Wall clock time and date at job start Wed Apr 1 2020 05:00:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47245 * 2 1
4 4 O 1.42896 * 109.47525 * 180.02562 * 3 2 1
5 5 C 1.35648 * 116.99892 * 179.97438 * 4 3 2
6 6 C 1.39339 * 120.54099 * 359.97438 * 5 4 3
7 7 C 1.38301 * 118.44092 * 180.02562 * 6 5 4
8 8 C 1.38774 * 119.44172 * 0.02562 * 7 6 5
9 9 N 1.31370 * 121.06823 * 359.73099 * 8 7 6
10 10 C 1.32857 * 121.69526 * 0.53067 * 9 8 7
11 11 C 1.47836 * 119.78585 * 179.74893 * 10 9 8
12 12 O 1.21552 * 119.99859 * 179.72983 * 11 10 9
13 13 N 1.34777 * 119.99800 * 359.72801 * 11 10 9
14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10
15 15 C 1.52993 * 109.47551 * 180.02562 * 14 13 11
16 16 H 1.08997 * 110.43663 * 307.54498 * 15 14 13
17 17 C 1.54894 * 110.48476 * 70.22881 * 15 14 13
18 18 C 1.54890 * 102.74958 * 156.62341 * 17 15 14
19 19 C 1.54263 * 104.19462 * 322.05707 * 18 17 15
20 20 H 1.09000 * 110.07417 * 142.91777 * 19 18 17
21 21 N 1.46504 * 110.03219 * 264.32474 * 19 18 17
22 22 C 1.36936 * 120.00248 * 272.16862 * 21 19 18
23 23 H 1.08002 * 119.99736 * 359.97438 * 22 21 19
24 24 C 1.38810 * 119.99705 * 179.97438 * 22 21 19
25 25 N 1.31615 * 120.00518 * 359.97438 * 24 22 21
26 26 Si 1.86802 * 119.99581 * 179.97438 * 24 22 21
27 27 H 1.48506 * 109.47187 * 0.02562 * 26 24 22
28 28 H 1.48503 * 109.47139 * 120.00125 * 26 24 22
29 29 H 1.48498 * 109.47353 * 240.00078 * 26 24 22
30 30 C 1.53871 * 106.59821 * 23.60926 * 19 18 17
31 31 H 1.09001 * 109.46898 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47123 * 299.99964 * 1 2 3
33 33 H 1.08997 * 109.46821 * 60.00699 * 1 2 3
34 34 H 1.09003 * 109.47788 * 239.99905 * 2 1 3
35 35 H 1.09003 * 109.47485 * 119.99428 * 2 1 3
36 36 H 1.08995 * 109.46962 * 59.99025 * 3 2 1
37 37 H 1.09003 * 109.46413 * 300.00085 * 3 2 1
38 38 H 1.08000 * 120.78213 * 0.04471 * 6 5 4
39 39 H 1.08001 * 120.28223 * 180.02562 * 7 6 5
40 40 H 1.08004 * 119.46639 * 180.02562 * 8 7 6
41 41 H 0.96999 * 120.00047 * 0.02562 * 13 11 10
42 42 H 1.09000 * 109.47024 * 300.00478 * 14 13 11
43 43 H 1.09004 * 109.46875 * 60.00324 * 14 13 11
44 44 H 1.09002 * 110.75085 * 274.93403 * 17 15 14
45 45 H 1.08991 * 110.75862 * 38.30462 * 17 15 14
46 46 H 1.08995 * 110.48352 * 203.37759 * 18 17 15
47 47 H 1.09004 * 110.60123 * 80.78771 * 18 17 15
48 48 H 0.97001 * 119.99561 * 92.16294 * 21 19 18
49 49 H 0.96998 * 120.00373 * 179.97438 * 25 24 22
50 50 H 1.09004 * 110.03408 * 240.71789 * 30 19 18
51 51 H 1.09003 * 110.03280 * 119.29245 * 30 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4426 -0.0006
5 6 4.0847 2.6513 -0.0012
6 6 3.3368 3.8269 -0.0018
7 6 4.0093 5.0354 -0.0030
8 6 5.3971 5.0438 -0.0041
9 7 6.0818 3.9226 0.0013
10 6 5.4809 2.7377 -0.0026
11 6 6.2931 1.5025 -0.0019
12 8 5.7474 0.4163 -0.0004
13 7 7.6386 1.5807 -0.0030
14 6 8.4435 0.3566 -0.0017
15 6 9.9289 0.7230 -0.0027
16 1 10.1492 1.4174 -0.8134
17 6 10.3382 1.3310 1.3619
18 6 11.8640 1.0688 1.4091
19 6 12.0282 -0.3256 0.7702
20 1 12.9381 -0.3578 0.1710
21 7 12.0783 -1.3529 1.8135
22 6 13.2755 -1.6879 2.3877
23 1 14.1828 -1.1950 2.0712
24 6 13.3227 -2.6609 3.3766
25 7 12.2169 -3.2611 3.7628
26 14 14.9560 -3.1183 4.1594
27 1 16.0403 -2.3038 3.5543
28 1 14.8960 -2.8551 5.6197
29 1 15.2300 -4.5591 3.9270
30 6 10.7979 -0.5455 -0.1274
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5137 -0.8900
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5137 0.8900
36 1 1.6766 1.9564 0.8899
37 1 1.6766 1.9563 -0.8900
38 1 2.2573 3.7953 -0.0010
39 1 3.4592 5.9648 -0.0030
40 1 5.9227 5.9873 -0.0046
41 1 8.0740 2.4474 -0.0038
42 1 8.2144 -0.2280 0.8892
43 1 8.2132 -0.2305 -0.8908
44 1 10.1290 2.4005 1.3865
45 1 9.8327 0.8185 2.1803
46 1 12.2178 1.0602 2.4400
47 1 12.4003 1.8198 0.8289
48 1 11.2634 -1.7957 2.0976
49 1 12.2500 -3.9413 4.4535
50 1 10.2380 -1.4165 0.2133
51 1 11.1107 -0.6836 -1.1624
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086793529.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:31
Heat of formation + Delta-G solvation = -43.097677 kcal
Electronic energy + Delta-G solvation = -29853.086253 eV
Core-core repulsion = 25752.370617 eV
Total energy + Delta-G solvation = -4100.715636 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-41.22886 -39.29213 -38.64865 -37.91896 -34.81371 -34.33916 -33.27578 -32.67502
-30.99312 -30.47844 -28.86054 -27.32392 -27.07301 -25.29667 -23.89416 -23.27940
-23.00764 -21.91335 -20.72162 -19.85751 -19.13600 -18.63013 -17.83810 -17.32636
-17.03465 -16.78295 -15.90601 -15.57444 -15.41658 -15.02964 -14.81988 -14.69452
-14.41120 -14.29306 -13.90244 -13.70948 -13.44669 -13.17428 -13.11104 -13.02474
-12.55778 -12.53055 -12.40513 -12.05876 -12.02091 -11.41850 -11.33651 -11.12414
-11.08714 -10.74987 -10.68260 -10.49835 -10.40241 -10.35939 -10.24720 -10.14527
-10.11194 -9.89421 -9.69467 -9.55984 -8.97231 -8.82489 -8.71952 -6.86564
-5.70192 -2.98107 0.33700 0.82942 2.65826 2.68368 3.12865 3.47078
3.52597 3.54928 3.61805 3.95714 4.15831 4.29557 4.43349 4.45361
4.58735 4.64783 4.71896 4.74617 4.95024 4.97606 4.99367 5.07205
5.13820 5.20733 5.22885 5.48485 5.53066 5.57795 5.62216 5.66556
5.70462 5.79424 5.82464 5.86474 5.97567 6.02097 6.11896 6.19810
6.24471 6.32459 6.45511 6.55932 6.58124 6.74750 6.85590 6.86697
7.00337 7.18945 7.33518 7.68361 7.77559 8.30154 8.49189 9.59671
10.20229 10.54176 11.52562
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014135 B = 0.001966 C = 0.001800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1980.470725 B =14237.013517 C =15548.221174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.123 4.123
3 C 0.050 3.950
4 O -0.270 6.270
5 C 0.140 3.860
6 C -0.178 4.178
7 C -0.108 4.108
8 C 0.056 3.944
9 N -0.419 5.419
10 C 0.045 3.955
11 C 0.567 3.433
12 O -0.516 6.516
13 N -0.708 5.708
14 C 0.126 3.874
15 C -0.102 4.102
16 H 0.075 0.925
17 C -0.112 4.112
18 C -0.146 4.146
19 C 0.174 3.826
20 H 0.048 0.952
21 N -0.721 5.721
22 C -0.236 4.236
23 H 0.070 0.930
24 C -0.016 4.016
25 N -0.932 5.932
26 Si 0.905 3.095
27 H -0.281 1.281
28 H -0.293 1.293
29 H -0.292 1.292
30 C -0.121 4.121
31 H 0.066 0.934
32 H 0.056 0.944
33 H 0.056 0.944
34 H 0.077 0.923
35 H 0.078 0.922
36 H 0.063 0.937
37 H 0.062 0.938
38 H 0.145 0.855
39 H 0.143 0.857
40 H 0.166 0.834
41 H 0.408 0.592
42 H 0.073 0.927
43 H 0.066 0.934
44 H 0.053 0.947
45 H 0.068 0.932
46 H 0.071 0.929
47 H 0.048 0.952
48 H 0.383 0.617
49 H 0.254 0.746
50 H 0.072 0.928
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.067 18.612 -11.069 32.376
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.161 4.161
3 C -0.025 4.025
4 O -0.179 6.179
5 C 0.089 3.911
6 C -0.204 4.204
7 C -0.128 4.128
8 C -0.104 4.104
9 N -0.131 5.131
10 C -0.094 4.094
11 C 0.351 3.649
12 O -0.391 6.391
13 N -0.360 5.360
14 C 0.003 3.997
15 C -0.121 4.121
16 H 0.093 0.907
17 C -0.150 4.150
18 C -0.186 4.186
19 C 0.064 3.936
20 H 0.066 0.934
21 N -0.362 5.362
22 C -0.367 4.367
23 H 0.088 0.912
24 C -0.212 4.212
25 N -0.581 5.581
26 Si 0.736 3.264
27 H -0.206 1.206
28 H -0.220 1.220
29 H -0.220 1.220
30 C -0.160 4.160
31 H 0.085 0.915
32 H 0.076 0.924
33 H 0.075 0.925
34 H 0.096 0.904
35 H 0.096 0.904
36 H 0.081 0.919
37 H 0.080 0.920
38 H 0.163 0.837
39 H 0.160 0.840
40 H 0.183 0.817
41 H 0.243 0.757
42 H 0.091 0.909
43 H 0.084 0.916
44 H 0.072 0.928
45 H 0.086 0.914
46 H 0.090 0.910
47 H 0.067 0.933
48 H 0.217 0.783
49 H 0.064 0.936
50 H 0.091 0.909
51 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -23.273 17.507 -11.016 31.136
hybrid contribution -0.354 0.363 0.656 0.829
sum -23.627 17.870 -10.360 31.383
Atomic orbital electron populations
1.21693 0.94228 1.02721 1.01957 1.21467 0.95730 0.94384 1.04525
1.23054 0.78524 0.99722 1.01212 1.86423 1.20892 1.24547 1.86082
1.20023 0.92295 0.85747 0.93007 1.21761 1.01090 0.91863 1.05723
1.22211 0.95807 0.98407 0.96393 1.22709 0.91377 0.96402 0.99949
1.67619 1.39936 0.97405 1.08155 1.20771 0.88610 0.92972 1.07022
1.17592 0.82388 0.87187 0.77748 1.90849 1.71716 1.27496 1.49005
1.45844 1.05395 1.10844 1.73938 1.21559 0.89612 0.85987 1.02496
1.22225 0.92511 0.98650 0.98764 0.90686 1.22494 0.97407 0.98980
0.96120 1.23111 0.94472 0.98983 1.02068 1.20806 0.94874 0.88436
0.89509 0.93412 1.42560 1.07750 1.43167 1.42717 1.19311 0.86971
1.15969 1.14487 0.91179 1.24741 0.96888 0.99614 0.99938 1.69672
1.25548 1.29388 1.33516 0.86146 0.83326 0.77898 0.79006 1.20611
1.21995 1.21970 1.22464 0.96906 0.96700 0.99924 0.91535 0.92446
0.92493 0.90444 0.90352 0.91895 0.91955 0.83729 0.83952 0.81723
0.75653 0.90885 0.91553 0.92845 0.91353 0.91037 0.93340 0.78258
0.93634 0.90897 0.92079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16
2 C -0.12 -0.92 6.30 -26.73 -0.17 -1.09 16
3 C 0.05 0.39 4.76 37.16 0.18 0.57 16
4 O -0.27 -3.30 8.20 -40.59 -0.33 -3.64 16
5 C 0.14 1.60 6.71 -38.56 -0.26 1.34 16
6 C -0.18 -1.35 9.13 -39.15 -0.36 -1.71 16
7 C -0.11 -0.66 10.10 -39.36 -0.40 -1.06 16
8 C 0.06 0.43 11.17 -17.55 -0.20 0.24 16
9 N -0.42 -4.60 9.54 -9.70 -0.09 -4.69 16
10 C 0.05 0.59 6.76 -82.88 -0.56 0.03 16
11 C 0.57 8.67 7.80 -12.33 -0.10 8.58 16
12 O -0.52 -9.48 15.14 -16.63 -0.25 -9.73 16
13 N -0.71 -9.67 5.44 -61.26 -0.33 -10.00 16
14 C 0.13 1.84 4.96 -4.05 -0.02 1.82 16
15 C -0.10 -1.45 2.89 -88.96 -0.26 -1.70 16
16 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
17 C -0.11 -1.74 6.19 -24.74 -0.15 -1.90 16
18 C -0.15 -2.61 6.54 -25.07 -0.16 -2.77 16
19 C 0.17 3.48 3.55 -66.81 -0.24 3.25 16
20 H 0.05 0.98 8.09 -51.93 -0.42 0.56 16
21 N -0.72 -18.25 5.08 -52.34 -0.27 -18.52 16
22 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16
23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16
24 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16
25 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16
26 Si 0.90 22.77 29.55 -169.99 -5.02 17.75 16
27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
28 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16
29 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16
30 C -0.12 -2.01 6.14 -25.62 -0.16 -2.17 16
31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16
32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16
34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16
37 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16
38 H 0.15 0.70 6.46 -52.49 -0.34 0.36 16
39 H 0.14 0.38 8.06 -52.49 -0.42 -0.04 16
40 H 0.17 0.75 8.06 -52.48 -0.42 0.33 16
41 H 0.41 4.91 7.76 -40.82 -0.32 4.60 16
42 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16
43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
45 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16
46 H 0.07 1.47 8.04 -51.93 -0.42 1.05 16
47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
48 H 0.38 10.38 7.52 -40.82 -0.31 10.08 16
49 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16
50 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16
51 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16
LS Contribution 415.92 15.07 6.27 6.27
Total: -1.00 -34.52 415.92 -10.46 -44.98
By element:
Atomic # 1 Polarization: 18.31 SS G_CDS: -8.43 Total: 9.88 kcal
Atomic # 6 Polarization: -1.60 SS G_CDS: -2.72 Total: -4.32 kcal
Atomic # 7 Polarization: -61.22 SS G_CDS: 0.03 Total: -61.18 kcal
Atomic # 8 Polarization: -12.78 SS G_CDS: -0.58 Total: -13.37 kcal
Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal
Total LS contribution 6.27 Total: 6.27 kcal
Total: -34.52 -10.46 -44.98 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086793529.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.881 kcal
(2) G-P(sol) polarization free energy of solvation -34.520 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.638 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.979 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.098 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds