Wall clock time and date at job start Wed Apr 1 2020 05:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.39175 * 2 1 4 4 C 1.54393 * 110.34062 * 237.77135 * 2 1 3 5 5 N 1.48138 * 104.61716 * 264.99559 * 4 2 1 6 6 C 1.34781 * 127.83911 * 140.39537 * 5 4 2 7 7 O 1.21495 * 120.00203 * 179.97438 * 6 5 4 8 8 C 1.48325 * 119.99803 * 359.97438 * 6 5 4 9 9 N 1.31499 * 127.15620 * 0.02562 * 8 6 5 10 10 O 1.21436 * 111.52623 * 179.97438 * 9 8 6 11 11 C 1.33185 * 111.56985 * 359.96672 * 10 9 8 12 12 C 1.35377 * 106.63549 * 359.83777 * 11 10 9 13 13 C 1.50067 * 124.93995 * 180.02562 * 12 11 10 14 14 C 1.53546 * 108.22563 * 344.07936 * 13 12 11 15 15 H 1.09002 * 109.46691 * 289.19315 * 14 13 12 16 16 C 1.53001 * 109.46354 * 169.21058 * 14 13 12 17 17 C 1.53110 * 109.50607 * 49.20798 * 14 13 12 18 18 C 1.50599 * 129.60373 * 180.19502 * 11 10 9 19 19 C 1.48144 * 104.32696 * 320.41368 * 5 4 2 20 20 C 1.54281 * 110.34236 * 122.23499 * 2 1 3 21 21 H 1.08997 * 110.34401 * 359.89308 * 20 2 1 22 22 C 1.53004 * 110.34260 * 237.73741 * 20 2 1 23 23 N 1.46499 * 109.46939 * 175.00071 * 22 20 2 24 24 C 1.36932 * 119.99549 * 180.02562 * 23 22 20 25 25 H 1.08003 * 120.00354 * 0.02562 * 24 23 22 26 26 C 1.38817 * 120.00011 * 179.97438 * 24 23 22 27 27 N 1.31619 * 120.00154 * 180.02562 * 26 24 23 28 28 Si 1.86798 * 119.99635 * 0.02562 * 26 24 23 29 29 H 1.48506 * 109.47297 * 269.99668 * 28 26 24 30 30 H 1.48503 * 109.47261 * 149.99848 * 28 26 24 31 31 H 1.48500 * 109.47454 * 29.99841 * 28 26 24 32 32 H 1.09003 * 109.47143 * 297.76537 * 1 2 3 33 33 H 1.08998 * 109.47158 * 57.76800 * 1 2 3 34 34 H 1.09001 * 109.47268 * 177.76260 * 1 2 3 35 35 H 1.09003 * 110.40475 * 23.78075 * 4 2 1 36 36 H 1.08996 * 110.40415 * 146.09401 * 4 2 1 37 37 H 1.08999 * 109.71235 * 103.76285 * 13 12 11 38 38 H 1.08999 * 109.71232 * 224.39092 * 13 12 11 39 39 H 1.08995 * 109.47353 * 59.99663 * 16 14 13 40 40 H 1.09001 * 109.47263 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.47240 * 299.99950 * 16 14 13 42 42 H 1.08998 * 109.42660 * 50.21449 * 17 14 13 43 43 H 1.08997 * 109.42816 * 170.06134 * 17 14 13 44 44 H 1.08998 * 109.69338 * 282.93156 * 18 11 10 45 45 H 1.09000 * 109.69417 * 43.51706 * 18 11 10 46 46 H 1.08999 * 110.41184 * 280.80318 * 19 5 4 47 47 H 1.09004 * 110.40868 * 158.36978 * 19 5 4 48 48 H 1.09008 * 109.46680 * 55.00381 * 22 20 2 49 49 H 1.08994 * 109.47425 * 295.00309 * 22 20 2 50 50 H 0.96993 * 120.00302 * 0.02562 * 23 22 20 51 51 H 0.96998 * 119.99442 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3139 -2.1437 -0.7228 6 6 2.0769 -3.3105 -1.3546 7 8 2.3365 -4.3625 -0.8052 8 6 1.4992 -3.3100 -2.7208 9 7 1.1674 -2.2621 -3.4424 10 8 0.7193 -2.5888 -4.5228 11 6 0.6951 -3.9131 -4.6626 12 6 1.1967 -4.4329 -3.5177 13 6 1.3561 -5.8984 -3.2367 14 6 0.5094 -6.6772 -4.2536 15 1 -0.5480 -6.5369 -4.0290 16 6 0.8549 -8.1654 -4.1712 17 6 0.8040 -6.1625 -5.6651 18 6 0.2293 -4.7471 -5.8268 19 6 2.8802 -1.9423 0.6312 20 6 2.0663 -0.7716 1.2236 21 1 1.2398 -1.1490 1.8257 22 6 2.9693 0.1305 2.0674 23 7 3.3711 -0.5808 3.2834 24 6 4.1857 0.0322 4.1975 25 1 4.5317 1.0402 4.0223 26 6 4.5661 -0.6416 5.3501 27 7 5.3487 -0.0522 6.2290 28 14 3.9671 -2.3847 5.6535 29 1 2.6833 -2.3444 6.3990 30 1 4.9790 -3.1242 6.4502 31 1 3.7628 -3.0715 4.3528 32 1 -0.3633 0.4787 0.9094 33 1 -0.3633 0.5481 -0.8693 34 1 -0.3634 -1.0269 -0.0401 35 1 1.3222 -0.7869 -2.0206 36 1 2.9937 -0.3228 -1.5806 37 1 2.4041 -6.1803 -3.3382 38 1 1.0119 -6.1185 -2.2262 39 1 0.6448 -8.5322 -3.1666 40 1 0.2542 -8.7184 -4.8934 41 1 1.9123 -8.3059 -4.3955 42 1 1.8819 -6.1412 -5.8256 43 1 0.3423 -6.8257 -6.3966 44 1 -0.8600 -4.7833 -5.8402 45 1 0.5945 -4.3143 -6.7582 46 1 3.9354 -1.6771 0.5663 47 1 2.7495 -2.8401 1.2353 48 1 2.4265 1.0361 2.3387 49 1 3.8561 0.3969 1.4924 50 1 3.0601 -1.4859 3.4410 51 1 5.6141 -0.5230 7.0345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106824539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:06 Heat of formation + Delta-G solvation = 31.026872 kcal Electronic energy + Delta-G solvation = -31143.977801 eV Core-core repulsion = 27046.476447 eV Total energy + Delta-G solvation = -4097.501354 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.37415 -40.14544 -38.65934 -37.97338 -34.88476 -34.19707 -32.88771 -32.71930 -31.53276 -30.74403 -29.49731 -27.64945 -26.66388 -26.20680 -24.38297 -23.81551 -22.73139 -22.37117 -21.15608 -20.27417 -19.91753 -19.32018 -18.10232 -17.72925 -17.29017 -16.87076 -15.92041 -15.67917 -15.45278 -14.81520 -14.65697 -14.43283 -14.32824 -14.20892 -13.81416 -13.75021 -13.55790 -13.36487 -13.25002 -13.14471 -12.73555 -12.57192 -12.46566 -12.37284 -12.13591 -11.93198 -11.59690 -11.55400 -11.42415 -11.26364 -11.13736 -10.96039 -10.91802 -10.63726 -10.56449 -10.50448 -10.31732 -10.22196 -10.08579 -9.57928 -9.42970 -8.90672 -8.77941 -7.23721 -5.76232 -3.12117 0.85158 1.38732 2.48953 2.70879 3.02129 3.39963 3.43796 3.47788 3.67167 4.04627 4.16686 4.26055 4.47729 4.53314 4.55923 4.60725 4.66009 4.76239 4.83799 4.87484 4.92538 5.01955 5.18364 5.25763 5.28583 5.32945 5.35180 5.38316 5.42602 5.47114 5.51470 5.53637 5.55308 5.62602 5.68801 5.72472 5.77456 5.79607 5.91408 5.92470 5.94834 6.02105 6.08829 6.09616 6.18603 6.40050 6.61275 6.71877 7.37323 7.66947 7.96578 7.99109 8.42583 9.21239 9.93785 10.13030 11.42045 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002502 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.911839 B =11189.373278 C =12543.491985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.093 0.907 4 C 0.096 3.904 5 N -0.606 5.606 6 C 0.614 3.386 7 O -0.523 6.523 8 C -0.006 4.006 9 N -0.334 5.334 10 O 0.123 5.877 11 C -0.038 4.038 12 C -0.152 4.152 13 C -0.040 4.040 14 C -0.096 4.096 15 H 0.076 0.924 16 C -0.147 4.147 17 C -0.114 4.114 18 C -0.034 4.034 19 C 0.114 3.886 20 C -0.108 4.108 21 H 0.083 0.917 22 C 0.168 3.832 23 N -0.757 5.757 24 C -0.245 4.245 25 H 0.090 0.910 26 C 0.005 3.995 27 N -0.934 5.934 28 Si 0.883 3.117 29 H -0.284 1.284 30 H -0.290 1.290 31 H -0.276 1.276 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.033 0.967 49 H 0.030 0.970 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 -10.723 -29.720 34.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.111 0.889 4 C -0.027 4.027 5 N -0.339 5.339 6 C 0.400 3.600 7 O -0.397 6.397 8 C -0.164 4.164 9 N -0.038 5.038 10 O 0.051 5.949 11 C -0.102 4.102 12 C -0.157 4.157 13 C -0.078 4.078 14 C -0.114 4.114 15 H 0.094 0.906 16 C -0.204 4.204 17 C -0.152 4.152 18 C -0.072 4.072 19 C -0.008 4.008 20 C -0.128 4.128 21 H 0.101 0.899 22 C 0.040 3.960 23 N -0.402 5.402 24 C -0.374 4.374 25 H 0.108 0.892 26 C -0.191 4.191 27 N -0.582 5.582 28 Si 0.713 3.287 29 H -0.211 1.211 30 H -0.217 1.217 31 H -0.202 1.202 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.114 0.886 45 H 0.112 0.888 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.051 0.949 49 H 0.048 0.952 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.416 -9.900 -29.083 33.524 hybrid contribution -0.224 -1.756 0.520 1.845 sum -13.640 -11.656 -28.563 33.731 Atomic orbital electron populations 1.21817 0.94387 1.01588 1.01933 1.22109 0.96283 0.99869 0.93653 0.88867 1.22801 1.01629 0.80776 0.97500 1.48828 1.61473 1.05422 1.18192 1.16385 0.78386 0.82925 0.82332 1.90807 1.52853 1.30271 1.65813 1.22964 1.05562 0.90098 0.97772 1.74581 1.13206 1.22743 0.93227 1.84689 1.59352 1.22653 1.28166 1.24122 1.03511 0.83228 0.99381 1.20653 1.04206 0.97824 0.92996 1.20079 1.01138 0.86239 1.00324 1.21324 1.00315 0.95500 0.94298 0.90588 1.21807 1.01848 0.94498 1.02259 1.21772 1.02020 0.93989 0.97400 1.20302 1.01651 0.92530 0.92763 1.22571 0.97921 0.99273 0.80999 1.22473 0.98866 0.95519 0.95919 0.89861 1.20707 0.94806 0.93416 0.87030 1.42735 1.60473 1.15446 1.21589 1.19039 1.21184 0.99461 0.97761 0.89177 1.24671 0.99608 0.97880 0.96921 1.69702 1.39479 1.37315 1.11662 0.86575 0.78302 0.86043 0.77804 1.21073 1.21675 1.20205 0.91943 0.92604 0.93113 0.88461 0.90750 0.89759 0.89200 0.92170 0.92351 0.92348 0.90898 0.89940 0.88602 0.88835 0.89787 0.89813 0.94917 0.95191 0.80644 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.90 37.16 0.33 -1.24 16 2 C -0.10 -1.23 3.31 -89.22 -0.30 -1.52 16 3 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16 4 C 0.10 1.20 6.25 -2.41 -0.02 1.18 16 5 N -0.61 -9.08 3.32 -170.24 -0.56 -9.65 16 6 C 0.61 9.76 7.94 -12.11 -0.10 9.67 16 7 O -0.52 -9.60 16.35 5.37 0.09 -9.51 16 8 C -0.01 -0.08 7.04 -82.82 -0.58 -0.66 16 9 N -0.33 -4.11 9.31 33.29 0.31 -3.80 16 10 O 0.12 1.27 11.18 19.20 0.21 1.48 16 11 C -0.04 -0.33 7.38 -35.38 -0.26 -0.59 16 12 C -0.15 -1.66 6.04 -104.91 -0.63 -2.30 16 13 C -0.04 -0.38 4.97 -27.91 -0.14 -0.52 16 14 C -0.10 -0.58 2.70 -90.28 -0.24 -0.83 16 15 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 16 C -0.15 -0.77 9.16 37.16 0.34 -0.43 16 17 C -0.11 -0.50 5.20 -26.36 -0.14 -0.64 16 18 C -0.03 -0.16 6.31 -27.61 -0.17 -0.33 16 19 C 0.11 1.85 6.41 -2.41 -0.02 1.83 16 20 C -0.11 -1.66 2.75 -89.22 -0.25 -1.91 16 21 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16 22 C 0.17 3.14 5.38 -4.04 -0.02 3.12 16 23 N -0.76 -17.97 5.28 -59.91 -0.32 -18.28 16 24 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16 25 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 26 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 27 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 28 Si 0.88 22.60 27.73 -169.99 -4.71 17.89 16 29 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 30 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 31 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.10 1.18 5.29 -51.93 -0.27 0.90 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 38 H 0.09 0.99 7.83 -51.93 -0.41 0.58 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 42 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 43 H 0.08 0.21 8.11 -51.93 -0.42 -0.21 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16 47 H 0.08 1.49 7.88 -51.93 -0.41 1.08 16 48 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 49 H 0.03 0.57 7.98 -51.93 -0.41 0.15 16 50 H 0.36 8.48 5.47 -40.82 -0.22 8.26 16 51 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -34.05 401.47 -9.04 -43.08 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.44 Total: 3.83 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.44 Total: -2.23 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.20 Total: -60.59 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.30 Total: -8.03 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.05 -9.04 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106824539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.112 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds