Wall clock time and date at job start Wed Apr 1 2020 05:23:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 110.39175 * 2 1
4 4 C 1.54393 * 110.34062 * 237.77135 * 2 1 3
5 5 N 1.48138 * 104.61716 * 264.99559 * 4 2 1
6 6 C 1.34781 * 127.83911 * 140.39537 * 5 4 2
7 7 O 1.21495 * 120.00203 * 179.97438 * 6 5 4
8 8 C 1.48325 * 119.99803 * 359.97438 * 6 5 4
9 9 N 1.31499 * 127.15620 * 0.02562 * 8 6 5
10 10 O 1.21436 * 111.52623 * 179.97438 * 9 8 6
11 11 C 1.33185 * 111.56985 * 359.96672 * 10 9 8
12 12 C 1.35377 * 106.63549 * 359.83777 * 11 10 9
13 13 C 1.50067 * 124.93995 * 180.02562 * 12 11 10
14 14 C 1.53546 * 108.22563 * 344.07936 * 13 12 11
15 15 H 1.09002 * 109.46691 * 289.19315 * 14 13 12
16 16 C 1.53001 * 109.46354 * 169.21058 * 14 13 12
17 17 C 1.53110 * 109.50607 * 49.20798 * 14 13 12
18 18 C 1.50599 * 129.60373 * 180.19502 * 11 10 9
19 19 C 1.48144 * 104.32696 * 320.41368 * 5 4 2
20 20 C 1.54281 * 110.34236 * 122.23499 * 2 1 3
21 21 H 1.08997 * 110.34401 * 359.89308 * 20 2 1
22 22 C 1.53004 * 110.34260 * 237.73741 * 20 2 1
23 23 N 1.46499 * 109.46939 * 175.00071 * 22 20 2
24 24 C 1.36932 * 119.99549 * 180.02562 * 23 22 20
25 25 H 1.08003 * 120.00354 * 0.02562 * 24 23 22
26 26 C 1.38817 * 120.00011 * 179.97438 * 24 23 22
27 27 N 1.31619 * 120.00154 * 180.02562 * 26 24 23
28 28 Si 1.86798 * 119.99635 * 0.02562 * 26 24 23
29 29 H 1.48506 * 109.47297 * 269.99668 * 28 26 24
30 30 H 1.48503 * 109.47261 * 149.99848 * 28 26 24
31 31 H 1.48500 * 109.47454 * 29.99841 * 28 26 24
32 32 H 1.09003 * 109.47143 * 297.76537 * 1 2 3
33 33 H 1.08998 * 109.47158 * 57.76800 * 1 2 3
34 34 H 1.09001 * 109.47268 * 177.76260 * 1 2 3
35 35 H 1.09003 * 110.40475 * 23.78075 * 4 2 1
36 36 H 1.08996 * 110.40415 * 146.09401 * 4 2 1
37 37 H 1.08999 * 109.71235 * 103.76285 * 13 12 11
38 38 H 1.08999 * 109.71232 * 224.39092 * 13 12 11
39 39 H 1.08995 * 109.47353 * 59.99663 * 16 14 13
40 40 H 1.09001 * 109.47263 * 180.02562 * 16 14 13
41 41 H 1.09001 * 109.47240 * 299.99950 * 16 14 13
42 42 H 1.08998 * 109.42660 * 50.21449 * 17 14 13
43 43 H 1.08997 * 109.42816 * 170.06134 * 17 14 13
44 44 H 1.08998 * 109.69338 * 282.93156 * 18 11 10
45 45 H 1.09000 * 109.69417 * 43.51706 * 18 11 10
46 46 H 1.08999 * 110.41184 * 280.80318 * 19 5 4
47 47 H 1.09004 * 110.40868 * 158.36978 * 19 5 4
48 48 H 1.09008 * 109.46680 * 55.00381 * 22 20 2
49 49 H 1.08994 * 109.47425 * 295.00309 * 22 20 2
50 50 H 0.96993 * 120.00302 * 0.02562 * 23 22 20
51 51 H 0.96998 * 119.99442 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9098 1.0216 0.0000
4 6 2.0667 -0.7720 -1.2246
5 7 2.3139 -2.1437 -0.7228
6 6 2.0769 -3.3105 -1.3546
7 8 2.3365 -4.3625 -0.8052
8 6 1.4992 -3.3100 -2.7208
9 7 1.1674 -2.2621 -3.4424
10 8 0.7193 -2.5888 -4.5228
11 6 0.6951 -3.9131 -4.6626
12 6 1.1967 -4.4329 -3.5177
13 6 1.3561 -5.8984 -3.2367
14 6 0.5094 -6.6772 -4.2536
15 1 -0.5480 -6.5369 -4.0290
16 6 0.8549 -8.1654 -4.1712
17 6 0.8040 -6.1625 -5.6651
18 6 0.2293 -4.7471 -5.8268
19 6 2.8802 -1.9423 0.6312
20 6 2.0663 -0.7716 1.2236
21 1 1.2398 -1.1490 1.8257
22 6 2.9693 0.1305 2.0674
23 7 3.3711 -0.5808 3.2834
24 6 4.1857 0.0322 4.1975
25 1 4.5317 1.0402 4.0223
26 6 4.5661 -0.6416 5.3501
27 7 5.3487 -0.0522 6.2290
28 14 3.9671 -2.3847 5.6535
29 1 2.6833 -2.3444 6.3990
30 1 4.9790 -3.1242 6.4502
31 1 3.7628 -3.0715 4.3528
32 1 -0.3633 0.4787 0.9094
33 1 -0.3633 0.5481 -0.8693
34 1 -0.3634 -1.0269 -0.0401
35 1 1.3222 -0.7869 -2.0206
36 1 2.9937 -0.3228 -1.5806
37 1 2.4041 -6.1803 -3.3382
38 1 1.0119 -6.1185 -2.2262
39 1 0.6448 -8.5322 -3.1666
40 1 0.2542 -8.7184 -4.8934
41 1 1.9123 -8.3059 -4.3955
42 1 1.8819 -6.1412 -5.8256
43 1 0.3423 -6.8257 -6.3966
44 1 -0.8600 -4.7833 -5.8402
45 1 0.5945 -4.3143 -6.7582
46 1 3.9354 -1.6771 0.5663
47 1 2.7495 -2.8401 1.2353
48 1 2.4265 1.0361 2.3387
49 1 3.8561 0.3969 1.4924
50 1 3.0601 -1.4859 3.4410
51 1 5.6141 -0.5230 7.0345
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001106824539.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:23:06
Heat of formation + Delta-G solvation = 31.026872 kcal
Electronic energy + Delta-G solvation = -31143.977801 eV
Core-core repulsion = 27046.476447 eV
Total energy + Delta-G solvation = -4097.501354 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-45.37415 -40.14544 -38.65934 -37.97338 -34.88476 -34.19707 -32.88771 -32.71930
-31.53276 -30.74403 -29.49731 -27.64945 -26.66388 -26.20680 -24.38297 -23.81551
-22.73139 -22.37117 -21.15608 -20.27417 -19.91753 -19.32018 -18.10232 -17.72925
-17.29017 -16.87076 -15.92041 -15.67917 -15.45278 -14.81520 -14.65697 -14.43283
-14.32824 -14.20892 -13.81416 -13.75021 -13.55790 -13.36487 -13.25002 -13.14471
-12.73555 -12.57192 -12.46566 -12.37284 -12.13591 -11.93198 -11.59690 -11.55400
-11.42415 -11.26364 -11.13736 -10.96039 -10.91802 -10.63726 -10.56449 -10.50448
-10.31732 -10.22196 -10.08579 -9.57928 -9.42970 -8.90672 -8.77941 -7.23721
-5.76232 -3.12117 0.85158 1.38732 2.48953 2.70879 3.02129 3.39963
3.43796 3.47788 3.67167 4.04627 4.16686 4.26055 4.47729 4.53314
4.55923 4.60725 4.66009 4.76239 4.83799 4.87484 4.92538 5.01955
5.18364 5.25763 5.28583 5.32945 5.35180 5.38316 5.42602 5.47114
5.51470 5.53637 5.55308 5.62602 5.68801 5.72472 5.77456 5.79607
5.91408 5.92470 5.94834 6.02105 6.08829 6.09616 6.18603 6.40050
6.61275 6.71877 7.37323 7.66947 7.96578 7.99109 8.42583 9.21239
9.93785 10.13030 11.42045
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016015 B = 0.002502 C = 0.002232
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1747.911839 B =11189.373278 C =12543.491985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.099 4.099
3 H 0.093 0.907
4 C 0.096 3.904
5 N -0.606 5.606
6 C 0.614 3.386
7 O -0.523 6.523
8 C -0.006 4.006
9 N -0.334 5.334
10 O 0.123 5.877
11 C -0.038 4.038
12 C -0.152 4.152
13 C -0.040 4.040
14 C -0.096 4.096
15 H 0.076 0.924
16 C -0.147 4.147
17 C -0.114 4.114
18 C -0.034 4.034
19 C 0.114 3.886
20 C -0.108 4.108
21 H 0.083 0.917
22 C 0.168 3.832
23 N -0.757 5.757
24 C -0.245 4.245
25 H 0.090 0.910
26 C 0.005 3.995
27 N -0.934 5.934
28 Si 0.883 3.117
29 H -0.284 1.284
30 H -0.290 1.290
31 H -0.276 1.276
32 H 0.062 0.938
33 H 0.055 0.945
34 H 0.050 0.950
35 H 0.097 0.903
36 H 0.074 0.926
37 H 0.084 0.916
38 H 0.090 0.910
39 H 0.059 0.941
40 H 0.057 0.943
41 H 0.057 0.943
42 H 0.072 0.928
43 H 0.082 0.918
44 H 0.096 0.904
45 H 0.093 0.907
46 H 0.084 0.916
47 H 0.083 0.917
48 H 0.033 0.967
49 H 0.030 0.970
50 H 0.361 0.639
51 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.780 -10.723 -29.720 34.469
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.119 4.119
3 H 0.111 0.889
4 C -0.027 4.027
5 N -0.339 5.339
6 C 0.400 3.600
7 O -0.397 6.397
8 C -0.164 4.164
9 N -0.038 5.038
10 O 0.051 5.949
11 C -0.102 4.102
12 C -0.157 4.157
13 C -0.078 4.078
14 C -0.114 4.114
15 H 0.094 0.906
16 C -0.204 4.204
17 C -0.152 4.152
18 C -0.072 4.072
19 C -0.008 4.008
20 C -0.128 4.128
21 H 0.101 0.899
22 C 0.040 3.960
23 N -0.402 5.402
24 C -0.374 4.374
25 H 0.108 0.892
26 C -0.191 4.191
27 N -0.582 5.582
28 Si 0.713 3.287
29 H -0.211 1.211
30 H -0.217 1.217
31 H -0.202 1.202
32 H 0.081 0.919
33 H 0.074 0.926
34 H 0.069 0.931
35 H 0.115 0.885
36 H 0.092 0.908
37 H 0.102 0.898
38 H 0.108 0.892
39 H 0.078 0.922
40 H 0.076 0.924
41 H 0.077 0.923
42 H 0.091 0.909
43 H 0.101 0.899
44 H 0.114 0.886
45 H 0.112 0.888
46 H 0.102 0.898
47 H 0.102 0.898
48 H 0.051 0.949
49 H 0.048 0.952
50 H 0.194 0.806
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -13.416 -9.900 -29.083 33.524
hybrid contribution -0.224 -1.756 0.520 1.845
sum -13.640 -11.656 -28.563 33.731
Atomic orbital electron populations
1.21817 0.94387 1.01588 1.01933 1.22109 0.96283 0.99869 0.93653
0.88867 1.22801 1.01629 0.80776 0.97500 1.48828 1.61473 1.05422
1.18192 1.16385 0.78386 0.82925 0.82332 1.90807 1.52853 1.30271
1.65813 1.22964 1.05562 0.90098 0.97772 1.74581 1.13206 1.22743
0.93227 1.84689 1.59352 1.22653 1.28166 1.24122 1.03511 0.83228
0.99381 1.20653 1.04206 0.97824 0.92996 1.20079 1.01138 0.86239
1.00324 1.21324 1.00315 0.95500 0.94298 0.90588 1.21807 1.01848
0.94498 1.02259 1.21772 1.02020 0.93989 0.97400 1.20302 1.01651
0.92530 0.92763 1.22571 0.97921 0.99273 0.80999 1.22473 0.98866
0.95519 0.95919 0.89861 1.20707 0.94806 0.93416 0.87030 1.42735
1.60473 1.15446 1.21589 1.19039 1.21184 0.99461 0.97761 0.89177
1.24671 0.99608 0.97880 0.96921 1.69702 1.39479 1.37315 1.11662
0.86575 0.78302 0.86043 0.77804 1.21073 1.21675 1.20205 0.91943
0.92604 0.93113 0.88461 0.90750 0.89759 0.89200 0.92170 0.92351
0.92348 0.90898 0.89940 0.88602 0.88835 0.89787 0.89813 0.94917
0.95191 0.80644 0.93053
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.57 8.90 37.16 0.33 -1.24 16
2 C -0.10 -1.23 3.31 -89.22 -0.30 -1.52 16
3 H 0.09 1.06 7.71 -51.93 -0.40 0.66 16
4 C 0.10 1.20 6.25 -2.41 -0.02 1.18 16
5 N -0.61 -9.08 3.32 -170.24 -0.56 -9.65 16
6 C 0.61 9.76 7.94 -12.11 -0.10 9.67 16
7 O -0.52 -9.60 16.35 5.37 0.09 -9.51 16
8 C -0.01 -0.08 7.04 -82.82 -0.58 -0.66 16
9 N -0.33 -4.11 9.31 33.29 0.31 -3.80 16
10 O 0.12 1.27 11.18 19.20 0.21 1.48 16
11 C -0.04 -0.33 7.38 -35.38 -0.26 -0.59 16
12 C -0.15 -1.66 6.04 -104.91 -0.63 -2.30 16
13 C -0.04 -0.38 4.97 -27.91 -0.14 -0.52 16
14 C -0.10 -0.58 2.70 -90.28 -0.24 -0.83 16
15 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16
16 C -0.15 -0.77 9.16 37.16 0.34 -0.43 16
17 C -0.11 -0.50 5.20 -26.36 -0.14 -0.64 16
18 C -0.03 -0.16 6.31 -27.61 -0.17 -0.33 16
19 C 0.11 1.85 6.41 -2.41 -0.02 1.83 16
20 C -0.11 -1.66 2.75 -89.22 -0.25 -1.91 16
21 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16
22 C 0.17 3.14 5.38 -4.04 -0.02 3.12 16
23 N -0.76 -17.97 5.28 -59.91 -0.32 -18.28 16
24 C -0.24 -6.96 10.47 -15.06 -0.16 -7.12 16
25 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16
26 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16
27 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16
28 Si 0.88 22.60 27.73 -169.99 -4.71 17.89 16
29 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16
30 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16
31 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16
32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
34 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16
35 H 0.10 1.18 5.29 -51.93 -0.27 0.90 16
36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
37 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16
38 H 0.09 0.99 7.83 -51.93 -0.41 0.58 16
39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
40 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16
41 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
42 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16
43 H 0.08 0.21 8.11 -51.93 -0.42 -0.21 16
44 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16
45 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16
46 H 0.08 1.41 7.75 -51.93 -0.40 1.00 16
47 H 0.08 1.49 7.88 -51.93 -0.41 1.08 16
48 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16
49 H 0.03 0.57 7.98 -51.93 -0.41 0.15 16
50 H 0.36 8.48 5.47 -40.82 -0.22 8.26 16
51 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16
LS Contribution 401.47 15.07 6.05 6.05
Total: -1.00 -34.05 401.47 -9.04 -43.08
By element:
Atomic # 1 Polarization: 12.27 SS G_CDS: -8.44 Total: 3.83 kcal
Atomic # 6 Polarization: 0.21 SS G_CDS: -2.44 Total: -2.23 kcal
Atomic # 7 Polarization: -60.80 SS G_CDS: 0.20 Total: -60.59 kcal
Atomic # 8 Polarization: -8.33 SS G_CDS: 0.30 Total: -8.03 kcal
Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal
Total LS contribution 6.05 Total: 6.05 kcal
Total: -34.05 -9.04 -43.08 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001106824539.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.112 kcal
(2) G-P(sol) polarization free energy of solvation -34.048 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds