Wall clock time and date at job start Wed Apr 1 2020 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47012 * 2 1 4 4 O 1.42894 * 109.46783 * 179.97438 * 3 2 1 5 5 C 1.35426 * 116.99738 * 180.02562 * 4 3 2 6 6 N 1.32235 * 119.80249 * 359.97360 * 5 4 3 7 7 C 1.31877 * 121.80131 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.40796 * 180.02562 * 7 6 5 9 9 C 1.38354 * 121.18679 * 359.72201 * 7 6 5 10 10 C 1.38336 * 119.45931 * 0.56297 * 9 7 6 11 11 C 1.39985 * 118.34632 * 359.44873 * 10 9 7 12 12 C 1.47520 * 120.59932 * 180.25484 * 11 10 9 13 13 O 1.21592 * 120.00597 * 179.97438 * 12 11 10 14 14 N 1.34782 * 120.00076 * 0.02562 * 12 11 10 15 15 C 1.46496 * 120.00413 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47302 * 180.02562 * 15 14 12 17 17 C 1.53788 * 113.61240 * 274.13349 * 16 15 14 18 18 C 1.53950 * 87.02088 * 220.04846 * 17 16 15 19 19 N 1.46504 * 113.53914 * 270.81156 * 18 17 16 20 20 C 1.36932 * 120.00026 * 252.50097 * 19 18 17 21 21 H 1.08002 * 120.00137 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00372 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99445 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00642 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47183 * 89.99656 * 24 22 20 26 26 H 1.48493 * 109.47432 * 210.00019 * 24 22 20 27 27 H 1.48508 * 109.46734 * 329.99732 * 24 22 20 28 28 C 1.53779 * 87.11257 * 25.36133 * 18 17 16 29 29 H 1.09008 * 109.46735 * 59.99851 * 1 2 3 30 30 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47290 * 300.00328 * 1 2 3 32 32 H 1.08993 * 109.46830 * 240.00101 * 2 1 3 33 33 H 1.08995 * 109.46922 * 119.99941 * 2 1 3 34 34 H 1.08996 * 109.46950 * 59.99917 * 3 2 1 35 35 H 1.08997 * 109.46940 * 300.00192 * 3 2 1 36 36 H 1.09009 * 109.46906 * 90.00151 * 8 7 6 37 37 H 1.08997 * 109.47681 * 209.99852 * 8 7 6 38 38 H 1.09006 * 109.47066 * 330.00504 * 8 7 6 39 39 H 1.08001 * 120.27158 * 180.29150 * 9 7 6 40 40 H 1.08002 * 120.83060 * 179.73053 * 10 9 7 41 41 H 0.97001 * 119.99536 * 0.02562 * 14 12 11 42 42 H 1.09006 * 109.47051 * 299.99957 * 15 14 12 43 43 H 1.09001 * 109.47219 * 59.99777 * 15 14 12 44 44 H 1.08994 * 112.85157 * 45.33101 * 16 15 14 45 45 H 1.09002 * 113.60977 * 334.57009 * 17 16 15 46 46 H 1.08998 * 113.61173 * 105.46926 * 17 16 15 47 47 H 1.09001 * 113.74323 * 139.94625 * 18 17 16 48 48 H 0.96997 * 119.99559 * 72.49413 * 19 18 17 49 49 H 0.97003 * 119.99919 * 180.02562 * 23 22 20 50 50 H 1.08991 * 113.61802 * 220.08959 * 28 18 17 51 51 H 1.09003 * 113.61442 * 89.18774 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0838 2.6492 0.0012 6 7 3.3597 3.7557 0.0007 7 6 3.9171 4.9509 0.0008 8 6 3.0400 6.1764 0.0008 9 6 5.2926 5.1000 0.0071 10 6 6.0988 3.9758 0.0017 11 6 5.4850 2.7177 0.0017 12 6 6.2969 1.4861 0.0017 13 8 5.7525 0.3989 0.0022 14 7 7.6424 1.5659 0.0022 15 6 8.4488 0.3428 0.0027 16 6 9.9338 0.7110 0.0038 17 6 10.5083 0.9579 -1.4012 18 6 11.7704 0.2139 -0.9283 19 7 12.7695 1.0901 -0.3117 20 6 13.9270 1.3860 -0.9809 21 1 14.1035 0.9730 -1.9631 22 6 14.8740 2.2157 -0.3965 23 7 14.6591 2.7186 0.8008 24 14 16.4533 2.6188 -1.3090 25 1 16.2527 3.8398 -2.1300 26 1 17.5445 2.8543 -0.3299 27 1 16.8180 1.4824 -2.1928 28 6 10.8701 -0.5058 0.0898 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6766 1.9564 -0.8900 36 1 2.8285 6.4718 1.0285 37 1 3.5522 6.9899 -0.5129 38 1 2.1048 5.9538 -0.5131 39 1 5.7333 6.0860 0.0118 40 1 7.1750 4.0665 0.0021 41 1 8.0767 2.4332 0.0029 42 1 8.2194 -0.2432 0.8928 43 1 8.2201 -0.2436 -0.8872 44 1 10.1741 1.4982 0.7184 45 1 9.9661 0.4392 -2.1918 46 1 10.6789 2.0111 -1.6242 47 1 12.1963 -0.4499 -1.6806 48 1 12.6111 1.4608 0.5706 49 1 15.3207 3.2988 1.2091 50 1 11.3325 -0.6326 1.0686 51 1 10.4272 -1.4255 -0.2926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091302928.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:15 Heat of formation + Delta-G solvation = -40.696144 kcal Electronic energy + Delta-G solvation = -29698.854847 eV Core-core repulsion = 25598.243350 eV Total energy + Delta-G solvation = -4100.611497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.04916 -40.60604 -39.66743 -39.29841 -36.02501 -35.06418 -34.99688 -34.03078 -32.60687 -32.02323 -29.55721 -28.49187 -27.23555 -26.42726 -25.68391 -24.23264 -24.04980 -23.05697 -22.53093 -21.57915 -19.96632 -19.47263 -19.29355 -18.57460 -17.89973 -17.56702 -16.79513 -16.57184 -16.40419 -15.98071 -15.82858 -15.53573 -15.43930 -15.42814 -15.24330 -14.68232 -14.60801 -14.58193 -14.09454 -13.77987 -13.70578 -13.31277 -13.26999 -13.21029 -13.05451 -12.97356 -12.92713 -12.90256 -12.61794 -12.28416 -12.15712 -12.06474 -12.02592 -11.58873 -11.55302 -11.47349 -11.21078 -11.00086 -10.95326 -10.83379 -10.60611 -10.10848 -9.49207 -8.98397 -7.94138 -5.22137 -0.41548 0.18875 1.49258 1.50028 1.58594 1.80978 1.91124 2.10701 2.56843 2.71533 3.06893 3.38426 3.62928 3.67381 3.73902 3.79114 3.81573 3.89508 3.90499 3.97411 4.15627 4.16233 4.28536 4.33169 4.34646 4.41334 4.51721 4.53407 4.68027 4.73526 4.73919 4.77562 4.79622 4.92376 4.94274 4.97792 5.00570 5.07895 5.12447 5.12879 5.13548 5.28393 5.29454 5.36059 5.45994 5.49442 5.55585 5.67051 6.19080 6.29519 6.48600 6.71478 7.19240 7.34790 8.11778 8.34548 9.28966 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.001950 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.329976 B =14353.233228 C =15918.813108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.065 3.935 4 O -0.297 6.297 5 C 0.357 3.643 6 N -0.559 5.559 7 C 0.185 3.815 8 C -0.106 4.106 9 C -0.211 4.211 10 C -0.001 4.001 11 C -0.243 4.243 12 C 0.560 3.440 13 O -0.564 6.564 14 N -0.713 5.713 15 C 0.142 3.858 16 C -0.101 4.101 17 C -0.153 4.153 18 C 0.144 3.856 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.968 5.968 24 Si 0.972 3.028 25 H -0.287 1.287 26 H -0.297 1.297 27 H -0.271 1.271 28 C -0.135 4.135 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.077 0.923 39 H 0.180 0.820 40 H 0.169 0.831 41 H 0.409 0.591 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.059 0.941 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.058 0.942 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.733 4.746 -1.614 29.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C -0.009 4.009 4 O -0.202 6.202 5 C 0.178 3.822 6 N -0.285 5.285 7 C 0.048 3.952 8 C -0.163 4.163 9 C -0.231 4.231 10 C -0.027 4.027 11 C -0.249 4.249 12 C 0.348 3.652 13 O -0.444 6.444 14 N -0.365 5.365 15 C 0.019 3.981 16 C -0.120 4.120 17 C -0.193 4.193 18 C 0.034 3.966 19 N -0.357 5.357 20 C -0.374 4.374 21 H 0.094 0.906 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.801 3.199 25 H -0.214 1.214 26 H -0.224 1.224 27 H -0.196 1.196 28 C -0.174 4.174 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.198 0.802 40 H 0.186 0.814 41 H 0.246 0.754 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.107 0.893 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -29.753 3.557 -1.752 30.016 hybrid contribution 1.969 0.778 0.115 2.120 sum -27.784 4.335 -1.637 28.168 Atomic orbital electron populations 1.21649 0.92097 1.03266 1.02786 1.21522 0.97617 0.93863 1.02985 1.22909 0.76500 0.99140 1.02396 1.86486 1.23706 1.24168 1.85842 1.19991 0.88498 0.85179 0.88578 1.67354 1.40479 0.98609 1.22106 1.21939 0.93463 0.92189 0.87634 1.20956 0.98912 0.91685 1.04717 1.22179 0.93362 1.01178 1.06358 1.21996 1.02073 0.89641 0.88952 1.20029 0.91402 0.95436 1.18014 1.18085 0.82405 0.88454 0.76274 1.90786 1.72481 1.30000 1.51105 1.45827 1.05095 1.10871 1.74754 1.21305 0.88791 0.86238 1.01755 1.22495 0.91804 0.99209 0.98500 1.23733 0.98720 1.00908 0.95949 1.21412 0.88242 0.91934 0.94992 1.42285 1.17950 1.56033 1.19412 1.19666 0.95385 1.22632 0.99717 0.90628 1.25524 1.02147 1.01165 0.97804 1.69810 1.36915 1.38365 1.16740 0.85164 0.79359 0.78092 0.77284 1.21418 1.22356 1.19600 1.23344 0.96590 0.97492 0.99993 0.91734 0.90790 0.91741 0.91743 0.91765 0.91464 0.91435 0.88426 0.87479 0.90382 0.80223 0.81389 0.75374 0.91989 0.91493 0.89758 0.89261 0.93008 0.92260 0.79300 0.94047 0.92306 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -2.24 6.30 30.60 0.19 -2.04 16 3 C 0.07 1.41 5.31 71.98 0.38 1.79 16 4 O -0.30 -8.75 8.22 -66.39 -0.55 -9.30 16 5 C 0.36 9.71 7.51 85.13 0.64 10.35 16 6 N -0.56 -12.59 9.11 -296.06 -2.70 -15.28 16 7 C 0.19 2.97 6.78 42.58 0.29 3.26 16 8 C -0.11 -0.84 10.16 71.24 0.72 -0.12 16 9 C -0.21 -2.88 9.71 22.32 0.22 -2.67 16 10 C 0.00 -0.02 9.64 22.72 0.22 0.20 16 11 C -0.24 -6.18 5.90 -19.91 -0.12 -6.30 16 12 C 0.56 16.64 7.77 86.69 0.67 17.31 16 13 O -0.56 -21.02 15.19 16.81 0.26 -20.76 16 14 N -0.71 -17.82 5.51 -466.29 -2.57 -20.39 16 15 C 0.14 3.75 5.50 86.38 0.47 4.23 16 16 C -0.10 -2.88 3.62 -10.27 -0.04 -2.91 16 17 C -0.15 -4.78 7.44 31.18 0.23 -4.55 16 18 C 0.14 5.44 4.57 45.57 0.21 5.65 16 19 N -0.72 -34.99 5.31 -320.17 -1.70 -36.69 16 20 C -0.24 -13.15 9.97 84.03 0.84 -12.31 16 21 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 22 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 23 N -0.97 -57.81 13.06 21.65 0.28 -57.53 16 24 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 25 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 C -0.13 -4.12 7.39 31.12 0.23 -3.89 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 35 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 36 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.11 0.34 8.07 -2.39 -0.02 0.32 16 38 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.17 2.06 6.52 -2.91 -0.02 2.04 16 41 H 0.41 8.32 6.57 -92.71 -0.61 7.71 16 42 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 43 H 0.07 1.81 7.88 -2.39 -0.02 1.79 16 44 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.09 2.45 7.92 -2.39 -0.02 2.43 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 2.25 8.10 -2.39 -0.02 2.24 16 48 H 0.37 19.49 7.90 -92.71 -0.73 18.76 16 49 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 51 H 0.10 2.65 8.10 -2.39 -0.02 2.63 16 Total: -1.00 -74.11 421.28 0.99 -73.11 By element: Atomic # 1 Polarization: 36.58 SS G_CDS: -0.40 Total: 36.17 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 6.34 Total: 3.35 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -6.68 Total: -129.89 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.29 Total: -30.06 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.11 0.99 -73.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091302928.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.418 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds