Wall clock time and date at job start Wed Apr 1 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 O 1.42894 * 109.46783 * 179.97438 * 3 2 1 5 5 C 1.35426 * 116.99738 * 180.02562 * 4 3 2 6 6 N 1.32235 * 119.80249 * 359.97360 * 5 4 3 7 7 C 1.31877 * 121.80131 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.40796 * 180.02562 * 7 6 5 9 9 C 1.38354 * 121.18679 * 359.72201 * 7 6 5 10 10 C 1.38336 * 119.45931 * 0.56297 * 9 7 6 11 11 C 1.39985 * 118.34632 * 359.44873 * 10 9 7 12 12 C 1.47520 * 120.59932 * 180.25484 * 11 10 9 13 13 O 1.21592 * 120.00597 * 179.97438 * 12 11 10 14 14 N 1.34782 * 120.00076 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00413 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53788 * 113.61240 * 274.13349 * 16 15 14 18 18 C 1.53950 * 87.02088 * 220.04846 * 17 16 15 19 19 N 1.46504 * 113.53914 * 270.81156 * 18 17 16 20 20 C 1.36932 * 120.00026 * 252.50097 * 19 18 17 21 21 H 1.08002 * 120.00137 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00372 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99445 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00642 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47183 * 89.99656 * 24 22 20 26 26 H 1.48493 * 109.47432 * 210.00019 * 24 22 20 27 27 H 1.48508 * 109.46734 * 329.99732 * 24 22 20 28 28 C 1.53779 * 87.11257 * 25.36133 * 18 17 16 29 29 H 1.09008 * 109.46735 * 59.99851 * 1 2 3 30 30 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47290 * 300.00328 * 1 2 3 32 32 H 1.08993 * 109.46830 * 240.00101 * 2 1 3 33 33 H 1.08995 * 109.46922 * 119.99941 * 2 1 3 34 34 H 1.08996 * 109.46950 * 59.99917 * 3 2 1 35 35 H 1.08997 * 109.46940 * 300.00192 * 3 2 1 36 36 H 1.09009 * 109.46906 * 90.00151 * 8 7 6 37 37 H 1.08997 * 109.47681 * 209.99852 * 8 7 6 38 38 H 1.09006 * 109.47066 * 330.00504 * 8 7 6 39 39 H 1.08001 * 120.27158 * 180.29150 * 9 7 6 40 40 H 1.08002 * 120.83060 * 179.73053 * 10 9 7 41 41 H 0.97001 * 119.99536 * 0.02562 * 14 12 11 42 42 H 1.09006 * 109.47051 * 299.99957 * 15 14 12 43 43 H 1.09001 * 109.47219 * 59.99777 * 15 14 12 44 44 H 1.08994 * 112.85157 * 45.33101 * 16 15 14 45 45 H 1.09002 * 113.60977 * 334.57009 * 17 16 15 46 46 H 1.08998 * 113.61173 * 105.46926 * 17 16 15 47 47 H 1.09001 * 113.74323 * 139.94625 * 18 17 16 48 48 H 0.96997 * 119.99559 * 72.49413 * 19 18 17 49 49 H 0.97003 * 119.99919 * 180.02562 * 23 22 20 50 50 H 1.08991 * 113.61802 * 220.08959 * 28 18 17 51 51 H 1.09003 * 113.61442 * 89.18774 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0838 2.6492 0.0012 6 7 3.3597 3.7557 0.0007 7 6 3.9171 4.9509 0.0008 8 6 3.0400 6.1764 0.0008 9 6 5.2926 5.1000 0.0071 10 6 6.0988 3.9758 0.0017 11 6 5.4850 2.7177 0.0017 12 6 6.2969 1.4861 0.0017 13 8 5.7525 0.3989 0.0022 14 7 7.6424 1.5659 0.0022 15 6 8.4488 0.3428 0.0027 16 6 9.9338 0.7110 0.0038 17 6 10.5083 0.9579 -1.4012 18 6 11.7704 0.2139 -0.9283 19 7 12.7695 1.0901 -0.3117 20 6 13.9270 1.3860 -0.9809 21 1 14.1035 0.9730 -1.9631 22 6 14.8740 2.2157 -0.3965 23 7 14.6591 2.7186 0.8008 24 14 16.4533 2.6188 -1.3090 25 1 16.2527 3.8398 -2.1300 26 1 17.5445 2.8543 -0.3299 27 1 16.8180 1.4824 -2.1928 28 6 10.8701 -0.5058 0.0898 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 2.8285 6.4718 1.0285 37 1 3.5522 6.9899 -0.5129 38 1 2.1048 5.9538 -0.5131 39 1 5.7333 6.0860 0.0118 40 1 7.1750 4.0665 0.0021 41 1 8.0767 2.4332 0.0029 42 1 8.2194 -0.2432 0.8928 43 1 8.2201 -0.2436 -0.8872 44 1 10.1741 1.4982 0.7184 45 1 9.9661 0.4392 -2.1918 46 1 10.6789 2.0111 -1.6242 47 1 12.1963 -0.4499 -1.6806 48 1 12.6111 1.4608 0.5706 49 1 15.3207 3.2988 1.2091 50 1 11.3325 -0.6326 1.0686 51 1 10.4272 -1.4255 -0.2926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091302928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:16 Heat of formation + Delta-G solvation = -19.224447 kcal Electronic energy + Delta-G solvation = -29697.923765 eV Core-core repulsion = 25598.243350 eV Total energy + Delta-G solvation = -4099.680415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.19404 -39.42167 -38.48658 -38.32751 -34.68235 -34.28428 -33.55176 -32.96035 -31.89472 -30.19116 -28.69425 -27.42469 -26.39951 -25.05909 -23.87332 -23.33306 -23.22241 -21.86493 -21.63704 -20.57887 -18.73015 -18.40406 -17.73597 -17.16414 -17.01254 -16.71937 -15.61331 -15.37002 -15.08702 -14.89524 -14.75267 -14.69293 -14.51672 -14.08773 -14.00338 -13.88067 -13.26455 -13.22937 -13.10644 -12.89080 -12.62824 -12.59312 -12.54719 -12.36655 -12.22646 -11.91749 -11.62700 -11.38955 -11.34410 -11.05323 -10.85515 -10.84554 -10.49030 -10.30952 -10.19325 -10.18583 -10.02010 -9.70638 -9.69540 -9.43854 -8.99407 -8.89651 -8.66330 -7.01713 -5.82654 -3.11548 0.40251 0.95776 2.71030 2.79173 3.14859 3.40316 3.45942 3.47460 3.59054 3.78699 4.31165 4.51495 4.54166 4.57018 4.63724 4.68027 4.81150 4.95473 5.04395 5.07126 5.11229 5.14686 5.14859 5.16340 5.24731 5.27752 5.33297 5.44044 5.54523 5.56408 5.63603 5.65181 5.70783 5.72642 5.78674 5.87743 5.89537 5.97760 6.08235 6.11769 6.21997 6.37239 6.45168 6.59498 6.73719 6.90105 7.02216 7.03683 7.43513 7.58100 7.67432 8.26785 8.36599 9.47310 10.04962 10.39281 11.39741 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.001950 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.329976 B =14353.233228 C =15918.813108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.066 3.934 4 O -0.268 6.268 5 C 0.379 3.621 6 N -0.548 5.548 7 C 0.191 3.809 8 C -0.108 4.108 9 C -0.220 4.220 10 C -0.004 4.004 11 C -0.216 4.216 12 C 0.561 3.439 13 O -0.522 6.522 14 N -0.722 5.722 15 C 0.133 3.867 16 C -0.120 4.120 17 C -0.168 4.168 18 C 0.167 3.833 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.281 1.281 28 C -0.147 4.147 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.399 0.601 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.068 0.932 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.837 3.380 -0.798 28.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.162 4.162 3 C -0.010 4.010 4 O -0.173 6.173 5 C 0.199 3.801 6 N -0.273 5.273 7 C 0.054 3.946 8 C -0.166 4.166 9 C -0.240 4.240 10 C -0.030 4.030 11 C -0.222 4.222 12 C 0.347 3.653 13 O -0.398 6.398 14 N -0.374 5.374 15 C 0.010 3.990 16 C -0.139 4.139 17 C -0.209 4.209 18 C 0.055 3.945 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.187 4.187 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.234 0.766 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.837 2.197 -0.901 28.935 hybrid contribution 1.763 1.169 -0.110 2.119 sum -27.074 3.367 -1.011 27.301 Atomic orbital electron populations 1.21673 0.94292 1.02380 1.02091 1.21504 0.95820 0.94926 1.03994 1.22777 0.77693 0.98247 1.02264 1.86518 1.22173 1.23066 1.85511 1.19746 0.88015 0.84824 0.87545 1.67286 1.40305 0.98211 1.21547 1.21182 0.92193 0.91967 0.89304 1.20827 0.99365 0.92791 1.03588 1.21754 0.93796 1.00105 1.08327 1.21697 1.00832 0.90465 0.89974 1.20045 0.91579 0.95126 1.15435 1.17754 0.82089 0.88226 0.77208 1.90819 1.71703 1.28354 1.48948 1.45937 1.05534 1.10565 1.75395 1.21473 0.89725 0.85925 1.01831 1.22713 0.91301 1.00052 0.99794 1.23915 1.00436 1.02074 0.94519 1.21097 0.87990 0.91623 0.93819 1.42168 1.17450 1.55086 1.19708 1.19296 0.94606 1.23719 0.99676 0.90992 1.24762 0.98947 1.00376 0.96819 1.69664 1.36037 1.37175 1.15200 0.86167 0.83165 0.78178 0.78539 1.21713 1.21759 1.20698 1.23434 0.97534 0.96265 1.01469 0.92451 0.91776 0.92446 0.90759 0.90761 0.91688 0.91677 0.89751 0.89999 0.90210 0.83778 0.83494 0.76647 0.91756 0.91491 0.88932 0.91387 0.91541 0.91953 0.78123 0.93461 0.91311 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.12 -1.10 6.30 -26.73 -0.17 -1.27 16 3 C 0.07 0.68 5.31 37.16 0.20 0.88 16 4 O -0.27 -3.77 8.22 -39.74 -0.33 -4.10 16 5 C 0.38 5.06 7.51 -16.61 -0.12 4.94 16 6 N -0.55 -6.31 9.11 -9.21 -0.08 -6.39 16 7 C 0.19 1.73 6.78 -82.53 -0.56 1.17 16 8 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 9 C -0.22 -1.81 9.71 -39.50 -0.38 -2.20 16 10 C 0.00 -0.04 9.64 -38.89 -0.37 -0.41 16 11 C -0.22 -2.76 5.90 -104.69 -0.62 -3.38 16 12 C 0.56 8.27 7.77 -12.47 -0.10 8.17 16 13 O -0.52 -9.43 15.19 -16.48 -0.25 -9.68 16 14 N -0.72 -9.31 5.51 -61.36 -0.34 -9.64 16 15 C 0.13 1.83 5.50 -4.05 -0.02 1.81 16 16 C -0.12 -1.77 3.62 -89.81 -0.33 -2.10 16 17 C -0.17 -2.76 7.44 -25.83 -0.19 -2.95 16 18 C 0.17 3.22 4.57 -67.03 -0.31 2.91 16 19 N -0.71 -17.13 5.31 -52.55 -0.28 -17.41 16 20 C -0.24 -6.57 9.97 -15.06 -0.15 -6.72 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 24 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.15 -2.35 7.39 -25.92 -0.19 -2.54 16 29 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.64 8.10 -51.93 -0.42 0.21 16 35 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 36 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.15 1.08 6.52 -52.49 -0.34 0.74 16 41 H 0.40 4.32 6.57 -40.82 -0.27 4.05 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.95 7.88 -51.93 -0.41 0.55 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 45 H 0.07 1.01 7.92 -51.93 -0.41 0.60 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 48 H 0.38 9.87 7.90 -40.82 -0.32 9.55 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 51 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 421.28 15.07 6.35 6.35 Total: -1.00 -33.42 421.28 -10.38 -43.80 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.47 Total: 9.82 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.68 Total: -2.93 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.02 Total: -60.23 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.58 Total: -13.77 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.42 -10.38 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091302928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.578 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds