Wall clock time and date at job start Wed Apr 1 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46758 * 2 1 4 4 O 1.42891 * 109.46919 * 119.99584 * 2 1 3 5 5 C 1.35673 * 116.99911 * 154.94841 * 4 2 1 6 6 C 1.38938 * 120.57666 * 5.52452 * 5 4 2 7 7 N 1.31633 * 120.79270 * 180.25997 * 6 5 4 8 8 C 1.31907 * 122.14486 * 359.73553 * 7 6 5 9 9 C 1.37962 * 121.07359 * 0.02562 * 8 7 6 10 10 C 1.39941 * 119.07283 * 359.97438 * 9 8 7 11 11 C 1.47843 * 120.96576 * 179.97438 * 10 9 8 12 12 O 1.21549 * 120.00100 * 179.97438 * 11 10 9 13 13 N 1.34778 * 119.99768 * 359.97438 * 11 10 9 14 14 C 1.46496 * 119.99796 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47461 * 35.00226 * 14 13 11 16 16 C 1.53004 * 109.47041 * 274.99981 * 14 13 11 17 17 C 1.53007 * 109.47109 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.47262 * 59.99897 * 17 16 14 19 19 C 1.53004 * 109.47143 * 300.00082 * 18 17 16 20 20 C 1.53000 * 109.47020 * 155.00068 * 14 13 11 21 21 H 1.09006 * 109.47237 * 60.00123 * 20 14 13 22 22 N 1.46498 * 109.47357 * 299.99905 * 20 14 13 23 23 C 1.36931 * 120.00174 * 154.99992 * 22 20 14 24 24 H 1.07998 * 120.00342 * 359.97438 * 23 22 20 25 25 C 1.38821 * 119.99842 * 179.97438 * 23 22 20 26 26 N 1.31613 * 119.99792 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99819 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47200 * 0.02562 * 27 25 23 29 29 H 1.48503 * 109.46946 * 120.00382 * 27 25 23 30 30 H 1.48503 * 109.46853 * 240.00090 * 27 25 23 31 31 H 1.08995 * 109.47289 * 299.99821 * 1 2 3 32 32 H 1.09005 * 109.46890 * 60.00179 * 1 2 3 33 33 H 1.09000 * 109.46927 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47289 * 240.00179 * 2 1 3 35 35 H 1.08996 * 109.47176 * 299.99797 * 3 2 1 36 36 H 1.09003 * 109.47341 * 59.99947 * 3 2 1 37 37 H 1.08998 * 109.46890 * 180.02562 * 3 2 1 38 38 H 1.08000 * 119.60702 * 359.97373 * 6 5 4 39 39 H 1.07998 * 119.45656 * 180.02562 * 8 7 6 40 40 H 1.08009 * 120.46182 * 179.97438 * 9 8 7 41 41 H 0.96998 * 120.00132 * 359.97438 * 13 11 10 42 42 H 1.09001 * 109.47117 * 60.00183 * 16 14 13 43 43 H 1.09006 * 109.46757 * 299.99824 * 16 14 13 44 44 H 1.08996 * 109.46661 * 299.99901 * 17 16 14 45 45 H 1.08994 * 109.46897 * 179.97438 * 17 16 14 46 46 H 1.09005 * 109.47166 * 59.99570 * 18 17 16 47 47 H 1.08990 * 109.47064 * 179.97438 * 18 17 16 48 48 H 1.09001 * 109.47117 * 179.97438 * 19 18 17 49 49 H 1.08996 * 109.47279 * 300.00301 * 19 18 17 50 50 H 0.96998 * 119.99771 * 334.99651 * 22 20 14 51 51 H 0.97010 * 119.99822 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 3.2441 -1.2247 1.0977 6 6 4.0430 -1.0299 -0.0223 7 7 5.2426 -1.5668 -0.0960 8 6 5.7432 -2.3026 0.8776 9 6 5.0232 -2.5453 2.0292 10 6 3.7419 -1.9974 2.1582 11 6 2.9336 -2.2311 3.3739 12 8 1.8229 -1.7463 3.4676 13 7 3.4283 -2.9816 4.3781 14 6 2.6271 -3.2136 5.5824 15 1 1.5746 -3.2896 5.3096 16 6 2.8191 -2.0481 6.5550 17 6 1.9828 -2.2907 7.8131 18 6 2.4321 -3.5918 8.4812 19 6 2.2401 -4.7572 7.5086 20 6 3.0759 -4.5147 6.2507 21 1 4.1285 -4.4387 6.5236 22 7 2.8922 -5.6306 5.3195 23 6 3.6525 -6.7621 5.4483 24 1 4.3880 -6.8318 6.2361 25 6 3.4780 -7.8198 4.5662 26 7 2.5821 -7.7347 3.6059 27 14 4.5158 -9.3631 4.7414 28 1 5.4427 -9.2084 5.8913 29 1 3.6295 -10.5317 4.9743 30 1 5.2997 -9.5762 3.4983 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 3.6736 -0.4346 -0.8442 39 1 6.7327 -2.7220 0.7715 40 1 5.4426 -3.1496 2.8201 41 1 4.3145 -3.3687 4.3031 42 1 2.4993 -1.1212 6.0789 43 1 3.8717 -1.9723 6.8279 44 1 0.9302 -2.3669 7.5405 45 1 2.1199 -1.4607 8.5061 46 1 3.4848 -3.5156 8.7537 47 1 1.8366 -3.7643 9.3776 48 1 2.5607 -5.6840 7.9844 49 1 1.1876 -4.8334 7.2360 50 1 2.2319 -5.5680 4.6118 51 1 2.4604 -8.4736 2.9892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085284430.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:58 Heat of formation + Delta-G solvation = -60.938337 kcal Electronic energy + Delta-G solvation = -31685.567609 eV Core-core repulsion = 27584.078345 eV Total energy + Delta-G solvation = -4101.489265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.09426 -40.79172 -39.49272 -39.03452 -35.81524 -35.23445 -34.50796 -33.30452 -32.95837 -31.27548 -30.53742 -29.30392 -28.23219 -26.02837 -25.58168 -24.81309 -23.35152 -22.51201 -22.33631 -21.51175 -20.94925 -19.66600 -19.07265 -18.47816 -18.04732 -17.08395 -16.79148 -16.67876 -16.47327 -15.94287 -15.71998 -15.52531 -15.33022 -15.21951 -14.95477 -14.88915 -14.62873 -14.55511 -14.11576 -14.03274 -13.66650 -13.57879 -13.52457 -13.37042 -13.01152 -12.91363 -12.84708 -12.75515 -12.21248 -12.17399 -12.05148 -12.02024 -12.00346 -11.85780 -11.66033 -11.43762 -11.30956 -11.08222 -10.89033 -10.84794 -10.46887 -9.97253 -9.49846 -8.99311 -7.90410 -5.19573 -0.38252 0.05396 1.48591 1.49912 1.59101 1.86729 2.03842 2.11958 2.57569 2.76798 3.36736 3.42738 3.49860 3.60078 3.67383 3.71016 3.82145 3.85852 3.95720 4.08228 4.11071 4.15910 4.26003 4.31116 4.41279 4.43350 4.48259 4.58671 4.65241 4.68487 4.70517 4.77697 4.79166 4.83135 4.85885 4.95201 5.01191 5.15435 5.19484 5.23670 5.24144 5.29715 5.30813 5.42638 5.46448 5.53271 5.57100 5.67718 6.23891 6.28853 6.55306 6.78324 7.21264 7.35785 8.09180 8.33744 9.32858 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.003578 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3066.010385 B = 7823.507282 C = 9541.007284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.055 3.945 3 C -0.173 4.173 4 O -0.296 6.296 5 C 0.124 3.876 6 C 0.012 3.988 7 N -0.444 5.444 8 C 0.051 3.949 9 C -0.091 4.091 10 C -0.152 4.152 11 C 0.556 3.444 12 O -0.559 6.559 13 N -0.697 5.697 14 C 0.150 3.850 15 H 0.051 0.949 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.109 4.109 19 C -0.128 4.128 20 C 0.173 3.827 21 H 0.062 0.938 22 N -0.732 5.732 23 C -0.228 4.228 24 H 0.082 0.918 25 C -0.073 4.073 26 N -0.970 5.970 27 Si 0.967 3.033 28 H -0.262 1.262 29 H -0.302 1.302 30 H -0.296 1.296 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.189 0.811 39 H 0.195 0.805 40 H 0.162 0.838 41 H 0.407 0.593 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.052 0.948 49 H 0.039 0.961 50 H 0.367 0.633 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 18.969 -2.624 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.000 4.000 3 C -0.230 4.230 4 O -0.207 6.207 5 C 0.073 3.927 6 C -0.148 4.148 7 N -0.154 5.154 8 C -0.105 4.105 9 C -0.111 4.111 10 C -0.164 4.164 11 C 0.343 3.657 12 O -0.438 6.438 13 N -0.348 5.348 14 C 0.045 3.955 15 H 0.069 0.931 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.147 4.147 19 C -0.169 4.169 20 C 0.065 3.935 21 H 0.080 0.920 22 N -0.371 5.371 23 C -0.360 4.360 24 H 0.099 0.901 25 C -0.265 4.265 26 N -0.622 5.622 27 Si 0.797 3.203 28 H -0.186 1.186 29 H -0.230 1.230 30 H -0.224 1.224 31 H 0.077 0.923 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.205 0.795 39 H 0.212 0.788 40 H 0.179 0.821 41 H 0.243 0.757 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.198 0.802 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.410 19.337 -3.030 19.868 hybrid contribution -0.311 -1.694 0.134 1.728 sum 3.100 17.643 -2.897 18.146 Atomic orbital electron populations 1.21862 0.91551 1.02752 1.04021 1.22964 0.96671 0.93753 0.86590 1.22358 1.01810 0.94515 1.04305 1.86415 1.27624 1.66757 1.39946 1.20308 0.86463 0.91643 0.94276 1.23318 0.91029 1.03045 0.97387 1.67432 1.12172 1.06330 1.29440 1.23055 1.01808 0.96967 0.88661 1.22527 0.91750 0.96418 1.00421 1.20014 0.97113 1.03670 0.95555 1.18197 0.85773 0.78795 0.82959 1.90754 1.20735 1.51415 1.80913 1.45752 1.20672 1.51025 1.17305 1.21189 0.94622 0.95487 0.84244 0.93071 1.21808 1.01695 0.96393 0.95431 1.21476 0.99002 0.98321 0.96006 1.21514 1.02251 0.93316 0.97630 1.22086 0.99496 0.98658 0.96653 1.20662 0.98035 0.85283 0.89556 0.92038 1.42607 1.45007 1.14708 1.34770 1.19624 1.13021 0.93172 1.10171 0.90064 1.25476 1.01027 1.01566 0.98476 1.69858 1.38886 1.32812 1.20598 0.85163 0.78005 0.79816 0.77309 1.18612 1.22983 1.22365 0.92335 0.87227 0.93166 0.89434 0.87885 0.92230 0.92050 0.79452 0.78843 0.82066 0.75661 0.92760 0.90099 0.92974 0.89424 0.90772 0.90829 0.92954 0.94233 0.80167 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.56 71.98 0.69 -2.03 16 2 C 0.06 1.13 2.85 30.60 0.09 1.22 16 3 C -0.17 -2.65 9.18 71.98 0.66 -1.99 16 4 O -0.30 -9.16 8.03 -69.65 -0.56 -9.72 16 5 C 0.12 3.73 6.64 22.95 0.15 3.88 16 6 C 0.01 0.29 9.44 84.89 0.80 1.09 16 7 N -0.44 -11.23 10.32 -195.59 -2.02 -13.25 16 8 C 0.05 1.17 11.16 84.62 0.94 2.12 16 9 C -0.09 -2.36 9.61 22.62 0.22 -2.15 16 10 C -0.15 -4.90 5.92 -19.81 -0.12 -5.02 16 11 C 0.56 20.75 7.75 86.79 0.67 21.42 16 12 O -0.56 -24.45 14.97 16.39 0.25 -24.21 16 13 N -0.70 -23.74 4.87 -445.42 -2.17 -25.91 16 14 C 0.15 5.19 1.98 44.99 0.09 5.28 16 15 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 16 C -0.11 -3.13 5.50 30.60 0.17 -2.97 16 17 C -0.11 -2.63 5.92 30.60 0.18 -2.45 16 18 C -0.11 -2.68 5.92 30.60 0.18 -2.50 16 19 C -0.13 -4.33 5.50 30.58 0.17 -4.16 16 20 C 0.17 6.41 2.29 44.98 0.10 6.51 16 21 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 22 N -0.73 -35.25 4.95 -323.00 -1.60 -36.85 16 23 C -0.23 -11.93 9.93 84.04 0.83 -11.09 16 24 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 25 C -0.07 -4.08 5.50 84.87 0.47 -3.62 16 26 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 27 Si 0.97 45.01 29.55 68.60 2.03 47.03 16 28 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 30 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.49 6.33 -2.39 -0.02 1.48 16 35 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.95 6.94 -2.39 -0.02 0.94 16 38 H 0.19 3.42 5.46 -2.91 -0.02 3.40 16 39 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 40 H 0.16 3.58 6.54 -2.91 -0.02 3.56 16 41 H 0.41 12.59 6.74 -92.71 -0.62 11.97 16 42 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.92 8.14 -2.38 -0.02 1.91 16 44 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 49 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.37 20.19 7.80 -92.71 -0.72 19.47 16 51 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -73.09 407.23 2.11 -70.98 By element: Atomic # 1 Polarization: 47.61 SS G_CDS: -0.40 Total: 47.21 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.30 Total: 3.54 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -5.50 Total: -134.84 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.31 Total: -33.93 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -73.09 2.11 -70.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085284430.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.044 kcal (2) G-P(sol) polarization free energy of solvation -73.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds