Wall clock time and date at job start Wed Apr 1 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.91531 * 2 1 4 4 C 1.54905 * 111.00365 * 236.10228 * 2 1 3 5 5 N 1.47433 * 104.83331 * 204.91593 * 4 2 1 6 6 C 1.36932 * 125.64481 * 204.16156 * 5 4 2 7 7 H 1.08004 * 119.99695 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00639 * 359.96117 * 6 5 4 9 9 N 1.31617 * 119.99844 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00302 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46882 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47358 * 119.99582 * 10 8 6 13 13 H 1.48500 * 109.46915 * 239.99975 * 10 8 6 14 14 C 1.47018 * 108.69968 * 24.12661 * 5 4 2 15 15 C 1.54324 * 107.27554 * 358.94023 * 14 5 4 16 16 H 1.09007 * 110.71667 * 96.34450 * 15 14 5 17 17 C 1.52994 * 110.72387 * 219.44330 * 15 14 5 18 18 N 1.46497 * 109.47306 * 293.54802 * 17 15 14 19 19 C 1.34776 * 120.00107 * 179.97438 * 18 17 15 20 20 O 1.21494 * 120.00302 * 359.97438 * 19 18 17 21 21 C 1.48327 * 119.99882 * 180.02562 * 19 18 17 22 22 N 1.31504 * 127.15798 * 0.02562 * 21 19 18 23 23 O 1.21430 * 111.52742 * 179.72469 * 22 21 19 24 24 C 1.33182 * 111.57115 * 359.96695 * 23 22 21 25 25 C 1.35377 * 106.63665 * 0.07512 * 24 23 22 26 26 C 1.50060 * 124.94097 * 179.80206 * 25 24 23 27 27 C 1.53549 * 108.23159 * 343.94124 * 26 25 24 28 28 H 1.09010 * 109.45618 * 289.18602 * 27 26 25 29 29 C 1.53000 * 109.46847 * 169.20702 * 27 26 25 30 30 C 1.53107 * 109.51048 * 49.18926 * 27 26 25 31 31 C 1.50601 * 129.60485 * 180.18815 * 24 23 22 32 32 H 1.09007 * 109.47038 * 296.09622 * 1 2 3 33 33 H 1.08997 * 109.47379 * 56.09224 * 1 2 3 34 34 H 1.09005 * 109.47367 * 176.09977 * 1 2 3 35 35 H 1.08994 * 110.36972 * 86.07529 * 4 2 1 36 36 H 1.08998 * 110.36869 * 323.75292 * 4 2 1 37 37 H 0.97005 * 120.00345 * 180.02562 * 9 8 6 38 38 H 1.09003 * 109.88024 * 239.52187 * 14 5 4 39 39 H 1.09004 * 109.87901 * 118.35838 * 14 5 4 40 40 H 1.09003 * 109.47462 * 173.54551 * 17 15 14 41 41 H 1.09006 * 109.46941 * 53.54299 * 17 15 14 42 42 H 0.97001 * 120.00094 * 0.02562 * 18 17 15 43 43 H 1.09003 * 109.71439 * 224.25429 * 26 25 24 44 44 H 1.09006 * 109.75074 * 103.64451 * 26 25 24 45 45 H 1.09005 * 109.46676 * 299.95786 * 29 27 26 46 46 H 1.08996 * 109.47148 * 59.95688 * 29 27 26 47 47 H 1.09000 * 109.47322 * 179.97438 * 29 27 26 48 48 H 1.08994 * 109.43028 * 170.06568 * 30 27 26 49 49 H 1.09005 * 109.38234 * 50.19609 * 30 27 26 50 50 H 1.09002 * 109.69266 * 282.92109 * 31 24 23 51 51 H 1.09002 * 109.69450 * 43.46624 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2003 5 7 3.4271 -1.2430 -0.7734 6 6 4.4643 -1.5653 -1.6073 7 1 5.4130 -1.8749 -1.1944 8 6 4.2964 -1.4944 -2.9834 9 7 3.1400 -1.1178 -3.4867 10 14 5.7112 -1.9347 -4.1210 11 1 6.8940 -2.3240 -3.3120 12 1 5.3115 -3.0692 -4.9918 13 1 6.0529 -0.7604 -4.9634 14 6 3.4674 -1.2741 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6633 1.4238 17 6 2.2349 0.0875 2.4338 18 7 2.7615 -0.7013 3.5503 19 6 2.9763 -0.1173 4.7458 20 8 2.7337 1.0635 4.8975 21 6 3.5100 -0.9158 5.8761 22 7 3.8210 -2.1935 5.8689 23 8 4.2390 -2.5565 6.9497 24 6 4.2613 -1.5552 7.8275 25 6 3.7948 -0.4616 7.1800 26 6 3.6430 0.9000 7.7921 27 6 3.7086 0.7504 9.3188 28 1 2.8021 0.2608 9.6750 29 6 3.8274 2.1335 9.9621 30 6 4.9276 -0.0950 9.6979 31 6 4.7027 -1.5503 9.2674 32 1 -0.3633 0.4521 0.9230 33 1 -0.3634 0.5733 -0.8529 34 1 -0.3634 -1.0253 -0.0699 35 1 2.1559 -0.1719 -2.0836 36 1 1.4518 -1.6703 -1.4025 37 1 3.0225 -1.0686 -4.4484 38 1 4.2426 -0.5998 1.0598 39 1 3.6650 -2.2894 1.0399 40 1 1.2618 0.4968 2.7052 41 1 2.9224 0.9031 2.2091 42 1 2.9563 -1.6438 3.4290 43 1 2.6818 1.3269 7.5055 44 1 4.4496 1.5491 7.4513 45 1 4.7340 2.6231 9.6062 46 1 2.9596 2.7354 9.6923 47 1 3.8735 2.0275 11.0459 48 1 5.0753 -0.0548 10.7770 49 1 5.8113 0.2991 9.1960 50 1 3.9305 -2.0024 9.8898 51 1 5.6315 -2.1117 9.3688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093093616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:12 Heat of formation + Delta-G solvation = 27.390046 kcal Electronic energy + Delta-G solvation = -30598.276123 eV Core-core repulsion = 26500.617065 eV Total energy + Delta-G solvation = -4097.659058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.32034 -39.73227 -38.55570 -37.96983 -34.76937 -34.15645 -32.95305 -32.78079 -30.77745 -30.69794 -29.34047 -27.54882 -26.16357 -25.44622 -24.40032 -23.87984 -22.55562 -22.32368 -20.84030 -19.88788 -19.82625 -19.16691 -18.08584 -17.81091 -16.89751 -16.60186 -15.92508 -15.51335 -15.39669 -14.92065 -14.73343 -14.30470 -14.26937 -14.04786 -13.73731 -13.69151 -13.49180 -13.21086 -13.08946 -12.76809 -12.64612 -12.52219 -12.18055 -11.93179 -11.68507 -11.55906 -11.45742 -11.39419 -11.15147 -11.10459 -10.93081 -10.87620 -10.81280 -10.45028 -10.41577 -10.14621 -9.98974 -9.91270 -9.77244 -9.40926 -9.37499 -9.05742 -8.65505 -6.83235 -5.65356 -3.06992 0.91830 1.43787 2.58886 2.93279 3.08458 3.39816 3.45363 3.47859 3.79066 4.15461 4.21159 4.30733 4.48541 4.57719 4.63023 4.79124 4.89993 4.97731 5.05272 5.18631 5.22090 5.22642 5.28805 5.32291 5.36954 5.38741 5.46591 5.49170 5.55639 5.57013 5.65640 5.73762 5.81714 5.84850 5.94115 5.97348 6.04093 6.07935 6.18723 6.24766 6.35691 6.51626 6.59316 6.62561 6.78014 6.94069 7.35724 7.53523 7.63708 7.79265 7.86215 8.04278 8.36303 9.22368 9.82971 10.47865 11.38546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.002129 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.865839 B =13148.947394 C =13982.545346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.072 0.928 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.221 4.221 7 H 0.077 0.923 8 C -0.012 4.012 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.290 1.290 13 H -0.290 1.290 14 C 0.140 3.860 15 C -0.111 4.111 16 H 0.078 0.922 17 C 0.132 3.868 18 N -0.707 5.707 19 C 0.596 3.404 20 O -0.524 6.524 21 C -0.015 4.015 22 N -0.334 5.334 23 O 0.128 5.872 24 C -0.040 4.040 25 C -0.152 4.152 26 C -0.039 4.039 27 C -0.096 4.096 28 H 0.075 0.925 29 C -0.146 4.146 30 C -0.115 4.115 31 C -0.034 4.034 32 H 0.044 0.956 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.013 0.987 37 H 0.251 0.749 38 H 0.024 0.976 39 H 0.019 0.981 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.408 0.592 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.095 0.905 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 2.368 28.830 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.130 4.130 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.330 5.330 6 C -0.350 4.350 7 H 0.095 0.905 8 C -0.208 4.208 9 N -0.571 5.571 10 Si 0.745 3.255 11 H -0.206 1.206 12 H -0.217 1.217 13 H -0.217 1.217 14 C 0.014 3.986 15 C -0.130 4.130 16 H 0.096 0.904 17 C 0.010 3.990 18 N -0.358 5.358 19 C 0.379 3.621 20 O -0.399 6.399 21 C -0.173 4.173 22 N -0.036 5.036 23 O 0.055 5.945 24 C -0.105 4.105 25 C -0.157 4.157 26 C -0.077 4.077 27 C -0.114 4.114 28 H 0.094 0.906 29 C -0.204 4.204 30 C -0.152 4.152 31 C -0.072 4.072 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.125 0.875 36 H 0.031 0.969 37 H 0.062 0.938 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.243 0.757 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.113 0.887 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.201 2.291 27.682 27.803 hybrid contribution 0.771 -0.293 -0.420 0.925 sum -0.430 1.998 27.263 27.339 Atomic orbital electron populations 1.21656 0.95443 1.01460 1.00683 1.22604 0.94634 0.99511 0.96274 0.90955 1.21994 0.84032 0.95897 0.94649 1.44494 1.10573 1.78999 0.98960 1.19124 0.91023 1.37587 0.87217 0.90504 1.24790 0.97318 1.02035 0.96616 1.69803 1.22327 1.53978 1.10960 0.85995 0.81120 0.77606 0.80780 1.20555 1.21749 1.21720 1.21334 0.93368 0.97191 0.86689 1.22510 0.98803 0.98187 0.93513 0.90398 1.21562 0.99075 0.94156 0.84246 1.45976 1.64855 1.14595 1.10372 1.16836 0.78129 0.85949 0.81140 1.90780 1.51838 1.14495 1.82784 1.23082 1.06090 0.91349 0.96774 1.74602 1.13334 1.13997 1.01712 1.84688 1.60066 1.35043 1.14715 1.24140 1.03578 0.86857 0.95898 1.20652 1.04394 0.98695 0.91955 1.20068 1.04098 0.90451 0.93061 1.21322 0.98630 0.96778 0.94709 0.90612 1.21804 1.02391 0.95853 1.00328 1.21736 0.98919 0.92677 1.01886 1.20260 1.02721 0.99108 0.85147 0.93659 0.92591 0.92929 0.87535 0.96861 0.93779 0.95826 0.96326 0.91175 0.90837 0.75699 0.89221 0.89750 0.92338 0.92200 0.92380 0.89944 0.90916 0.88694 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.31 37.15 0.35 -1.74 16 2 C -0.11 -2.05 3.09 -88.48 -0.27 -2.32 16 3 H 0.07 1.36 8.05 -51.93 -0.42 0.95 16 4 C 0.16 3.85 5.36 -2.53 -0.01 3.84 16 5 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16 6 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 7 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 8 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 9 N -0.92 -27.04 10.09 55.49 0.56 -26.48 16 10 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 C 0.14 2.96 6.52 -3.07 -0.02 2.94 16 15 C -0.11 -1.91 2.48 -88.79 -0.22 -2.13 16 16 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 17 C 0.13 2.04 4.99 -4.05 -0.02 2.02 16 18 N -0.71 -10.44 5.40 -61.10 -0.33 -10.77 16 19 C 0.60 9.16 7.85 -12.11 -0.10 9.07 16 20 O -0.52 -9.04 16.09 5.37 0.09 -8.95 16 21 C -0.01 -0.20 7.19 -82.82 -0.60 -0.80 16 22 N -0.33 -4.49 11.89 33.29 0.40 -4.09 16 23 O 0.13 1.45 11.18 19.21 0.21 1.67 16 24 C -0.04 -0.37 7.38 -35.38 -0.26 -0.64 16 25 C -0.15 -1.70 6.04 -104.92 -0.63 -2.34 16 26 C -0.04 -0.37 4.96 -27.91 -0.14 -0.50 16 27 C -0.10 -0.58 2.71 -90.28 -0.24 -0.83 16 28 H 0.08 0.45 8.12 -51.92 -0.42 0.03 16 29 C -0.15 -0.75 9.16 37.16 0.34 -0.41 16 30 C -0.11 -0.53 5.18 -26.46 -0.14 -0.67 16 31 C -0.03 -0.17 6.31 -27.71 -0.17 -0.35 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 36 H 0.01 0.34 7.98 -51.93 -0.41 -0.07 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.02 0.51 7.77 -51.93 -0.40 0.11 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 42 H 0.41 5.75 8.10 -40.82 -0.33 5.42 16 43 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 44 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 45 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.08 0.23 8.11 -51.93 -0.42 -0.19 16 49 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 50 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 404.89 15.07 6.10 6.10 Total: -1.00 -32.47 404.89 -9.53 -42.00 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.57 Total: 1.15 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -2.39 Total: -1.72 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: 0.05 Total: -57.59 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.30 Total: -7.28 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.47 -9.53 -42.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093093616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.395 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds