Wall clock time and date at job start Wed Apr 1 2020 05:00:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53005 * 109.47245 * 2 1
4 4 O 1.42896 * 109.47525 * 180.02562 * 3 2 1
5 5 C 1.35648 * 116.99892 * 179.97438 * 4 3 2
6 6 C 1.39339 * 120.54099 * 359.97438 * 5 4 3
7 7 C 1.38301 * 118.44092 * 180.02562 * 6 5 4
8 8 C 1.38774 * 119.44172 * 0.02562 * 7 6 5
9 9 N 1.31370 * 121.06823 * 359.73099 * 8 7 6
10 10 C 1.32857 * 121.69526 * 0.53067 * 9 8 7
11 11 C 1.47836 * 119.78585 * 179.74893 * 10 9 8
12 12 O 1.21552 * 119.99859 * 179.72983 * 11 10 9
13 13 N 1.34777 * 119.99800 * 359.72801 * 11 10 9
14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10
15 15 C 1.52993 * 109.47551 * 180.02562 * 14 13 11
16 16 H 1.08997 * 110.43663 * 307.54498 * 15 14 13
17 17 C 1.54894 * 110.48476 * 70.22881 * 15 14 13
18 18 C 1.54890 * 102.74958 * 156.62341 * 17 15 14
19 19 C 1.54263 * 104.19462 * 322.05707 * 18 17 15
20 20 H 1.09000 * 110.07417 * 142.91777 * 19 18 17
21 21 N 1.46504 * 110.03219 * 264.32474 * 19 18 17
22 22 C 1.36936 * 120.00248 * 272.16862 * 21 19 18
23 23 H 1.08002 * 119.99736 * 359.97438 * 22 21 19
24 24 C 1.38810 * 119.99705 * 179.97438 * 22 21 19
25 25 N 1.31615 * 120.00518 * 359.97438 * 24 22 21
26 26 Si 1.86802 * 119.99581 * 179.97438 * 24 22 21
27 27 H 1.48506 * 109.47187 * 0.02562 * 26 24 22
28 28 H 1.48503 * 109.47139 * 120.00125 * 26 24 22
29 29 H 1.48498 * 109.47353 * 240.00078 * 26 24 22
30 30 C 1.53871 * 106.59821 * 23.60926 * 19 18 17
31 31 H 1.09001 * 109.46898 * 180.02562 * 1 2 3
32 32 H 1.08997 * 109.47123 * 299.99964 * 1 2 3
33 33 H 1.08997 * 109.46821 * 60.00699 * 1 2 3
34 34 H 1.09003 * 109.47788 * 239.99905 * 2 1 3
35 35 H 1.09003 * 109.47485 * 119.99428 * 2 1 3
36 36 H 1.08995 * 109.46962 * 59.99025 * 3 2 1
37 37 H 1.09003 * 109.46413 * 300.00085 * 3 2 1
38 38 H 1.08000 * 120.78213 * 0.04471 * 6 5 4
39 39 H 1.08001 * 120.28223 * 180.02562 * 7 6 5
40 40 H 1.08004 * 119.46639 * 180.02562 * 8 7 6
41 41 H 0.96999 * 120.00047 * 0.02562 * 13 11 10
42 42 H 1.09000 * 109.47024 * 300.00478 * 14 13 11
43 43 H 1.09004 * 109.46875 * 60.00324 * 14 13 11
44 44 H 1.09002 * 110.75085 * 274.93403 * 17 15 14
45 45 H 1.08991 * 110.75862 * 38.30462 * 17 15 14
46 46 H 1.08995 * 110.48352 * 203.37759 * 18 17 15
47 47 H 1.09004 * 110.60123 * 80.78771 * 18 17 15
48 48 H 0.97001 * 119.99561 * 92.16294 * 21 19 18
49 49 H 0.96998 * 120.00373 * 179.97438 * 25 24 22
50 50 H 1.09004 * 110.03408 * 240.71789 * 30 19 18
51 51 H 1.09003 * 110.03280 * 119.29245 * 30 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 3.4690 1.4426 -0.0006
5 6 4.0847 2.6513 -0.0012
6 6 3.3368 3.8269 -0.0018
7 6 4.0093 5.0354 -0.0030
8 6 5.3971 5.0438 -0.0041
9 7 6.0818 3.9226 0.0013
10 6 5.4809 2.7377 -0.0026
11 6 6.2931 1.5025 -0.0019
12 8 5.7474 0.4163 -0.0004
13 7 7.6386 1.5807 -0.0030
14 6 8.4435 0.3566 -0.0017
15 6 9.9289 0.7230 -0.0027
16 1 10.1492 1.4174 -0.8134
17 6 10.3382 1.3310 1.3619
18 6 11.8640 1.0688 1.4091
19 6 12.0282 -0.3256 0.7702
20 1 12.9381 -0.3578 0.1710
21 7 12.0783 -1.3529 1.8135
22 6 13.2755 -1.6879 2.3877
23 1 14.1828 -1.1950 2.0712
24 6 13.3227 -2.6609 3.3766
25 7 12.2169 -3.2611 3.7628
26 14 14.9560 -3.1183 4.1594
27 1 16.0403 -2.3038 3.5543
28 1 14.8960 -2.8551 5.6197
29 1 15.2300 -4.5591 3.9270
30 6 10.7979 -0.5455 -0.1274
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 -0.3633 0.5137 -0.8900
34 1 1.8934 -0.5138 -0.8900
35 1 1.8934 -0.5137 0.8900
36 1 1.6766 1.9564 0.8899
37 1 1.6766 1.9563 -0.8900
38 1 2.2573 3.7953 -0.0010
39 1 3.4592 5.9648 -0.0030
40 1 5.9227 5.9873 -0.0046
41 1 8.0740 2.4474 -0.0038
42 1 8.2144 -0.2280 0.8892
43 1 8.2132 -0.2305 -0.8908
44 1 10.1290 2.4005 1.3865
45 1 9.8327 0.8185 2.1803
46 1 12.2178 1.0602 2.4400
47 1 12.4003 1.8198 0.8289
48 1 11.2634 -1.7957 2.0976
49 1 12.2500 -3.9413 4.4535
50 1 10.2380 -1.4165 0.2133
51 1 11.1107 -0.6836 -1.1624
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086793529.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:30
Heat of formation + Delta-G solvation = -65.579194 kcal
Electronic energy + Delta-G solvation = -29854.061124 eV
Core-core repulsion = 25752.370617 eV
Total energy + Delta-G solvation = -4101.690507 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.97671 -40.40225 -39.43827 -39.23881 -36.27666 -35.03663 -34.84299 -33.45626
-32.43514 -31.59808 -30.22597 -28.85648 -27.64745 -26.41624 -25.32275 -24.64966
-23.88266 -22.56679 -21.73953 -21.12238 -20.68255 -19.43801 -19.11813 -18.68608
-18.08497 -17.44400 -17.10815 -16.69226 -16.45920 -16.25607 -16.13714 -15.58099
-15.43612 -15.33643 -15.07175 -14.93276 -14.59631 -14.44396 -14.20213 -14.09412
-13.60940 -13.51129 -13.12474 -13.05476 -12.99498 -12.97787 -12.55016 -12.49508
-12.33937 -12.10791 -11.98381 -11.94395 -11.71998 -11.65600 -11.62168 -11.49305
-11.42271 -11.25923 -10.90237 -10.83900 -10.62533 -10.11338 -9.49493 -8.95702
-7.92355 -5.19996 -0.37022 0.21779 1.46268 1.47320 1.57370 1.75559
2.01878 2.12090 2.57285 2.82484 3.20646 3.39514 3.56704 3.66751
3.69597 3.80042 3.85772 3.88656 3.94120 4.03502 4.14485 4.20816
4.23188 4.42971 4.47778 4.49458 4.50833 4.54780 4.59879 4.68843
4.74025 4.79916 4.84321 4.88886 4.95356 5.01025 5.08985 5.11401
5.13786 5.13988 5.23201 5.29502 5.39197 5.45005 5.45799 5.51701
5.59066 5.67008 6.22290 6.31061 6.46067 6.81747 7.21997 7.35280
8.15514 8.36663 9.31686
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014135 B = 0.001966 C = 0.001800
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1980.470725 B =14237.013517 C =15548.221174
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.125 4.125
3 C 0.045 3.955
4 O -0.307 6.307
5 C 0.123 3.877
6 C -0.174 4.174
7 C -0.086 4.086
8 C 0.054 3.946
9 N -0.437 5.437
10 C 0.004 3.996
11 C 0.560 3.440
12 O -0.562 6.562
13 N -0.699 5.699
14 C 0.134 3.866
15 C -0.083 4.083
16 H 0.108 0.892
17 C -0.106 4.106
18 C -0.138 4.138
19 C 0.162 3.838
20 H 0.047 0.953
21 N -0.734 5.734
22 C -0.233 4.233
23 H 0.077 0.923
24 C -0.083 4.083
25 N -0.973 5.973
26 Si 0.972 3.028
27 H -0.264 1.264
28 H -0.296 1.296
29 H -0.295 1.295
30 C -0.116 4.116
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.070 0.930
34 H 0.060 0.940
35 H 0.057 0.943
36 H 0.081 0.919
37 H 0.084 0.916
38 H 0.176 0.824
39 H 0.189 0.811
40 H 0.199 0.801
41 H 0.417 0.583
42 H 0.044 0.956
43 H 0.065 0.935
44 H 0.083 0.917
45 H 0.039 0.961
46 H 0.039 0.961
47 H 0.079 0.921
48 H 0.369 0.631
49 H 0.249 0.751
50 H 0.050 0.950
51 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.985 22.703 -12.418 35.971
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.163 4.163
3 C -0.030 4.030
4 O -0.218 6.218
5 C 0.072 3.928
6 C -0.200 4.200
7 C -0.105 4.105
8 C -0.108 4.108
9 N -0.149 5.149
10 C -0.133 4.133
11 C 0.346 3.654
12 O -0.440 6.440
13 N -0.351 5.351
14 C 0.010 3.990
15 C -0.102 4.102
16 H 0.126 0.874
17 C -0.143 4.143
18 C -0.178 4.178
19 C 0.054 3.946
20 H 0.065 0.935
21 N -0.374 5.374
22 C -0.365 4.365
23 H 0.095 0.905
24 C -0.275 4.275
25 N -0.624 5.624
26 Si 0.802 3.198
27 H -0.188 1.188
28 H -0.223 1.223
29 H -0.222 1.222
30 C -0.155 4.155
31 H 0.085 0.915
32 H 0.086 0.914
33 H 0.089 0.911
34 H 0.079 0.921
35 H 0.076 0.924
36 H 0.099 0.901
37 H 0.102 0.898
38 H 0.193 0.807
39 H 0.207 0.793
40 H 0.216 0.784
41 H 0.255 0.745
42 H 0.062 0.938
43 H 0.083 0.917
44 H 0.101 0.899
45 H 0.057 0.943
46 H 0.058 0.942
47 H 0.098 0.902
48 H 0.201 0.799
49 H 0.057 0.943
50 H 0.069 0.931
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -24.159 21.649 -12.404 34.731
hybrid contribution -0.142 -0.745 1.017 1.268
sum -24.301 20.904 -11.387 34.018
Atomic orbital electron populations
1.21657 0.91942 1.03174 1.03107 1.21493 0.97633 0.94467 1.02734
1.23296 0.76763 0.99875 1.03038 1.86383 1.23084 1.25903 1.86413
1.20280 0.92187 0.86748 0.93608 1.22162 1.02495 0.90886 1.04446
1.22751 0.95379 0.99554 0.92853 1.23441 0.92627 0.96432 0.98327
1.67548 1.40782 0.97583 1.08972 1.20401 0.89147 0.92610 1.11097
1.18147 0.82738 0.87899 0.76624 1.90806 1.72544 1.29465 1.51217
1.45717 1.05120 1.10754 1.73514 1.21342 0.90179 0.86361 1.01076
1.22096 0.91336 0.97761 0.98976 0.87351 1.22423 0.95439 1.00567
0.95894 1.22950 0.96293 0.98211 1.00315 1.21138 0.96369 0.88277
0.88844 0.93455 1.42786 1.06408 1.44414 1.43831 1.19710 0.88057
1.15018 1.13751 0.90511 1.25580 1.00250 1.00389 1.01264 1.69842
1.27749 1.30391 1.34466 0.85078 0.79766 0.77341 0.77642 1.18818
1.22341 1.22244 1.22377 0.95678 0.97149 1.00263 0.91507 0.91381
0.91147 0.92072 0.92410 0.90086 0.89772 0.80716 0.79348 0.78381
0.74509 0.93795 0.91712 0.89857 0.94250 0.94220 0.90210 0.79890
0.94252 0.93146 0.89753
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.29 9.91 71.98 0.71 -0.58 16
2 C -0.13 -1.97 6.30 30.60 0.19 -1.78 16
3 C 0.04 0.66 4.76 71.98 0.34 1.01 16
4 O -0.31 -7.81 8.20 -68.64 -0.56 -8.37 16
5 C 0.12 2.75 6.71 22.93 0.15 2.90 16
6 C -0.17 -2.10 9.13 22.55 0.21 -1.89 16
7 C -0.09 -0.66 10.10 22.41 0.23 -0.43 16
8 C 0.05 0.64 11.17 84.89 0.95 1.58 16
9 N -0.44 -8.93 9.54 -184.62 -1.76 -10.69 16
10 C 0.00 0.10 6.76 41.93 0.28 0.38 16
11 C 0.56 18.04 7.80 86.78 0.68 18.72 16
12 O -0.56 -22.36 15.14 17.11 0.26 -22.10 16
13 N -0.70 -19.44 5.44 -466.00 -2.53 -21.98 16
14 C 0.13 4.03 4.96 86.38 0.43 4.45 16
15 C -0.08 -2.26 2.89 -9.72 -0.03 -2.28 16
16 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16
17 C -0.11 -3.20 6.19 31.89 0.20 -3.00 16
18 C -0.14 -4.80 6.54 31.67 0.21 -4.59 16
19 C 0.16 6.47 3.55 45.71 0.16 6.64 16
20 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16
21 N -0.73 -38.33 5.08 -319.52 -1.62 -39.96 16
22 C -0.23 -13.32 9.96 84.03 0.84 -12.48 16
23 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16
24 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16
25 N -0.97 -62.08 13.06 21.65 0.28 -61.80 16
26 Si 0.97 47.70 29.55 68.60 2.03 49.72 16
27 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16
28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16
29 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16
30 C -0.12 -3.83 6.14 31.32 0.19 -3.64 16
31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16
32 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16
33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16
34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16
35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
36 H 0.08 0.86 7.70 -2.39 -0.02 0.84 16
37 H 0.08 0.84 7.70 -2.39 -0.02 0.82 16
38 H 0.18 0.94 6.46 -2.91 -0.02 0.92 16
39 H 0.19 -0.26 8.06 -2.91 -0.02 -0.29 16
40 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16
41 H 0.42 9.73 7.76 -92.71 -0.72 9.01 16
42 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16
43 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16
44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
45 H 0.04 1.42 7.96 -2.39 -0.02 1.40 16
46 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16
47 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16
48 H 0.37 21.07 7.52 -92.71 -0.70 20.37 16
49 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16
50 H 0.05 1.91 7.31 -2.38 -0.02 1.89 16
51 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16
Total: -1.00 -81.19 415.92 1.82 -79.37
By element:
Atomic # 1 Polarization: 35.77 SS G_CDS: -0.48 Total: 35.29 kcal
Atomic # 6 Polarization: -5.69 SS G_CDS: 6.21 Total: 0.52 kcal
Atomic # 7 Polarization: -128.79 SS G_CDS: -5.63 Total: -134.42 kcal
Atomic # 8 Polarization: -30.17 SS G_CDS: -0.30 Total: -30.48 kcal
Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.72 kcal
Total: -81.19 1.82 -79.37 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086793529.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.791 kcal
(2) G-P(sol) polarization free energy of solvation -81.188 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.579 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds