Wall clock time and date at job start Wed Apr 1 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46615 * 2 1 4 4 O 1.42896 * 109.47091 * 119.99800 * 2 1 3 5 5 C 1.35421 * 116.99888 * 90.00116 * 4 2 1 6 6 N 1.32234 * 119.80378 * 0.02562 * 5 4 2 7 7 C 1.31884 * 121.80257 * 179.97438 * 6 5 4 8 8 C 1.38356 * 121.18462 * 0.02562 * 7 6 5 9 9 C 1.38330 * 119.45920 * 359.97438 * 8 7 6 10 10 C 1.39990 * 118.34907 * 0.02562 * 9 8 7 11 11 C 1.47524 * 120.59541 * 180.02562 * 10 9 8 12 12 O 1.21597 * 119.99992 * 180.02562 * 11 10 9 13 13 N 1.34781 * 120.00358 * 0.02562 * 11 10 9 14 14 C 1.46495 * 120.00302 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.47198 * 180.02562 * 14 13 11 16 16 H 1.08996 * 110.01527 * 305.06403 * 15 14 13 17 17 C 1.53877 * 110.02952 * 66.45601 * 15 14 13 18 18 C 1.54263 * 106.59878 * 119.28503 * 17 15 14 19 19 C 1.54890 * 104.19432 * 23.60694 * 18 17 15 20 20 H 1.08997 * 110.75543 * 80.37634 * 19 18 17 21 21 N 1.46509 * 110.75392 * 203.55700 * 19 18 17 22 22 C 1.36933 * 119.99617 * 273.54517 * 21 19 18 23 23 H 1.07998 * 120.00982 * 0.02562 * 22 21 19 24 24 C 1.38818 * 119.99375 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00149 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99836 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47185 * 60.00297 * 26 24 22 28 28 H 1.48498 * 109.47190 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47089 * 299.99992 * 26 24 22 30 30 C 1.54262 * 110.03041 * 183.61879 * 15 14 13 31 31 H 1.09000 * 109.47683 * 300.00152 * 1 2 3 32 32 H 1.08999 * 109.47522 * 60.00460 * 1 2 3 33 33 H 1.09003 * 109.46977 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46958 * 239.99994 * 2 1 3 35 35 H 1.09004 * 109.46721 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47063 * 299.99499 * 3 2 1 37 37 H 1.08995 * 109.47567 * 59.99891 * 3 2 1 38 38 H 1.07995 * 119.40524 * 180.02562 * 7 6 5 39 39 H 1.08002 * 120.26882 * 179.97438 * 8 7 6 40 40 H 1.08001 * 120.82649 * 179.97438 * 9 8 7 41 41 H 0.97005 * 119.99727 * 359.97438 * 13 11 10 42 42 H 1.09004 * 109.47098 * 300.00153 * 14 13 11 43 43 H 1.09005 * 109.47166 * 59.99913 * 14 13 11 44 44 H 1.08999 * 110.02647 * 238.57163 * 17 15 14 45 45 H 1.08998 * 110.03610 * 359.97438 * 17 15 14 46 46 H 1.09002 * 110.48583 * 142.28306 * 18 17 15 47 47 H 1.09000 * 110.48966 * 264.79636 * 18 17 15 48 48 H 0.96998 * 119.99723 * 93.55052 * 21 19 18 49 49 H 0.96994 * 119.99813 * 180.02562 * 25 24 22 50 50 H 1.08995 * 110.49250 * 335.78753 * 30 15 14 51 51 H 1.09004 * 110.48620 * 98.42845 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2112 -2.0084 1.0655 6 7 1.9704 -2.6253 -0.0791 7 6 2.1567 -3.9231 -0.2217 8 6 2.6148 -4.7006 0.8270 9 6 2.8829 -4.1071 2.0474 10 6 2.6778 -2.7283 2.1754 11 6 2.9484 -2.0444 3.4542 12 8 2.7660 -0.8463 3.5535 13 7 3.3979 -2.7475 4.5126 14 6 3.6672 -2.0683 5.7823 15 6 4.1639 -3.0869 6.8103 16 1 3.4479 -3.9035 6.9025 17 6 5.5378 -3.6357 6.3870 18 6 6.5259 -3.2655 7.5123 19 6 5.6282 -3.0830 8.7613 20 1 5.3783 -4.0482 9.2017 21 7 6.2805 -2.2179 9.7475 22 6 7.1454 -2.7547 10.6634 23 1 7.3472 -3.8156 10.6586 24 6 7.7638 -1.9348 11.5974 25 7 7.5183 -0.6417 11.6030 26 14 8.9442 -2.6669 12.8464 27 1 10.0745 -3.3182 12.1368 28 1 9.4659 -1.5894 13.7252 29 1 8.2303 -3.6750 13.6707 30 6 4.3652 -2.4022 8.1779 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9563 -0.8900 37 1 1.6765 1.9564 0.8899 38 1 1.9480 -4.3872 -1.1743 39 1 2.7617 -5.7623 0.6939 40 1 3.2409 -4.6931 2.8810 41 1 3.5431 -3.7034 4.4335 42 1 4.4295 -1.3040 5.6310 43 1 2.7518 -1.6014 6.1460 44 1 5.4886 -4.7188 6.2746 45 1 5.8504 -3.1768 5.4491 46 1 7.2420 -4.0717 7.6717 47 1 7.0449 -2.3371 7.2741 48 1 6.0995 -1.2650 9.7516 49 1 7.9507 -0.0689 12.2555 50 1 4.5335 -1.3332 8.0483 51 1 3.5045 -2.5784 8.8231 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086892364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:04 Heat of formation + Delta-G solvation = -63.176460 kcal Electronic energy + Delta-G solvation = -29988.873189 eV Core-core repulsion = 25887.286873 eV Total energy + Delta-G solvation = -4101.586317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.98086 -40.48895 -39.36364 -39.14202 -36.32897 -35.07438 -34.24694 -33.71962 -32.48271 -31.35977 -30.17104 -28.78491 -28.22029 -26.31954 -25.37099 -24.90621 -24.17358 -22.36462 -21.75852 -21.09572 -20.66403 -19.61906 -19.14640 -18.53790 -17.98025 -17.13960 -16.83496 -16.72149 -16.51763 -16.06619 -15.88630 -15.66651 -15.42924 -15.37633 -15.09110 -14.78192 -14.32033 -14.21496 -14.09204 -13.89013 -13.58667 -13.40349 -13.32621 -13.28041 -13.22122 -12.92699 -12.89403 -12.66669 -12.37519 -12.14307 -11.96781 -11.93341 -11.78325 -11.76859 -11.64077 -11.51753 -11.25678 -11.14132 -11.01504 -10.87459 -10.55118 -10.12460 -9.50578 -8.97182 -7.92908 -5.21172 -0.32563 0.26553 1.46828 1.50158 1.56191 1.87766 2.00362 2.10289 2.57404 2.82172 3.24597 3.39076 3.63739 3.71943 3.78783 3.79952 3.82110 3.91461 3.99540 4.00481 4.21008 4.22305 4.31241 4.40172 4.48826 4.54163 4.63772 4.64361 4.66312 4.78139 4.78800 4.80304 4.80681 4.84889 4.90284 4.93791 5.09511 5.10469 5.14046 5.17474 5.20332 5.21525 5.36039 5.46221 5.48919 5.51017 5.56955 5.65718 6.28449 6.29652 6.53308 6.78007 7.24387 7.34579 8.13773 8.35122 9.30715 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020036 B = 0.001819 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.143924 B =15386.096006 C =16344.498592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.069 3.931 3 C -0.147 4.147 4 O -0.296 6.296 5 C 0.350 3.650 6 N -0.561 5.561 7 C 0.162 3.838 8 C -0.207 4.207 9 C -0.002 4.002 10 C -0.239 4.239 11 C 0.556 3.444 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.136 3.864 15 C -0.082 4.082 16 H 0.107 0.893 17 C -0.108 4.108 18 C -0.139 4.139 19 C 0.164 3.836 20 H 0.055 0.945 21 N -0.737 5.737 22 C -0.237 4.237 23 H 0.077 0.923 24 C -0.082 4.082 25 N -0.973 5.973 26 Si 0.974 3.026 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.276 1.276 30 C -0.117 4.117 31 H 0.051 0.949 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.200 0.800 39 H 0.185 0.815 40 H 0.176 0.824 41 H 0.414 0.586 42 H 0.047 0.953 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.035 0.965 48 H 0.370 0.630 49 H 0.250 0.750 50 H 0.051 0.949 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 -11.274 -30.183 35.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 C -0.204 4.204 4 O -0.202 6.202 5 C 0.170 3.830 6 N -0.285 5.285 7 C 0.006 3.994 8 C -0.227 4.227 9 C -0.028 4.028 10 C -0.245 4.245 11 C 0.344 3.656 12 O -0.448 6.448 13 N -0.361 5.361 14 C 0.012 3.988 15 C -0.101 4.101 16 H 0.125 0.875 17 C -0.146 4.146 18 C -0.180 4.180 19 C 0.056 3.944 20 H 0.073 0.927 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.095 0.905 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.803 3.197 27 H -0.204 1.204 28 H -0.225 1.225 29 H -0.202 1.202 30 C -0.156 4.156 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.216 0.784 39 H 0.202 0.798 40 H 0.193 0.807 41 H 0.253 0.747 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.339 -9.828 -30.451 35.484 hybrid contribution 1.129 -0.063 1.608 1.966 sum -14.210 -9.891 -28.843 33.640 Atomic orbital electron populations 1.22152 0.93909 1.02294 1.03314 1.22639 0.95290 0.93489 0.87262 1.21902 1.01477 0.93317 1.03676 1.86569 1.78549 1.15959 1.39098 1.20110 0.88564 0.85063 0.89222 1.67473 1.23472 1.14392 1.23201 1.23447 0.88523 0.86703 1.00749 1.22393 1.03780 1.03879 0.92636 1.22067 0.90447 0.90491 0.99764 1.20065 1.14713 0.95986 0.93742 1.18226 0.76952 0.86409 0.84036 1.90823 1.53305 1.16216 1.84425 1.45690 1.67081 1.12640 1.10702 1.21333 0.99893 0.95025 0.82538 1.21831 0.98166 0.97622 0.92519 0.87480 1.22152 0.93121 1.01920 0.97373 1.22898 0.98512 0.99737 0.96823 1.21469 0.91211 0.93415 0.88320 0.92671 1.42623 1.52064 1.06924 1.36006 1.19619 1.16854 0.93153 1.07291 0.90463 1.25603 1.03408 0.95994 1.02373 1.69824 1.48794 1.04298 1.39451 0.85206 0.78981 0.76780 0.78783 1.20417 1.22457 1.20219 1.22475 0.97859 0.99403 0.95834 0.92943 0.88667 0.93008 0.89162 0.92763 0.87801 0.92650 0.78369 0.79762 0.80709 0.74748 0.93435 0.92263 0.89007 0.91632 0.93000 0.94590 0.79816 0.94174 0.92979 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.53 71.98 0.69 -2.02 16 2 C 0.07 1.40 3.11 30.60 0.10 1.50 16 3 C -0.15 -2.59 9.56 71.98 0.69 -1.90 16 4 O -0.30 -8.26 7.86 -66.34 -0.52 -8.79 16 5 C 0.35 8.36 7.47 85.13 0.64 9.00 16 6 N -0.56 -10.27 8.64 -308.01 -2.66 -12.93 16 7 C 0.16 1.61 11.17 84.71 0.95 2.55 16 8 C -0.21 -1.40 10.09 22.32 0.23 -1.17 16 9 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 10 C -0.24 -5.07 5.90 -19.91 -0.12 -5.19 16 11 C 0.56 14.88 7.77 86.69 0.67 15.55 16 12 O -0.57 -20.89 15.19 16.80 0.26 -20.64 16 13 N -0.71 -14.26 5.25 -466.26 -2.45 -16.71 16 14 C 0.14 3.34 4.70 86.38 0.41 3.74 16 15 C -0.08 -1.83 2.98 -10.07 -0.03 -1.86 16 16 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 17 C -0.11 -2.43 6.13 31.32 0.19 -2.24 16 18 C -0.14 -4.70 6.51 31.67 0.21 -4.49 16 19 C 0.16 6.30 3.53 46.28 0.16 6.47 16 20 H 0.06 2.09 8.12 -2.39 -0.02 2.07 16 21 N -0.74 -37.72 5.26 -316.84 -1.67 -39.38 16 22 C -0.24 -13.27 9.98 84.04 0.84 -12.44 16 23 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 25 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 26 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 27 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 29 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 30 C -0.12 -3.64 5.97 31.67 0.19 -3.45 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.72 6.98 -2.39 -0.02 1.70 16 35 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.20 0.40 8.06 -2.91 -0.02 0.37 16 39 H 0.19 -0.22 8.06 -2.91 -0.02 -0.24 16 40 H 0.18 0.66 6.52 -2.91 -0.02 0.64 16 41 H 0.41 5.01 6.41 -92.70 -0.59 4.41 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.06 1.44 7.58 -2.39 -0.02 1.42 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.37 20.64 7.73 -92.71 -0.72 19.93 16 49 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 50 H 0.05 1.82 7.74 -2.39 -0.02 1.80 16 51 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -81.37 414.85 1.38 -79.99 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: -0.37 Total: 30.49 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: 6.48 Total: -0.07 kcal Atomic # 7 Polarization: -123.17 SS G_CDS: -6.49 Total: -129.66 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.27 Total: -29.42 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -81.37 1.38 -79.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086892364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.809 kcal (2) G-P(sol) polarization free energy of solvation -81.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds