Wall clock time and date at job start Wed Apr 1 2020 05:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.39175 * 2 1 4 4 C 1.54393 * 110.34062 * 237.77135 * 2 1 3 5 5 N 1.48138 * 104.61716 * 264.99559 * 4 2 1 6 6 C 1.34781 * 127.83911 * 140.39537 * 5 4 2 7 7 O 1.21495 * 120.00203 * 179.97438 * 6 5 4 8 8 C 1.48325 * 119.99803 * 359.97438 * 6 5 4 9 9 N 1.31499 * 127.15620 * 0.02562 * 8 6 5 10 10 O 1.21436 * 111.52623 * 179.97438 * 9 8 6 11 11 C 1.33185 * 111.56985 * 359.96672 * 10 9 8 12 12 C 1.35377 * 106.63549 * 359.83777 * 11 10 9 13 13 C 1.50067 * 124.93995 * 180.02562 * 12 11 10 14 14 C 1.53546 * 108.22563 * 344.07936 * 13 12 11 15 15 H 1.09002 * 109.46691 * 289.19315 * 14 13 12 16 16 C 1.53001 * 109.46354 * 169.21058 * 14 13 12 17 17 C 1.53110 * 109.50607 * 49.20798 * 14 13 12 18 18 C 1.50599 * 129.60373 * 180.19502 * 11 10 9 19 19 C 1.48144 * 104.32696 * 320.41368 * 5 4 2 20 20 C 1.54281 * 110.34236 * 122.23499 * 2 1 3 21 21 H 1.08997 * 110.34401 * 359.89308 * 20 2 1 22 22 C 1.53004 * 110.34260 * 237.73741 * 20 2 1 23 23 N 1.46499 * 109.46939 * 175.00071 * 22 20 2 24 24 C 1.36932 * 119.99549 * 180.02562 * 23 22 20 25 25 H 1.08003 * 120.00354 * 0.02562 * 24 23 22 26 26 C 1.38817 * 120.00011 * 179.97438 * 24 23 22 27 27 N 1.31619 * 120.00154 * 180.02562 * 26 24 23 28 28 Si 1.86798 * 119.99635 * 0.02562 * 26 24 23 29 29 H 1.48506 * 109.47297 * 269.99668 * 28 26 24 30 30 H 1.48503 * 109.47261 * 149.99848 * 28 26 24 31 31 H 1.48500 * 109.47454 * 29.99841 * 28 26 24 32 32 H 1.09003 * 109.47143 * 297.76537 * 1 2 3 33 33 H 1.08998 * 109.47158 * 57.76800 * 1 2 3 34 34 H 1.09001 * 109.47268 * 177.76260 * 1 2 3 35 35 H 1.09003 * 110.40475 * 23.78075 * 4 2 1 36 36 H 1.08996 * 110.40415 * 146.09401 * 4 2 1 37 37 H 1.08999 * 109.71235 * 103.76285 * 13 12 11 38 38 H 1.08999 * 109.71232 * 224.39092 * 13 12 11 39 39 H 1.08995 * 109.47353 * 59.99663 * 16 14 13 40 40 H 1.09001 * 109.47263 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.47240 * 299.99950 * 16 14 13 42 42 H 1.08998 * 109.42660 * 50.21449 * 17 14 13 43 43 H 1.08997 * 109.42816 * 170.06134 * 17 14 13 44 44 H 1.08998 * 109.69338 * 282.93156 * 18 11 10 45 45 H 1.09000 * 109.69417 * 43.51706 * 18 11 10 46 46 H 1.08999 * 110.41184 * 280.80318 * 19 5 4 47 47 H 1.09004 * 110.40868 * 158.36978 * 19 5 4 48 48 H 1.09008 * 109.46680 * 55.00381 * 22 20 2 49 49 H 1.08994 * 109.47425 * 295.00309 * 22 20 2 50 50 H 0.96993 * 120.00302 * 0.02562 * 23 22 20 51 51 H 0.96998 * 119.99442 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3139 -2.1437 -0.7228 6 6 2.0769 -3.3105 -1.3546 7 8 2.3365 -4.3625 -0.8052 8 6 1.4992 -3.3100 -2.7208 9 7 1.1674 -2.2621 -3.4424 10 8 0.7193 -2.5888 -4.5228 11 6 0.6951 -3.9131 -4.6626 12 6 1.1967 -4.4329 -3.5177 13 6 1.3561 -5.8984 -3.2367 14 6 0.5094 -6.6772 -4.2536 15 1 -0.5480 -6.5369 -4.0290 16 6 0.8549 -8.1654 -4.1712 17 6 0.8040 -6.1625 -5.6651 18 6 0.2293 -4.7471 -5.8268 19 6 2.8802 -1.9423 0.6312 20 6 2.0663 -0.7716 1.2236 21 1 1.2398 -1.1490 1.8257 22 6 2.9693 0.1305 2.0674 23 7 3.3711 -0.5808 3.2834 24 6 4.1857 0.0322 4.1975 25 1 4.5317 1.0402 4.0223 26 6 4.5661 -0.6416 5.3501 27 7 5.3487 -0.0522 6.2290 28 14 3.9671 -2.3847 5.6535 29 1 2.6833 -2.3444 6.3990 30 1 4.9790 -3.1242 6.4502 31 1 3.7628 -3.0715 4.3528 32 1 -0.3633 0.4787 0.9094 33 1 -0.3633 0.5481 -0.8693 34 1 -0.3634 -1.0269 -0.0401 35 1 1.3222 -0.7869 -2.0206 36 1 2.9937 -0.3228 -1.5806 37 1 2.4041 -6.1803 -3.3382 38 1 1.0119 -6.1185 -2.2262 39 1 0.6448 -8.5322 -3.1666 40 1 0.2542 -8.7184 -4.8934 41 1 1.9123 -8.3059 -4.3955 42 1 1.8819 -6.1412 -5.8256 43 1 0.3423 -6.8257 -6.3966 44 1 -0.8600 -4.7833 -5.8402 45 1 0.5945 -4.3143 -6.7582 46 1 3.9354 -1.6771 0.5663 47 1 2.7495 -2.8401 1.2353 48 1 2.4265 1.0361 2.3387 49 1 3.8561 0.3969 1.4924 50 1 3.0601 -1.4859 3.4410 51 1 5.6141 -0.5230 7.0345 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106824539.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:05 Heat of formation + Delta-G solvation = 10.463935 kcal Electronic energy + Delta-G solvation = -31144.869477 eV Core-core repulsion = 27046.476447 eV Total energy + Delta-G solvation = -4098.393030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.24262 -41.35858 -39.47447 -38.97298 -36.67150 -35.15905 -34.15100 -33.41728 -33.31150 -31.48774 -30.93986 -28.43001 -27.69154 -27.56472 -25.52213 -24.65086 -24.12988 -23.09437 -22.61423 -21.20220 -21.04689 -20.23087 -19.60105 -18.96943 -18.26802 -17.93704 -17.22595 -16.82239 -16.56813 -16.12496 -15.90940 -15.65699 -15.26659 -15.07615 -14.88248 -14.80229 -14.60089 -14.36313 -14.33111 -14.15238 -13.93624 -13.77712 -13.64370 -13.44453 -13.11014 -12.99637 -12.84471 -12.67550 -12.55997 -12.27352 -12.14167 -11.94166 -11.89527 -11.86856 -11.77318 -11.68949 -11.58548 -11.52444 -11.33730 -11.25546 -11.01440 -10.16128 -10.00398 -9.32932 -8.05779 -5.38687 -0.08054 0.56619 1.34943 1.36272 1.43251 1.47217 1.86782 1.90247 2.44293 2.67694 3.23229 3.27298 3.40898 3.47927 3.52942 3.69435 3.79276 3.87256 3.90576 3.99664 4.11112 4.17449 4.18817 4.22027 4.36808 4.41654 4.43527 4.52248 4.57734 4.70015 4.71219 4.73905 4.74841 4.75149 4.84359 4.94394 4.95857 4.98179 4.99880 5.09128 5.11465 5.15892 5.18192 5.18520 5.30595 5.38100 5.40723 5.49849 5.73499 6.18036 6.19729 6.63588 6.94816 7.04517 7.80846 7.98258 9.15632 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002502 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.911839 B =11189.373278 C =12543.491985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 H 0.111 0.889 4 C 0.098 3.902 5 N -0.607 5.607 6 C 0.607 3.393 7 O -0.560 6.560 8 C -0.033 4.033 9 N -0.342 5.342 10 O 0.135 5.865 11 C -0.014 4.014 12 C -0.175 4.175 13 C -0.039 4.039 14 C -0.091 4.091 15 H 0.079 0.921 16 C -0.146 4.146 17 C -0.111 4.111 18 C -0.033 4.033 19 C 0.114 3.886 20 C -0.096 4.096 21 H 0.080 0.920 22 C 0.167 3.833 23 N -0.761 5.761 24 C -0.230 4.230 25 H 0.063 0.937 26 C -0.061 4.061 27 N -0.981 5.981 28 Si 0.948 3.052 29 H -0.277 1.277 30 H -0.295 1.295 31 H -0.259 1.259 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.056 0.944 42 H 0.068 0.932 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.033 0.967 50 H 0.363 0.637 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.095 -11.431 -33.410 38.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.129 0.871 4 C -0.024 4.024 5 N -0.339 5.339 6 C 0.395 3.605 7 O -0.437 6.437 8 C -0.189 4.189 9 N -0.045 5.045 10 O 0.061 5.939 11 C -0.079 4.079 12 C -0.180 4.180 13 C -0.077 4.077 14 C -0.109 4.109 15 H 0.098 0.902 16 C -0.203 4.203 17 C -0.148 4.148 18 C -0.071 4.071 19 C -0.008 4.008 20 C -0.116 4.116 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.406 5.406 24 C -0.361 4.361 25 H 0.081 0.919 26 C -0.253 4.253 27 N -0.632 5.632 28 Si 0.776 3.224 29 H -0.203 1.203 30 H -0.222 1.222 31 H -0.184 1.184 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.196 0.804 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.758 -10.577 -32.814 37.907 hybrid contribution 0.498 -1.459 1.556 2.191 sum -15.260 -12.036 -31.257 36.807 Atomic orbital electron populations 1.21783 0.93181 1.01190 1.03086 1.22117 0.97194 1.00131 0.91609 0.87115 1.22941 1.02420 0.79302 0.97721 1.48892 1.61021 1.06330 1.17655 1.16797 0.77929 0.82545 0.83239 1.90771 1.54471 1.31509 1.66984 1.22779 1.07292 0.91714 0.97120 1.74531 1.13594 1.22587 0.93739 1.84660 1.58428 1.23664 1.27177 1.24868 1.01021 0.82336 0.99662 1.20900 1.05419 0.97985 0.93734 1.20069 1.01166 0.86281 1.00159 1.21313 0.99640 0.95391 0.94567 0.90210 1.21804 1.02131 0.94193 1.02168 1.21804 1.02144 0.94381 0.96496 1.20653 1.03090 0.91565 0.91788 1.22426 0.97838 0.98713 0.81825 1.22307 0.97798 0.94906 0.96560 0.90201 1.20871 0.95530 0.93890 0.85607 1.42789 1.59789 1.15705 1.22351 1.19047 1.20475 0.98365 0.98257 0.91933 1.25431 1.00548 1.02205 0.97083 1.69865 1.41641 1.39225 1.12462 0.85514 0.77660 0.81028 0.78225 1.20305 1.22154 1.18436 0.91677 0.90496 0.94358 0.87606 0.89782 0.90841 0.91915 0.93390 0.90367 0.92533 0.91356 0.86967 0.86153 0.86187 0.90524 0.91898 0.94215 0.94879 0.80406 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.90 71.98 0.64 -2.10 16 2 C -0.09 -2.07 3.31 -9.89 -0.03 -2.10 16 3 H 0.11 2.20 7.71 -2.39 -0.02 2.18 16 4 C 0.10 2.32 6.25 86.54 0.54 2.86 16 5 N -0.61 -18.29 3.32 -810.80 -2.69 -20.98 16 6 C 0.61 19.94 7.94 86.93 0.69 20.63 16 7 O -0.56 -21.73 16.35 -3.70 -0.06 -21.79 16 8 C -0.03 -0.89 7.04 42.55 0.30 -0.59 16 9 N -0.34 -8.00 9.31 -48.94 -0.46 -8.46 16 10 O 0.13 2.46 11.18 78.73 0.88 3.34 16 11 C -0.01 -0.21 7.38 24.99 0.18 -0.03 16 12 C -0.17 -3.75 6.04 -20.05 -0.12 -3.87 16 13 C -0.04 -0.75 4.97 29.83 0.15 -0.60 16 14 C -0.09 -0.95 2.70 -10.57 -0.03 -0.97 16 15 H 0.08 0.79 8.12 -2.39 -0.02 0.77 16 16 C -0.15 -1.33 9.16 71.98 0.66 -0.67 16 17 C -0.11 -0.57 5.20 30.84 0.16 -0.41 16 18 C -0.03 -0.16 6.31 30.02 0.19 0.03 16 19 C 0.11 3.75 6.41 86.54 0.55 4.30 16 20 C -0.10 -2.88 2.75 -9.88 -0.03 -2.90 16 21 H 0.08 2.48 7.71 -2.39 -0.02 2.47 16 22 C 0.17 6.14 5.38 86.38 0.46 6.60 16 23 N -0.76 -35.97 5.28 -343.44 -1.81 -37.79 16 24 C -0.23 -13.30 10.47 84.04 0.88 -12.42 16 25 H 0.06 3.90 8.06 -2.91 -0.02 3.87 16 26 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 27 N -0.98 -63.83 13.97 21.65 0.30 -63.53 16 28 Si 0.95 47.30 27.73 68.60 1.90 49.20 16 29 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 30 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 31 H -0.26 -12.06 6.52 99.48 0.65 -11.42 16 32 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.11 2.38 5.29 -2.39 -0.01 2.36 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 38 H 0.06 1.51 7.83 -2.39 -0.02 1.49 16 39 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.07 0.46 8.12 -2.39 -0.02 0.44 16 43 H 0.11 0.02 8.11 -2.39 -0.02 0.00 16 44 H 0.12 0.13 8.14 -2.39 -0.02 0.12 16 45 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 46 H 0.08 2.61 7.75 -2.39 -0.02 2.59 16 47 H 0.06 2.31 7.88 -2.38 -0.02 2.30 16 48 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 49 H 0.03 1.22 7.98 -2.39 -0.02 1.20 16 50 H 0.36 16.84 5.47 -92.71 -0.51 16.34 16 51 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -76.89 401.47 4.10 -72.79 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.36 Total: 22.66 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 5.67 Total: 4.55 kcal Atomic # 7 Polarization: -126.10 SS G_CDS: -4.66 Total: -130.75 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: 0.82 Total: -18.44 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.90 Total: 49.20 kcal Total: -76.89 4.10 -72.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106824539.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.256 kcal (2) G-P(sol) polarization free energy of solvation -76.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds