Wall clock time and date at job start Wed Apr 1 2020 05:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47205 * 2 1 4 4 O 1.21290 * 119.99882 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99974 * 180.02562 * 3 2 1 6 6 C 1.39955 * 119.99881 * 184.73990 * 5 3 2 7 7 C 1.38993 * 120.00110 * 213.37485 * 6 5 3 8 8 C 1.38214 * 120.22608 * 180.02562 * 7 6 5 9 9 C 1.38017 * 120.22029 * 359.74851 * 8 7 6 10 10 C 1.39582 * 119.99623 * 0.50759 * 9 8 7 11 11 C 1.47860 * 120.10818 * 179.76911 * 10 9 8 12 12 O 1.21551 * 119.99656 * 185.05046 * 11 10 9 13 13 N 1.34776 * 120.00168 * 5.05371 * 11 10 9 14 14 C 1.46502 * 120.00031 * 184.62284 * 13 11 10 15 15 H 1.09007 * 109.46786 * 37.45917 * 14 13 11 16 16 C 1.52997 * 109.47350 * 277.46186 * 14 13 11 17 17 C 1.52998 * 109.47148 * 157.45575 * 14 13 11 18 18 C 1.52998 * 109.47286 * 296.17818 * 17 14 13 19 19 H 1.08996 * 109.47199 * 54.09186 * 18 17 14 20 20 C 1.53005 * 109.47019 * 294.09206 * 18 17 14 21 21 N 1.46504 * 109.46948 * 174.09844 * 18 17 14 22 22 C 1.36940 * 119.99651 * 201.87880 * 21 18 17 23 23 H 1.07998 * 119.99619 * 4.81641 * 22 21 18 24 24 C 1.38805 * 119.99559 * 184.53836 * 22 21 18 25 25 N 1.31625 * 119.99853 * 174.49042 * 24 22 21 26 26 Si 1.86800 * 120.00221 * 354.49645 * 24 22 21 27 27 H 1.48504 * 109.46946 * 94.16900 * 26 24 22 28 28 H 1.48503 * 109.46731 * 214.16593 * 26 24 22 29 29 H 1.48489 * 109.47176 * 334.16772 * 26 24 22 30 30 C 1.38599 * 120.00403 * 33.39372 * 6 5 3 31 31 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47437 * 300.00131 * 1 2 3 33 33 H 1.08997 * 109.47234 * 60.00111 * 1 2 3 34 34 H 1.09003 * 109.47437 * 239.99869 * 2 1 3 35 35 H 1.08997 * 109.47234 * 119.99889 * 2 1 3 36 36 H 0.97001 * 120.00248 * 4.72706 * 5 3 2 37 37 H 1.08001 * 119.88377 * 359.97438 * 7 6 5 38 38 H 1.07998 * 119.88732 * 179.97438 * 8 7 6 39 39 H 1.08004 * 119.99968 * 180.25356 * 9 8 7 40 40 H 0.96997 * 120.00303 * 4.62682 * 13 11 10 41 41 H 1.09002 * 109.47375 * 179.97438 * 16 14 13 42 42 H 1.09007 * 109.46957 * 299.99627 * 16 14 13 43 43 H 1.09001 * 109.47200 * 59.99562 * 16 14 13 44 44 H 1.09003 * 109.46959 * 176.17310 * 17 14 13 45 45 H 1.08998 * 109.46653 * 56.17909 * 17 14 13 46 46 H 1.08993 * 109.47322 * 300.00509 * 20 18 17 47 47 H 1.09001 * 109.46587 * 60.00124 * 20 18 17 48 48 H 1.09000 * 109.46785 * 179.97438 * 20 18 17 49 49 H 0.97001 * 120.00054 * 21.87099 * 21 18 17 50 50 H 0.96994 * 120.00381 * 179.97438 * 25 24 22 51 51 H 1.08005 * 120.10853 * 0.02562 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8247 2.9825 0.0996 7 6 4.9939 3.3562 -0.5525 8 6 5.4599 4.6539 -0.4563 9 6 4.7646 5.5886 0.2837 10 6 3.5923 5.2220 0.9468 11 6 2.8482 6.2202 1.7445 12 8 1.8799 5.8787 2.3950 13 7 3.2436 7.5086 1.7502 14 6 2.5699 8.4777 2.6182 15 1 2.3168 8.0021 3.5658 16 6 1.2915 8.9701 1.9371 17 6 3.5003 9.6647 2.8758 18 6 4.7358 9.1875 3.6418 19 1 5.2018 8.3630 3.1022 20 6 4.3201 8.7142 5.0361 21 7 5.6904 10.2919 3.7655 22 6 7.0149 10.0297 3.9942 23 1 7.3691 9.0095 4.0059 24 6 7.9029 11.0754 4.2051 25 7 9.1525 10.8218 4.5320 26 14 7.3248 12.8425 4.0254 27 1 6.9162 13.3671 5.3532 28 1 8.4309 13.6725 3.4842 29 1 6.1678 12.8927 3.0960 30 6 3.1219 3.9125 0.8494 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.9872 0.9326 -0.0701 37 1 5.5405 2.6299 -1.1357 38 1 6.3692 4.9382 -0.9650 39 1 5.1298 6.6027 0.3531 40 1 3.9741 7.7944 1.1796 41 1 0.7900 9.6908 2.5831 42 1 1.5447 9.4457 0.9895 43 1 0.6287 8.1244 1.7536 44 1 2.9753 10.4165 3.4651 45 1 3.8077 10.0984 1.9243 46 1 3.8540 9.5385 5.5757 47 1 3.6098 7.8925 4.9441 48 1 5.2003 8.3738 5.5816 49 1 5.3843 11.2088 3.6852 50 1 9.7732 11.5524 4.6790 51 1 2.2136 3.6239 1.3575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134514420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:32 Heat of formation + Delta-G solvation = -42.915877 kcal Electronic energy + Delta-G solvation = -30278.497718 eV Core-core repulsion = 26177.789966 eV Total energy + Delta-G solvation = -4100.707752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96745 -39.94792 -38.42023 -36.97489 -35.13271 -34.72715 -33.29540 -32.32395 -31.56373 -30.67502 -29.62798 -29.01604 -26.36118 -25.22967 -24.47757 -23.47917 -22.61525 -21.36667 -20.58726 -20.47009 -19.75910 -18.52040 -17.61473 -17.52414 -16.58689 -16.33391 -16.05629 -15.95425 -15.06011 -14.92694 -14.61935 -14.54403 -14.24137 -14.04665 -13.90471 -13.69197 -13.54960 -13.20815 -12.91417 -12.75137 -12.60281 -12.42091 -12.19570 -12.12745 -12.09134 -11.94793 -11.77686 -11.67018 -11.59992 -11.29138 -10.98484 -10.74599 -10.65835 -10.51833 -10.19377 -10.15717 -9.96878 -9.82721 -9.58886 -9.18216 -8.92109 -8.90095 -8.44150 -7.26661 -5.77470 -3.12244 0.67405 1.10521 2.20434 2.61507 2.88770 3.22900 3.37001 3.39630 3.45091 3.77045 4.20407 4.54222 4.58857 4.60062 4.62692 4.68066 4.81829 4.92256 4.97741 5.03828 5.20239 5.24872 5.25841 5.32846 5.37234 5.49629 5.50692 5.59160 5.67606 5.69351 5.76554 5.83497 5.88303 5.95968 6.00414 6.04115 6.13553 6.17994 6.21601 6.24423 6.29745 6.45152 6.54349 6.64096 6.72304 6.86123 6.96644 7.06714 7.60136 7.74096 8.00551 8.29683 8.41915 9.21095 9.93887 10.14400 11.40850 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016128 B = 0.002238 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.680973 B =12506.109299 C =13540.589901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.141 4.141 3 C 0.506 3.494 4 O -0.512 6.512 5 N -0.676 5.676 6 C 0.132 3.868 7 C -0.123 4.123 8 C -0.105 4.105 9 C -0.097 4.097 10 C -0.113 4.113 11 C 0.560 3.440 12 O -0.536 6.536 13 N -0.714 5.714 14 C 0.146 3.854 15 H 0.092 0.908 16 C -0.163 4.163 17 C -0.137 4.137 18 C 0.178 3.822 19 H 0.052 0.948 20 C -0.166 4.166 21 N -0.750 5.750 22 C -0.240 4.240 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.933 5.933 26 Si 0.884 3.116 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.277 1.277 30 C -0.064 4.064 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.411 0.589 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.132 0.868 40 H 0.401 0.599 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.057 0.943 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -20.806 -13.166 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.181 4.181 3 C 0.294 3.706 4 O -0.385 6.385 5 N -0.322 5.322 6 C 0.039 3.961 7 C -0.144 4.144 8 C -0.123 4.123 9 C -0.117 4.117 10 C -0.116 4.116 11 C 0.347 3.653 12 O -0.414 6.414 13 N -0.366 5.366 14 C 0.041 3.959 15 H 0.110 0.890 16 C -0.221 4.221 17 C -0.176 4.176 18 C 0.069 3.931 19 H 0.070 0.930 20 C -0.226 4.226 21 N -0.393 5.393 22 C -0.370 4.370 23 H 0.107 0.893 24 C -0.193 4.193 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 C -0.085 4.085 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.247 0.753 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.237 0.763 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.634 -20.528 -12.614 28.190 hybrid contribution 0.652 1.115 -0.387 1.349 sum -13.983 -19.413 -13.002 27.229 Atomic orbital electron populations 1.21557 0.92594 1.01880 1.03714 1.21642 0.99063 0.92783 1.04646 1.21083 0.81553 0.92519 0.75434 1.90789 1.54897 1.46289 1.46571 1.43578 1.08011 1.06923 1.73678 1.17596 0.95511 0.85061 0.97968 1.21060 0.96578 0.97230 0.99509 1.20923 1.00030 0.92330 0.99047 1.21409 0.93925 1.00276 0.96061 1.19862 0.96678 0.94369 1.00715 1.18173 0.83702 0.82254 0.81202 1.90762 1.26936 1.80133 1.43576 1.46025 1.37778 1.08138 1.44660 1.21044 0.91852 0.88990 0.94004 0.89046 1.22178 0.97582 1.01460 1.00882 1.22231 0.96946 0.96819 1.01576 1.20166 0.88225 0.91250 0.93443 0.92986 1.22438 1.00671 0.99707 0.99814 1.42807 1.05317 1.02959 1.88253 1.19040 0.82499 0.94926 1.40525 0.89336 1.24674 0.95688 0.97353 1.01555 1.69720 1.03828 1.30947 1.53627 0.86528 0.77570 0.86588 0.77869 1.21245 1.21841 1.20308 1.21203 1.00156 0.91440 0.95681 0.91805 0.91679 0.91837 0.88647 0.88445 0.75262 0.85331 0.84710 0.85011 0.76279 0.91679 0.92596 0.92061 0.90496 0.91183 0.93568 0.94103 0.92429 0.80739 0.93141 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.16 0.34 -0.52 16 2 C -0.14 -0.70 6.42 -27.88 -0.18 -0.88 16 3 C 0.51 4.61 7.57 -10.98 -0.08 4.52 16 4 O -0.51 -7.09 13.65 5.55 0.08 -7.01 16 5 N -0.68 -5.12 5.34 -9.89 -0.05 -5.17 16 6 C 0.13 1.39 6.28 -83.74 -0.53 0.86 16 7 C -0.12 -1.06 9.95 -39.31 -0.39 -1.45 16 8 C -0.10 -0.97 10.02 -39.67 -0.40 -1.36 16 9 C -0.10 -1.08 9.52 -39.16 -0.37 -1.45 16 10 C -0.11 -1.52 5.87 -104.99 -0.62 -2.14 16 11 C 0.56 8.59 7.69 -12.32 -0.09 8.49 16 12 O -0.54 -9.94 15.81 5.32 0.08 -9.86 16 13 N -0.71 -9.62 4.37 -54.74 -0.24 -9.86 16 14 C 0.15 2.00 2.38 -67.93 -0.16 1.84 16 15 H 0.09 1.40 6.01 -51.92 -0.31 1.08 16 16 C -0.16 -2.00 9.43 37.16 0.35 -1.65 16 17 C -0.14 -2.01 4.38 -26.73 -0.12 -2.13 16 18 C 0.18 3.31 2.91 -67.93 -0.20 3.11 16 19 H 0.05 0.99 7.46 -51.93 -0.39 0.61 16 20 C -0.17 -3.04 9.23 37.16 0.34 -2.70 16 21 N -0.75 -17.21 4.96 -53.42 -0.26 -17.48 16 22 C -0.24 -6.63 10.38 -15.06 -0.16 -6.78 16 23 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 24 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 25 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 26 Si 0.88 21.88 27.77 -169.99 -4.72 17.16 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.39 6.48 56.52 0.37 -6.02 16 30 C -0.06 -0.87 8.20 -38.98 -0.32 -1.19 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.41 1.49 8.82 -40.82 -0.36 1.13 16 37 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.29 6.46 -52.48 -0.34 0.95 16 40 H 0.40 4.75 6.60 -40.82 -0.27 4.48 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.04 0.67 6.52 -51.93 -0.34 0.33 16 48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.36 8.13 5.63 -40.82 -0.23 7.90 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 51 H 0.15 2.33 6.00 -52.48 -0.32 2.01 16 LS Contribution 414.80 15.07 6.25 6.25 Total: -1.00 -36.70 414.80 -8.81 -45.51 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.04 Total: 12.15 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.67 Total: -3.43 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 0.22 Total: -60.77 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.16 Total: -16.87 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.70 -8.81 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134514420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.590 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds