 1.36478 1.32220 1.19196 0.86182 0.79514 0.83693 0.77147 1.20575 1.21938 1.21926 0.91166 0.90592 0.91341 0.90885 0.90810 0.91124 0.91971 0.82064 0.81962 0.83414 0.76385 0.91901 0.92049 0.91952 0.92401 0.92394 0.92688 0.91582 0.92440 0.78122 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 37.16 0.36 -1.02 16 2 C 0.07 0.71 2.85 -26.73 -0.08 0.63 16 3 C -0.18 -1.50 9.18 37.16 0.34 -1.16 16 4 O -0.27 -3.99 8.03 -39.91 -0.32 -4.31 16 5 C 0.14 2.01 6.64 -38.53 -0.26 1.75 16 6 C 0.01 0.07 9.44 -17.38 -0.16 -0.10 16 7 N -0.44 -5.88 10.32 -13.17 -0.14 -6.01 16 8 C 0.05 0.62 11.16 -17.62 -0.20 0.42 16 9 C -0.09 -1.23 9.61 -39.04 -0.38 -1.60 16 10 C -0.12 -1.92 5.92 -104.54 -0.62 -2.54 16 11 C 0.56 10.02 7.75 -12.33 -0.10 9.93 16 12 O -0.52 -10.77 14.97 -15.87 -0.24 -11.00 16 13 N -0.70 -11.68 4.87 -54.75 -0.27 -11.95 16 14 C 0.14 2.43 1.98 -67.93 -0.13 2.30 16 15 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 16 C -0.12 -1.77 5.50 -26.73 -0.15 -1.92 16 17 C -0.11 -1.48 5.92 -26.73 -0.16 -1.63 16 18 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 19 C -0.13 -2.28 5.50 -26.75 -0.15 -2.43 16 20 C 0.17 3.22 2.29 -67.95 -0.16 3.06 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.07 4.95 -53.44 -0.26 -17.33 16 23 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -27.47 13.06 55.49 0.72 -26.74 16 27 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 30 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.67 6.33 -51.93 -0.33 0.34 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.53 6.94 -51.93 -0.36 0.17 16 38 H 0.16 1.63 5.46 -52.49 -0.29 1.34 16 39 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.15 1.70 6.54 -52.48 -0.34 1.36 16 41 H 0.40 6.19 6.74 -40.82 -0.28 5.91 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 50 H 0.38 10.14 7.80 -40.82 -0.32 9.83 16 51 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 407.23 15.07 6.14 6.14 Total: -1.00 -32.49 407.23 -9.81 -42.30 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -8.19 Total: 15.09 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: -2.23 Total: -2.91 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.06 Total: -62.04 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.56 Total: -15.31 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.49 -9.81 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085284430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.526 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds