Wall clock time and date at job start Wed Apr 1 2020 04:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46615 * 2 1 4 4 O 1.42896 * 109.47091 * 119.99800 * 2 1 3 5 5 C 1.35421 * 116.99888 * 90.00116 * 4 2 1 6 6 N 1.32234 * 119.80378 * 0.02562 * 5 4 2 7 7 C 1.31884 * 121.80257 * 179.97438 * 6 5 4 8 8 C 1.38356 * 121.18462 * 0.02562 * 7 6 5 9 9 C 1.38330 * 119.45920 * 359.97438 * 8 7 6 10 10 C 1.39990 * 118.34907 * 0.02562 * 9 8 7 11 11 C 1.47524 * 120.59541 * 180.02562 * 10 9 8 12 12 O 1.21597 * 119.99992 * 180.02562 * 11 10 9 13 13 N 1.34781 * 120.00358 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00302 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47198 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.01527 * 305.06403 * 15 14 13 17 17 C 1.53877 * 110.02952 * 66.45601 * 15 14 13 18 18 C 1.54263 * 106.59878 * 119.28503 * 17 15 14 19 19 C 1.54890 * 104.19432 * 23.60694 * 18 17 15 20 20 H 1.08997 * 110.75543 * 80.37634 * 19 18 17 21 21 N 1.46509 * 110.75392 * 203.55700 * 19 18 17 22 22 C 1.36933 * 119.99617 * 273.54517 * 21 19 18 23 23 H 1.07998 * 120.00982 * 0.02562 * 22 21 19 24 24 C 1.38818 * 119.99375 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00149 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99836 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47185 * 60.00297 * 26 24 22 28 28 H 1.48498 * 109.47190 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47089 * 299.99992 * 26 24 22 30 30 C 1.54262 * 110.03041 * 183.61879 * 15 14 13 31 31 H 1.09000 * 109.47683 * 300.00152 * 1 2 3 32 32 H 1.08999 * 109.47522 * 60.00460 * 1 2 3 33 33 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46958 * 239.99994 * 2 1 3 35 35 H 1.09004 * 109.46721 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47063 * 299.99499 * 3 2 1 37 37 H 1.08995 * 109.47567 * 59.99891 * 3 2 1 38 38 H 1.07995 * 119.40524 * 180.02562 * 7 6 5 39 39 H 1.08002 * 120.26882 * 179.97438 * 8 7 6 40 40 H 1.08001 * 120.82649 * 179.97438 * 9 8 7 41 41 H 0.97005 * 119.99727 * 359.97438 * 13 11 10 42 42 H 1.09004 * 109.47098 * 300.00153 * 14 13 11 43 43 H 1.09005 * 109.47166 * 59.99913 * 14 13 11 44 44 H 1.08999 * 110.02647 * 238.57163 * 17 15 14 45 45 H 1.08998 * 110.03610 * 359.97438 * 17 15 14 46 46 H 1.09002 * 110.48583 * 142.28306 * 18 17 15 47 47 H 1.09000 * 110.48966 * 264.79636 * 18 17 15 48 48 H 0.96998 * 119.99723 * 93.55052 * 21 19 18 49 49 H 0.96994 * 119.99813 * 180.02562 * 25 24 22 50 50 H 1.08995 * 110.49250 * 335.78753 * 30 15 14 51 51 H 1.09004 * 110.48620 * 98.42845 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2112 -2.0084 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1567 -3.9231 -0.2217 8 6 2.6148 -4.7006 0.8270 9 6 2.8829 -4.1071 2.0474 10 6 2.6778 -2.7283 2.1754 11 6 2.9484 -2.0444 3.4542 12 8 2.7660 -0.8463 3.5535 13 7 3.3979 -2.7475 4.5126 14 6 3.6672 -2.0683 5.7823 15 6 4.1639 -3.0869 6.8103 16 1 3.4479 -3.9035 6.9025 17 6 5.5378 -3.6357 6.3870 18 6 6.5259 -3.2655 7.5123 19 6 5.6282 -3.0830 8.7613 20 1 5.3783 -4.0482 9.2017 21 7 6.2805 -2.2179 9.7475 22 6 7.1454 -2.7547 10.6634 23 1 7.3472 -3.8156 10.6586 24 6 7.7638 -1.9348 11.5974 25 7 7.5183 -0.6417 11.6030 26 14 8.9442 -2.6669 12.8464 27 1 10.0745 -3.3182 12.1368 28 1 9.4659 -1.5894 13.7252 29 1 8.2303 -3.6750 13.6707 30 6 4.3652 -2.4022 8.1779 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6765 1.9564 0.8899 38 1 1.9480 -4.3872 -1.1743 39 1 2.7617 -5.7623 0.6939 40 1 3.2409 -4.6931 2.8810 41 1 3.5431 -3.7034 4.4335 42 1 4.4295 -1.3040 5.6310 43 1 2.7518 -1.6014 6.1460 44 1 5.4886 -4.7188 6.2746 45 1 5.8504 -3.1768 5.4491 46 1 7.2420 -4.0717 7.6717 47 1 7.0449 -2.3371 7.2741 48 1 6.0995 -1.2650 9.7516 49 1 7.9507 -0.0689 12.2555 50 1 4.5335 -1.3332 8.0483 51 1 3.5045 -2.5784 8.8231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086892364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:05 Heat of formation + Delta-G solvation = -39.780662 kcal Electronic energy + Delta-G solvation = -29987.858671 eV Core-core repulsion = 25887.286873 eV Total energy + Delta-G solvation = -4100.571799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27303 -39.49199 -38.53562 -38.00473 -34.93137 -33.59598 -33.53413 -32.85172 -30.90698 -30.47672 -28.94853 -27.55493 -27.28969 -25.25510 -24.46068 -23.49438 -23.01483 -21.62738 -20.79593 -19.78692 -19.42443 -18.86064 -17.76671 -17.26826 -17.06241 -16.20764 -15.88830 -15.59573 -15.45996 -14.97584 -14.82359 -14.68849 -14.52793 -14.09286 -13.85806 -13.53207 -13.44825 -13.24808 -12.86248 -12.79985 -12.72123 -12.62585 -12.56209 -12.24887 -12.13998 -11.84194 -11.25386 -11.12282 -11.08921 -10.86115 -10.77058 -10.58336 -10.54758 -10.36402 -10.34230 -10.27020 -10.15724 -9.90420 -9.72183 -9.62606 -9.13118 -8.86118 -8.83069 -6.92620 -5.74709 -3.03321 0.31358 0.83665 2.66400 2.72230 3.01331 3.44729 3.49051 3.50289 3.51077 3.83218 4.28150 4.40263 4.53394 4.59650 4.60252 4.67769 4.70886 4.81203 4.91940 4.94375 5.04927 5.08912 5.26233 5.37379 5.42995 5.47504 5.52143 5.54332 5.56115 5.60014 5.70713 5.75747 5.83172 5.88644 5.90130 5.97216 5.98244 6.03995 6.07896 6.23650 6.34123 6.40056 6.47778 6.58370 6.73414 6.88198 6.96910 7.13411 7.31178 7.45605 7.71450 8.15927 8.44242 9.54881 10.14059 10.48135 11.47894 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020036 B = 0.001819 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.143924 B =15386.096006 C =16344.498592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 C -0.150 4.150 4 O -0.263 6.263 5 C 0.376 3.624 6 N -0.547 5.547 7 C 0.165 3.835 8 C -0.223 4.223 9 C -0.008 4.008 10 C -0.210 4.210 11 C 0.559 3.441 12 O -0.514 6.514 13 N -0.725 5.725 14 C 0.128 3.872 15 C -0.100 4.100 16 H 0.073 0.927 17 C -0.121 4.121 18 C -0.143 4.143 19 C 0.177 3.823 20 H 0.052 0.948 21 N -0.721 5.721 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.121 4.121 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.396 0.604 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.070 0.930 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.463 -7.285 -28.128 32.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.019 3.981 3 C -0.207 4.207 4 O -0.167 6.167 5 C 0.196 3.804 6 N -0.271 5.271 7 C 0.008 3.992 8 C -0.243 4.243 9 C -0.034 4.034 10 C -0.217 4.217 11 C 0.345 3.655 12 O -0.390 6.390 13 N -0.378 5.378 14 C 0.006 3.994 15 C -0.120 4.120 16 H 0.092 0.908 17 C -0.159 4.159 18 C -0.184 4.184 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.160 4.160 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.181 0.819 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.231 0.769 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.756 -5.739 -28.358 32.478 hybrid contribution 0.988 -1.194 1.091 1.895 sum -13.768 -6.934 -27.267 31.323 Atomic orbital electron populations 1.22211 0.94774 1.02700 1.02791 1.22459 0.94544 0.93267 0.87826 1.21885 1.02137 0.93640 1.03040 1.86606 1.77894 1.14638 1.37582 1.19840 0.87237 0.85255 0.88072 1.67434 1.22901 1.12744 1.23998 1.22671 0.90003 0.87659 0.98836 1.21926 1.06223 1.02143 0.94020 1.21667 0.91586 0.92194 0.97972 1.20089 1.12224 0.94279 0.95082 1.17765 0.77894 0.86872 0.82951 1.90855 1.50870 1.13810 1.83458 1.45933 1.67981 1.11910 1.11940 1.21572 1.01003 0.95241 0.81626 1.21962 0.97451 0.97433 0.95131 0.90834 1.22218 0.94828 0.99713 0.99145 1.23067 0.98066 1.01126 0.96145 1.21149 0.89639 0.93919 0.88639 0.92991 1.42376 1.51809 1.06928 1.34987 1.19196 1.17491 0.92811 1.07541 0.91271 1.24755 1.00939 0.95537 0.99825 1.69650 1.47112 1.02934 1.38416 0.86275 0.80978 0.77696 0.81270 1.21318 1.21719 1.21306 1.22564 0.99377 1.00407 0.93683 0.91725 0.91059 0.92217 0.89401 0.91758 0.90577 0.91260 0.81900 0.83834 0.83791 0.76935 0.91001 0.91397 0.92478 0.92365 0.92639 0.91808 0.78181 0.93461 0.91137 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.53 37.16 0.35 -1.04 16 2 C 0.08 0.73 3.11 -26.73 -0.08 0.65 16 3 C -0.15 -1.26 9.56 37.16 0.36 -0.90 16 4 O -0.26 -3.45 7.86 -39.73 -0.31 -3.76 16 5 C 0.38 4.46 7.47 -16.61 -0.12 4.34 16 6 N -0.55 -5.32 8.64 -12.98 -0.11 -5.43 16 7 C 0.17 1.09 11.17 -17.49 -0.20 0.90 16 8 C -0.22 -1.26 10.09 -39.50 -0.40 -1.66 16 9 C -0.01 -0.06 9.64 -38.89 -0.37 -0.43 16 10 C -0.21 -2.32 5.90 -104.69 -0.62 -2.94 16 11 C 0.56 7.44 7.77 -12.47 -0.10 7.35 16 12 O -0.51 -8.91 15.19 -16.49 -0.25 -9.16 16 13 N -0.72 -7.89 5.25 -61.35 -0.32 -8.21 16 14 C 0.13 1.62 4.70 -4.04 -0.02 1.60 16 15 C -0.10 -1.24 2.98 -89.50 -0.27 -1.51 16 16 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.12 -1.54 6.13 -25.61 -0.16 -1.70 16 18 C -0.14 -2.47 6.51 -25.07 -0.16 -2.64 16 19 C 0.18 3.43 3.53 -65.93 -0.23 3.20 16 20 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 21 N -0.72 -18.04 5.26 -51.50 -0.27 -18.31 16 22 C -0.24 -6.64 9.98 -15.06 -0.15 -6.79 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 26 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 C -0.12 -1.92 5.97 -25.08 -0.15 -2.07 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.82 6.98 -51.93 -0.36 0.46 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.16 0.53 8.06 -52.49 -0.42 0.10 16 39 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.14 0.63 6.52 -52.49 -0.34 0.29 16 41 H 0.40 3.12 6.41 -40.82 -0.26 2.86 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.72 7.58 -51.93 -0.39 0.33 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.38 10.26 7.73 -40.82 -0.32 9.95 16 49 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 50 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 51 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 414.85 15.07 6.25 6.25 Total: -1.00 -34.66 414.85 -10.12 -44.78 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -8.39 Total: 8.21 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.42 Total: -4.16 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.02 Total: -59.59 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.56 Total: -12.92 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.66 -10.12 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086892364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.999 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds