Wall clock time and date at job start Wed Apr 1 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.91531 * 2 1 4 4 C 1.54905 * 111.00365 * 236.10228 * 2 1 3 5 5 N 1.47433 * 104.83331 * 204.91593 * 4 2 1 6 6 C 1.36932 * 125.64481 * 204.16156 * 5 4 2 7 7 H 1.08004 * 119.99695 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00639 * 359.96117 * 6 5 4 9 9 N 1.31617 * 119.99844 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00302 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46882 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47358 * 119.99582 * 10 8 6 13 13 H 1.48500 * 109.46915 * 239.99975 * 10 8 6 14 14 C 1.47018 * 108.69968 * 24.12661 * 5 4 2 15 15 C 1.54324 * 107.27554 * 358.94023 * 14 5 4 16 16 H 1.09007 * 110.71667 * 96.34450 * 15 14 5 17 17 C 1.52994 * 110.72387 * 219.44330 * 15 14 5 18 18 N 1.46497 * 109.47306 * 293.54802 * 17 15 14 19 19 C 1.34776 * 120.00107 * 179.97438 * 18 17 15 20 20 O 1.21494 * 120.00302 * 359.97438 * 19 18 17 21 21 C 1.48327 * 119.99882 * 180.02562 * 19 18 17 22 22 N 1.31504 * 127.15798 * 0.02562 * 21 19 18 23 23 O 1.21430 * 111.52742 * 179.72469 * 22 21 19 24 24 C 1.33182 * 111.57115 * 359.96695 * 23 22 21 25 25 C 1.35377 * 106.63665 * 0.07512 * 24 23 22 26 26 C 1.50060 * 124.94097 * 179.80206 * 25 24 23 27 27 C 1.53549 * 108.23159 * 343.94124 * 26 25 24 28 28 H 1.09010 * 109.45618 * 289.18602 * 27 26 25 29 29 C 1.53000 * 109.46847 * 169.20702 * 27 26 25 30 30 C 1.53107 * 109.51048 * 49.18926 * 27 26 25 31 31 C 1.50601 * 129.60485 * 180.18815 * 24 23 22 32 32 H 1.09007 * 109.47038 * 296.09622 * 1 2 3 33 33 H 1.08997 * 109.47379 * 56.09224 * 1 2 3 34 34 H 1.09005 * 109.47367 * 176.09977 * 1 2 3 35 35 H 1.08994 * 110.36972 * 86.07529 * 4 2 1 36 36 H 1.08998 * 110.36869 * 323.75292 * 4 2 1 37 37 H 0.97005 * 120.00345 * 180.02562 * 9 8 6 38 38 H 1.09003 * 109.88024 * 239.52187 * 14 5 4 39 39 H 1.09004 * 109.87901 * 118.35838 * 14 5 4 40 40 H 1.09003 * 109.47462 * 173.54551 * 17 15 14 41 41 H 1.09006 * 109.46941 * 53.54299 * 17 15 14 42 42 H 0.97001 * 120.00094 * 0.02562 * 18 17 15 43 43 H 1.09003 * 109.71439 * 224.25429 * 26 25 24 44 44 H 1.09006 * 109.75074 * 103.64451 * 26 25 24 45 45 H 1.09005 * 109.46676 * 299.95786 * 29 27 26 46 46 H 1.08996 * 109.47148 * 59.95688 * 29 27 26 47 47 H 1.09000 * 109.47322 * 179.97438 * 29 27 26 48 48 H 1.08994 * 109.43028 * 170.06568 * 30 27 26 49 49 H 1.09005 * 109.38234 * 50.19609 * 30 27 26 50 50 H 1.09002 * 109.69266 * 282.92109 * 31 24 23 51 51 H 1.09002 * 109.69450 * 43.46624 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2003 5 7 3.4271 -1.2430 -0.7734 6 6 4.4643 -1.5653 -1.6073 7 1 5.4130 -1.8749 -1.1944 8 6 4.2964 -1.4944 -2.9834 9 7 3.1400 -1.1178 -3.4867 10 14 5.7112 -1.9347 -4.1210 11 1 6.8940 -2.3240 -3.3120 12 1 5.3115 -3.0692 -4.9918 13 1 6.0529 -0.7604 -4.9634 14 6 3.4674 -1.2741 0.6959 15 6 2.0861 -0.8079 1.2022 16 1 1.4478 -1.6633 1.4238 17 6 2.2349 0.0875 2.4338 18 7 2.7615 -0.7013 3.5503 19 6 2.9763 -0.1173 4.7458 20 8 2.7337 1.0635 4.8975 21 6 3.5100 -0.9158 5.8761 22 7 3.8210 -2.1935 5.8689 23 8 4.2390 -2.5565 6.9497 24 6 4.2613 -1.5552 7.8275 25 6 3.7948 -0.4616 7.1800 26 6 3.6430 0.9000 7.7921 27 6 3.7086 0.7504 9.3188 28 1 2.8021 0.2608 9.6750 29 6 3.8274 2.1335 9.9621 30 6 4.9276 -0.0950 9.6979 31 6 4.7027 -1.5503 9.2674 32 1 -0.3633 0.4521 0.9230 33 1 -0.3634 0.5733 -0.8529 34 1 -0.3634 -1.0253 -0.0699 35 1 2.1559 -0.1719 -2.0836 36 1 1.4518 -1.6703 -1.4025 37 1 3.0225 -1.0686 -4.4484 38 1 4.2426 -0.5998 1.0598 39 1 3.6650 -2.2894 1.0399 40 1 1.2618 0.4968 2.7052 41 1 2.9224 0.9031 2.2091 42 1 2.9563 -1.6438 3.4290 43 1 2.6818 1.3269 7.5055 44 1 4.4496 1.5491 7.4513 45 1 4.7340 2.6231 9.6062 46 1 2.9596 2.7354 9.6923 47 1 3.8735 2.0275 11.0459 48 1 5.0753 -0.0548 10.7770 49 1 5.8113 0.2991 9.1960 50 1 3.9305 -2.0024 9.8898 51 1 5.6315 -2.1117 9.3688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093093616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:11 Heat of formation + Delta-G solvation = 8.115994 kcal Electronic energy + Delta-G solvation = -30599.111909 eV Core-core repulsion = 26500.617065 eV Total energy + Delta-G solvation = -4098.494844 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.23333 -40.99496 -39.64695 -39.06581 -36.23583 -35.13944 -34.65995 -33.39218 -32.60721 -31.46490 -30.77570 -28.28957 -27.90845 -26.96399 -25.59433 -24.60500 -24.02662 -23.06344 -21.98237 -21.52145 -20.95955 -20.28737 -19.06186 -18.88353 -18.63996 -17.72567 -17.30150 -16.84753 -16.54952 -16.13948 -15.88132 -15.62806 -15.23706 -15.11239 -14.81719 -14.74146 -14.43443 -14.33616 -14.19296 -14.04741 -13.72471 -13.59743 -13.44325 -13.09759 -13.04277 -12.80329 -12.72241 -12.69369 -12.52615 -12.28752 -11.97914 -11.95266 -11.87926 -11.74965 -11.66798 -11.59015 -11.46851 -11.35053 -11.27212 -11.09695 -10.78600 -10.31211 -10.13648 -8.92516 -7.80915 -5.25761 -0.04621 0.59193 1.43437 1.44457 1.54852 1.71011 1.93158 1.95834 2.45843 2.79928 3.27707 3.42264 3.55656 3.58104 3.71936 3.80971 3.85987 3.90767 3.92641 4.04081 4.20607 4.24581 4.30298 4.43436 4.46692 4.54579 4.54969 4.67561 4.70604 4.74847 4.77889 4.78444 4.87560 4.89687 4.97888 5.02481 5.04449 5.07660 5.13804 5.18491 5.20395 5.33512 5.33733 5.34900 5.41312 5.45859 5.52919 5.68586 5.80555 6.17037 6.28501 6.78896 6.96147 7.07823 7.74420 8.38223 9.20768 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.002129 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.865839 B =13148.947394 C =13982.545346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 H 0.070 0.930 4 C 0.162 3.838 5 N -0.628 5.628 6 C -0.241 4.241 7 H 0.077 0.923 8 C -0.067 4.067 9 N -0.947 5.947 10 Si 0.981 3.019 11 H -0.269 1.269 12 H -0.290 1.290 13 H -0.289 1.289 14 C 0.137 3.863 15 C -0.091 4.091 16 H 0.092 0.908 17 C 0.144 3.856 18 N -0.704 5.704 19 C 0.596 3.404 20 O -0.548 6.548 21 C -0.040 4.040 22 N -0.355 5.355 23 O 0.133 5.867 24 C -0.021 4.021 25 C -0.172 4.172 26 C -0.038 4.038 27 C -0.091 4.091 28 H 0.080 0.920 29 C -0.145 4.145 30 C -0.112 4.112 31 C -0.034 4.034 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.072 0.928 36 H -0.009 1.009 37 H 0.248 0.752 38 H 0.019 0.981 39 H 0.021 0.979 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.411 0.589 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.076 0.924 48 H 0.112 0.888 49 H 0.066 0.934 50 H 0.120 0.880 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 1.906 31.997 32.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.088 0.912 4 C 0.037 3.963 5 N -0.354 5.354 6 C -0.370 4.370 7 H 0.094 0.906 8 C -0.259 4.259 9 N -0.596 5.596 10 Si 0.809 3.191 11 H -0.194 1.194 12 H -0.217 1.217 13 H -0.216 1.216 14 C 0.012 3.988 15 C -0.110 4.110 16 H 0.111 0.889 17 C 0.021 3.979 18 N -0.355 5.355 19 C 0.380 3.620 20 O -0.425 6.425 21 C -0.197 4.197 22 N -0.056 5.056 23 O 0.059 5.941 24 C -0.085 4.085 25 C -0.177 4.177 26 C -0.076 4.076 27 C -0.109 4.109 28 H 0.099 0.901 29 C -0.202 4.202 30 C -0.149 4.149 31 C -0.072 4.072 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.009 0.991 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.247 0.753 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.095 0.905 48 H 0.130 0.870 49 H 0.085 0.915 50 H 0.138 0.862 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.822 1.822 30.866 30.931 hybrid contribution 0.692 -0.175 -1.347 1.525 sum -0.129 1.647 29.519 29.565 Atomic orbital electron populations 1.21612 0.92551 1.01975 1.02385 1.22441 0.96895 0.98418 0.94073 0.91175 1.21789 0.83554 0.94989 0.95974 1.44816 1.10642 1.79060 1.00878 1.19456 0.91844 1.37562 0.88114 0.90557 1.25642 0.99856 1.02392 0.98047 1.70056 1.23994 1.54748 1.10833 0.84976 0.78522 0.77040 0.78582 1.19366 1.21692 1.21615 1.21472 0.95674 0.97285 0.84351 1.22342 0.96443 0.98639 0.93591 0.88927 1.21367 0.99674 0.93257 0.83603 1.45915 1.64769 1.14673 1.10165 1.17051 0.77605 0.85812 0.81492 1.90757 1.52950 1.15518 1.83274 1.23035 1.07496 0.91817 0.97307 1.74583 1.14254 1.13914 1.02873 1.84653 1.59368 1.35560 1.14566 1.24945 1.01213 0.85339 0.97017 1.20946 1.05331 1.00156 0.91314 1.20089 1.02586 0.89300 0.95586 1.21312 0.99801 0.97811 0.92003 0.90117 1.21796 1.01915 0.95127 1.01372 1.21773 0.97659 0.91863 1.03604 1.20614 1.04460 0.99931 0.82147 0.90648 0.92403 0.92823 0.91045 0.99121 0.94232 0.96325 0.96067 0.89496 0.92058 0.75280 0.91207 0.90708 0.92574 0.93041 0.90512 0.86980 0.91502 0.86226 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.31 71.98 0.67 -3.09 16 2 C -0.10 -3.63 3.09 -9.40 -0.03 -3.66 16 3 H 0.07 2.63 8.05 -2.39 -0.02 2.61 16 4 C 0.16 8.08 5.36 86.85 0.47 8.54 16 5 N -0.63 -33.44 3.39 -691.99 -2.35 -35.79 16 6 C -0.24 -13.97 10.27 84.03 0.86 -13.10 16 7 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 8 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 9 N -0.95 -57.31 10.09 21.65 0.22 -57.09 16 10 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 C 0.14 5.85 6.52 86.73 0.57 6.42 16 15 C -0.09 -3.07 2.48 -9.61 -0.02 -3.09 16 16 H 0.09 2.90 8.04 -2.38 -0.02 2.88 16 17 C 0.14 4.31 4.99 86.38 0.43 4.74 16 18 N -0.70 -20.59 5.40 -465.51 -2.51 -23.10 16 19 C 0.60 18.46 7.85 86.93 0.68 19.15 16 20 O -0.55 -19.19 16.09 -3.70 -0.06 -19.25 16 21 C -0.04 -1.10 7.19 42.55 0.31 -0.80 16 22 N -0.35 -9.39 11.89 -48.93 -0.58 -9.97 16 23 O 0.13 2.84 11.18 78.76 0.88 3.72 16 24 C -0.02 -0.34 7.38 24.99 0.18 -0.16 16 25 C -0.17 -3.76 6.04 -20.05 -0.12 -3.88 16 26 C -0.04 -0.70 4.96 29.83 0.15 -0.55 16 27 C -0.09 -0.92 2.71 -10.57 -0.03 -0.94 16 28 H 0.08 0.76 8.12 -2.38 -0.02 0.74 16 29 C -0.14 -1.21 9.16 71.98 0.66 -0.55 16 30 C -0.11 -0.65 5.18 30.77 0.16 -0.49 16 31 C -0.03 -0.21 6.31 29.96 0.19 -0.02 16 32 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.57 8.07 -2.38 -0.02 1.55 16 35 H 0.07 4.09 5.87 -2.39 -0.01 4.07 16 36 H -0.01 -0.49 7.98 -2.39 -0.02 -0.51 16 37 H 0.25 14.49 8.31 -92.70 -0.77 13.71 16 38 H 0.02 0.82 7.77 -2.39 -0.02 0.80 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.06 2.02 8.06 -2.38 -0.02 2.00 16 42 H 0.41 11.48 8.10 -92.71 -0.75 10.72 16 43 H 0.07 1.53 7.85 -2.39 -0.02 1.51 16 44 H 0.07 1.47 8.12 -2.38 -0.02 1.45 16 45 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 46 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 48 H 0.11 0.09 8.11 -2.39 -0.02 0.07 16 49 H 0.07 0.51 8.12 -2.38 -0.02 0.49 16 50 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 51 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -73.52 404.89 3.39 -70.14 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.18 Total: 17.44 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 5.59 Total: 5.11 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -5.23 Total: -125.94 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.82 Total: -15.53 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -73.52 3.39 -70.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093093616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.252 kcal (2) G-P(sol) polarization free energy of solvation -73.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds